Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_25940 and AO353_25945 overlap by 4 nucleotides AO353_25945 and AO353_25950 are separated by 318 nucleotides AO353_25950 and AO353_25955 are separated by 14 nucleotides AO353_25955 and AO353_25960 are separated by 33 nucleotides
AO353_25940: AO353_25940 - hypothetical protein, at 5,719,804 to 5,720,202
_25940
AO353_25945: AO353_25945 - hypothetical protein, at 5,720,199 to 5,720,471
_25945
AO353_25950: AO353_25950 - ecotin, at 5,720,790 to 5,721,269
_25950
AO353_25955: AO353_25955 - NIPSNAP family containing protein, at 5,721,284 to 5,721,589
_25955
AO353_25960: AO353_25960 - threonine dehydratase, at 5,721,623 to 5,722,630
_25960
Position (kb) 5720
5721
5722 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5719.878 kb on + strand, within AO353_25940 at 5719.878 kb on + strand, within AO353_25940 at 5719.878 kb on + strand, within AO353_25940 at 5719.878 kb on + strand, within AO353_25940 at 5719.878 kb on + strand, within AO353_25940 at 5719.878 kb on + strand, within AO353_25940 at 5719.879 kb on - strand, within AO353_25940 at 5719.879 kb on - strand, within AO353_25940 at 5719.880 kb on + strand, within AO353_25940 at 5719.881 kb on - strand, within AO353_25940 at 5719.984 kb on + strand, within AO353_25940 at 5719.984 kb on + strand, within AO353_25940 at 5720.201 kb on - strand at 5720.303 kb on + strand, within AO353_25945 at 5720.365 kb on + strand, within AO353_25945 at 5720.365 kb on + strand, within AO353_25945 at 5720.365 kb on + strand, within AO353_25945 at 5720.441 kb on + strand, within AO353_25945 at 5720.442 kb on - strand, within AO353_25945 at 5720.472 kb on + strand at 5720.472 kb on + strand at 5720.472 kb on + strand at 5720.472 kb on + strand at 5720.472 kb on + strand at 5720.472 kb on + strand at 5720.473 kb on - strand at 5720.473 kb on - strand at 5720.473 kb on - strand at 5720.490 kb on + strand at 5720.542 kb on - strand at 5720.542 kb on - strand at 5720.589 kb on + strand at 5720.589 kb on + strand at 5720.590 kb on - strand at 5720.590 kb on - strand at 5720.590 kb on - strand at 5720.590 kb on - strand at 5720.590 kb on - strand at 5720.594 kb on + strand at 5720.594 kb on + strand at 5720.594 kb on + strand at 5720.594 kb on + strand at 5720.594 kb on + strand at 5720.595 kb on - strand at 5720.595 kb on - strand at 5720.595 kb on - strand at 5720.595 kb on - strand at 5720.626 kb on + strand at 5720.635 kb on + strand at 5720.635 kb on + strand at 5720.636 kb on - strand at 5720.686 kb on - strand at 5720.744 kb on + strand at 5720.744 kb on + strand at 5720.744 kb on + strand at 5720.745 kb on - strand at 5720.745 kb on - strand at 5720.745 kb on - strand at 5720.904 kb on - strand, within AO353_25950 at 5720.949 kb on + strand at 5720.949 kb on + strand, within AO353_25950 at 5720.949 kb on + strand, within AO353_25950 at 5720.950 kb on - strand, within AO353_25950 at 5720.950 kb on - strand, within AO353_25950 at 5720.950 kb on - strand, within AO353_25950 at 5720.950 kb on - strand, within AO353_25950 at 5721.165 kb on + strand, within AO353_25950 at 5721.165 kb on + strand, within AO353_25950 at 5721.166 kb on - strand, within AO353_25950 at 5721.192 kb on + strand, within AO353_25950 at 5721.192 kb on + strand, within AO353_25950 at 5721.192 kb on + strand, within AO353_25950 at 5721.192 kb on + strand, within AO353_25950 at 5721.192 kb on + strand, within AO353_25950 at 5721.192 kb on + strand, within AO353_25950 at 5721.192 kb on + strand, within AO353_25950 at 5721.193 kb on - strand, within