Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25295

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25285 and AO353_25290 overlap by 4 nucleotidesAO353_25290 and AO353_25295 are separated by 3 nucleotidesAO353_25295 and AO353_25300 are separated by 789 nucleotides AO353_25285: AO353_25285 - transglutaminase, at 5,578,258 to 5,579,055 _25285 AO353_25290: AO353_25290 - hypothetical protein, at 5,579,052 to 5,580,002 _25290 AO353_25295: AO353_25295 - hypothetical protein, at 5,580,006 to 5,581,415 _25295 AO353_25300: AO353_25300 - LysR family transcriptional regulator, at 5,582,205 to 5,583,119 _25300 Position (kb) 5580 5581 5582Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5579.019 kb on - strandat 5579.024 kb on + strandat 5579.024 kb on + strandat 5579.024 kb on + strandat 5579.024 kb on + strandat 5579.025 kb on - strandat 5579.025 kb on - strandat 5579.056 kb on - strandat 5579.068 kb on + strandat 5579.398 kb on + strand, within AO353_25290at 5579.401 kb on + strand, within AO353_25290at 5579.446 kb on + strand, within AO353_25290at 5579.525 kb on - strand, within AO353_25290at 5579.615 kb on - strand, within AO353_25290at 5579.743 kb on + strand, within AO353_25290at 5579.743 kb on + strand, within AO353_25290at 5579.743 kb on + strand, within AO353_25290at 5579.743 kb on + strand, within AO353_25290at 5579.743 kb on + strand, within AO353_25290at 5579.743 kb on + strand, within AO353_25290at 5579.743 kb on + strand, within AO353_25290at 5579.743 kb on + strand, within AO353_25290at 5579.744 kb on - strand, within AO353_25290at 5579.744 kb on - strand, within AO353_25290at 5579.744 kb on - strand, within AO353_25290at 5579.744 kb on - strand, within AO353_25290at 5579.744 kb on - strand, within AO353_25290at 5579.744 kb on - strand, within AO353_25290at 5579.747 kb on + strand, within AO353_25290at 5579.747 kb on + strand, within AO353_25290at 5579.748 kb on - strand, within AO353_25290at 5579.748 kb on - strand, within AO353_25290at 5579.824 kb on + strand, within AO353_25290at 5579.825 kb on - strand, within AO353_25290at 5579.825 kb on - strand, within AO353_25290at 5579.915 kb on - strandat 5579.975 kb on - strandat 5580.007 kb on + strandat 5580.008 kb on - strandat 5580.223 kb on + strand, within AO353_25295at 5580.223 kb on + strand, within AO353_25295at 5580.223 kb on + strandat 5580.223 kb on + strand, within AO353_25295at 5580.223 kb on + strand, within AO353_25295at 5580.223 kb on + strand, within AO353_25295at 5580.224 kb on - strand, within AO353_25295at 5580.224 kb on - strand, within AO353_25295at 5580.224 kb on - strand, within AO353_25295at 5580.224 kb on - strand, within AO353_25295at 5580.224 kb on - strand, within AO353_25295at 5580.224 kb on - strand, within AO353_25295at 5580.224 kb on - strand, within AO353_25295at 5580.224 kb on - strand, within AO353_25295at 5580.399 kb on + strand, within AO353_25295at 5580.430 kb on + strand, within AO353_25295at 5580.431 kb on - strand, within AO353_25295at 5580.431 kb on - strand, within AO353_25295at 5580.454 kb on + strand, within AO353_25295at 5580.461 kb on - strandat 5580.492 kb on + strand, within AO353_25295at 5580.493 kb on - strandat 5580.652 kb on + strand, within AO353_25295at 5580.652 kb on + strand, within AO353_25295at 5580.652 kb on + strand, within AO353_25295at 5580.653 kb on - strand, within AO353_25295at 5580.653 kb on - strand, within AO353_25295at 5580.653 kb on - strand, within AO353_25295at 5580.653 kb on - strand, within AO353_25295at 5580.653 kb on - strand, within AO353_25295at 5580.653 kb on - strandat 5580.653 kb on - strand, within AO353_25295at 5580.736 kb on + strand, within AO353_25295at 5580.736 kb on + strand, within AO353_25295at 5580.765 kb on + strand, within AO353_25295at 5580.765 kb on + strand, within AO353_25295at 5580.911 kb on - strand, within AO353_25295at 5580.911 kb on - strand, within AO353_25295at 5580.911 kb on - strand, within AO353_25295at 5580.911 kb on - strand, within AO353_25295at 5580.911 kb on - strand, within AO353_25295at 5580.911 kb on - strand, within AO353_25295at 5580.949 kb on - strand, within AO353_25295at 5580.952 kb on + strand, within AO353_25295at 5580.953 kb on - strand, within AO353_25295at 5580.953 kb on - strand, within AO353_25295at 5580.953 kb on - strand, within AO353_25295at 5580.953 kb on - strand, within AO353_25295at 5580.953 kb on - strand, within AO353_25295at 5580.955 kb on + strand, within AO353_25295at 5580.955 kb on + strand, within AO353_25295at 5580.955 kb on + strand, within AO353_25295at 5580.955 kb on + strand, within AO353_25295at 5580.956 kb on - strandat 5580.956 kb on - strand, within AO353_25295at 5581.003 kb on + strandat 5581.003 kb on + strand, within AO353_25295at 5581.003 kb on + strand, within AO353_25295at 5581.003 kb on + strand, within AO353_25295at 5581.003 kb on + strand, within AO353_25295at 5581.003 kb on + strand, within AO353_25295at 5581.003 kb on + strand, within AO353_25295at 5581.003 kb on + strand, within AO353_25295at 5581.003 kb on + strand, within AO353_25295at 5581.003 kb on + strand, within AO353_25295at 5581.003 kb on + strand, within AO353_25295at 5581.003 kb on + strand, within AO353_25295at 5581.003 kb on + strand, within AO353_25295at 5581.003 kb on + strand, within AO353_25295at 5581.004 kb on - strand, within AO353_25295at 5581.004 kb on - strand, within AO353_25295at 5581.004 kb on - strand, within AO353_25295at 5581.004 kb on - strand, within AO353_25295at 5581.004 kb on - strand, within AO353_25295at 5581.004 kb on - strand, within AO353_25295at 5581.008 kb on - strand, within AO353_25295at 5581.079 kb on + strand, within AO353_25295at 5581.079 kb on + strand, within AO353_25295at 5581.080 kb on - strand, within AO353_25295at 5581.080 kb on - strand, within AO353_25295at 5581.111 kb on + strand, within AO353_25295at 5581.111 kb on + strand, within AO353_25295at 5581.111 kb on + strand, within AO353_25295at 5581.111 kb on + strand, within AO353_25295at 5581.111 kb on + strand, within AO353_25295at 5581.112 kb on - strand, within AO353_25295at 5581.112 kb on - strand, within AO353_25295at 5581.249 kb on + strand, within AO353_25295at 5581.251 kb on + strand, within AO353_25295at 5581.251 kb on + strand, within AO353_25295at 5581.251 kb on + strand, within AO353_25295at 5581.251 kb on + strand, within AO353_25295at 5581.251 kb on + strand, within AO353_25295at 5581.358 kb on - strandat 5581.387 kb on + strandat 5581.416 kb on - strandat 5581.484 kb on - strandat 5581.550 kb on + strandat 5581.641 kb on