AO353_25950 at 5721.193 kb on - strand, within AO353_25950 at 5721.267 kb on + strand at 5721.268 kb on - strand at 5721.283 kb on + strand at 5721.283 kb on + strand at 5721.283 kb on + strand at 5721.283 kb on + strand at 5721.283 kb on + strand at 5721.283 kb on + strand at 5721.283 kb on + strand at 5721.283 kb on + strand at 5721.284 kb on - strand at 5721.284 kb on - strand at 5721.284 kb on - strand at 5721.284 kb on - strand at 5721.284 kb on - strand at 5721.284 kb on - strand at 5721.284 kb on - strand at 5721.289 kb on + strand at 5721.289 kb on + strand at 5721.290 kb on - strand at 5721.290 kb on - strand at 5721.305 kb on + strand at 5721.305 kb on + strand at 5721.305 kb on + strand at 5721.344 kb on + strand, within AO353_25955 at 5721.344 kb on + strand, within AO353_25955 at 5721.398 kb on + strand, within AO353_25955 at 5721.435 kb on - strand, within AO353_25955 at 5721.485 kb on - strand, within AO353_25955 at 5721.485 kb on - strand, within AO353_25955 at 5721.485 kb on - strand, within AO353_25955 at 5721.517 kb on - strand, within AO353_25955 at 5721.555 kb on - strand, within AO353_25955 at 5721.606 kb on + strand at 5721.606 kb on + strand at 5721.606 kb on + strand at 5721.606 kb on + strand at 5721.606 kb on + strand at 5721.607 kb on - strand at 5721.607 kb on - strand at 5721.607 kb on - strand at 5721.655 kb on + strand at 5721.656 kb on - strand at 5721.656 kb on - strand at 5721.668 kb on - strand at 5721.726 kb on + strand, within AO353_25960 at 5721.726 kb on + strand, within AO353_25960 at 5721.726 kb on + strand, within AO353_25960 at 5721.726 kb on + strand, within AO353_25960 at 5721.727 kb on - strand, within AO353_25960 at 5721.727 kb on - strand, within AO353_25960 at 5721.727 kb on - strand, within AO353_25960 at 5721.727 kb on - strand, within AO353_25960 at 5721.727 kb on - strand, within AO353_25960 at 5721.789 kb on + strand, within AO353_25960 at 5721.790 kb on - strand, within AO353_25960 at 5721.793 kb on + strand, within AO353_25960 at 5721.793 kb on + strand, within AO353_25960 at 5721.793 kb on + strand, within AO353_25960 at 5721.794 kb on - strand, within AO353_25960 at 5721.794 kb on - strand, within AO353_25960 at 5721.794 kb on - strand, within AO353_25960 at 5721.873 kb on + strand, within AO353_25960 at 5721.874 kb on - strand, within AO353_25960 at 5721.874 kb on - strand, within AO353_25960 at 5721.874 kb on - strand, within AO353_25960 at 5721.896 kb on + strand, within AO353_25960 at 5722.017 kb on + strand, within AO353_25960 at 5722.017 kb on + strand, within AO353_25960 at 5722.017 kb on + strand, within AO353_25960 at 5722.018 kb on - strand, within AO353_25960 at 5722.026 kb on + strand, within AO353_25960 at 5722.026 kb on + strand, within AO353_25960 at 5722.203 kb on + strand, within AO353_25960 at 5722.203 kb on + strand, within AO353_25960 at 5722.204 kb on - strand, within AO353_25960 at 5722.204 kb on - strand, within AO353_25960 at 5722.204 kb on - strand, within AO353_25960
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 5,719,878 + AO353_25940 0.19 +0.2 5,719,878 + AO353_25940 0.19 -2.0 5,719,878 + AO353_25940 0.19 -1.4 5,719,878 + AO353_25940 0.19 +2.6 5,719,878 + AO353_25940 0.19 +2.8 5,719,878 + AO353_25940 0.19 -0.9 5,719,879 - AO353_25940 0.19 -2.4 5,719,879 - AO353_25940 0.19 -0.4 5,719,880 + AO353_25940 0.19 -0.8 5,719,881 - AO353_25940 0.19 -2.0 5,719,984 + AO353_25940 0.45 +2.3 5,719,984 + AO353_25940 0.45 -0.4 5,720,201 - -1.0 5,720,303 + AO353_25945 0.38 +0.5 5,720,365 + AO353_25945 0.61 +0.1 5,720,365 + AO353_25945 0.61 -2.4 5,720,365 + AO353_25945 0.61 -0.2 5,720,441 + AO353_25945 0.89 -1.4 5,720,442 - AO353_25945 0.89 -0.6 5,720,472 + -3.7 5,720,472 + -0.4 5,720,472 + -1.4 5,720,472 + -0.4 5,720,472 + -2.0 5,720,472 + +2.4 5,720,473 - +3.3 5,720,473 - +2.4 5,720,473 - -2.4 5,720,490 + -2.0 5,720,542 - -0.4 5,720,542 - -2.4 5,720,589 + -2.0 5,720,589 + +1.1 5,720,590 - -1.4 5,720,590 - +0.6 5,720,590 - -2.4 5,720,590 - -2.4 5,720,590 - +2.6 5,720,594 + -0.4 5,720,594 + -0.4 5,720,594 + -0.4 5,720,594 + -2.0 5,720,594 + +1.5 5,720,595 - +0.6 5,720,595 - +0.4 5,720,595 - -3.2 5,720,595 - -2.4 5,720,626 + -2.0 5,720,635 + -2.4 5,720,635 + +0.6 5,720,636 - +2.9 5,720,686 - +0.4 5,720,744 + +3.4 5,720,744 + +0.6 5,720,744 + +1.6 5,720,745 - -3.2 5,720,745 - +0.4 5,720,745 - -2.0 5,720,904 - AO353_25950 0.24 +1.0 5,720,949 + -2.0 5,720,949 + AO353_25950 0.33 +1.8 5,720,949 + AO353_25950 0.33 +1.2 5,720,950 - AO353_25950 0.33 +0.5 5,720,950 - AO353_25950 0.33 -0.4 5,720,950 - AO353_25950 0.33 -0.4 5,720,950 - AO353_25950 0.33 +1.5 5,721,165 + AO353_25950 0.78 +2.8 5,721,165 + AO353_25950 0.78 -2.0 5,721,166 - AO353_25950 0.78 +0.5 5,721,192 + AO353_25950 0.84 -0.1 5,721,192 + AO353_25950 0.84 -1.1 5,721,192 + AO353_25950 0.84 -1.4 5,721,192 + AO353_25950 0.84 +2.2 5,721,192 + AO353_25950 0.84 +2.7 5,721,192 + AO353_25950 0.84 -2.0 5,721,192 + AO353_25950 0.84 +0.1 5,721,193 - AO353_25950 0.84 -2.0 5,721,193 - AO353_25950 0.84 -0.4 5,721,267 + +2.9 5,721,268 - -1.4 5,721,283 + -2.4 5,721,283 + -0.4 5,721,283 + -0.8 5,721,283 + +2.2 5,721,283 + -2.7 5,721,283 + +2.2 5,721,283 + -2.4 5,721,283 + +0.0 5,721,284 - -0.6 5,721,284 - +0.4 5,721,284 - -1.4 5,721,284 - -0.4 5,721,284 - +1.9 5,721,284 - +0.9 5,721,284 - +2.3 5,721,289 + -1.4 5,721,289 + +1.4 5,721,290 - -0.4 5,721,290 - -1.4 5,721,305 + -2.0 5,721,305 + -1.4 5,721,305 + +1.7 5,721,344 + AO353_25955 0.20 +0.0 5,721,344 + AO353_25955 0.20 +1.2 5,721,398 + AO353_25955 0.37 -2.0 5,721,435 - AO353_25955 0.49 +0.2 5,721,485 - AO353_25955 0.66 +0.4 5,721,485 - AO353_25955 0.66 -1.8 5,721,485 - AO353_25955 0.66 -2.0 5,721,517 - AO353_25955 0.76 +2.2 5,721,555 - AO353_25955 0.89 -1.4 5,721,606 + -1.4 5,721,606 + -0.2 5,721,606 + +1.8 5,721,606 + -1.2 5,721,606 + +0.6 5,721,607 - -0.4 5,721,607 - -1.1 5,721,607 - -2.0 5,721,655 + -2.4 5,721,656 - +2.6 5,721,656 - -1.4 5,721,668 - +1.2 5,721,726 + AO353_25960 0.10 -1.4 5,721,726 + AO353_25960 0.10 -1.1 5,721,726 + AO353_25960 0.10 -1.4 5,721,726 + AO353_25960 0.10 -1.4 5,721,727 - AO353_25960 0.10 +1.1 5,721,727 - AO353_25960 0.10 -0.4 5,721,727 - AO353_25960 0.10 +0.9 5,721,727 - AO353_25960 0.10 -0.2 5,721,727 - AO353_25960 0.10 -1.4 5,721,789 + AO353_25960 0.16 +0.6 5,721,790 - AO353_25960 0.17 -0.4 5,721,793 + AO353_25960 0.17 +0.6 5,721,793 + AO353_25960 0.17 +0.6 5,721,793 + AO353_25960 0.17 -3.2 5,721,794 - AO353_25960 0.17 -0.7 5,721,794 - AO353_25960 0.17 +0.0 5,721,794 - AO353_25960 0.17 +1.6 5,721,873 + AO353_25960 0.25 -0.4 5,721,874 - AO353_25960 0.25 +0.3 5,721,874 - AO353_25960 0.25 -0.4 5,721,874 - AO353_25960 0.25 +3.9 5,721,896 + AO353_25960 0.27 -1.1 5,722,017 + AO353_25960 0.39 +0.2 5,722,017 + AO353_25960 0.39 -0.2 5,722,017 + AO353_25960 0.39 -1.7 5,722,018 - AO353_25960 0.39 -0.4 5,722,026 + AO353_25960 0.40 +0.1 5,722,026 + AO353_25960 0.40 +1.2 5,722,203 + AO353_25960 0.58 +1.1 5,722,203 + AO353_25960 0.58 +1.6 5,722,204 - AO353_25960 0.58 -2.7 5,722,204 - AO353_25960 0.58 -0.4 5,722,204 - AO353_25960 0.58 +0.4
Or see this region's nucleotide sequence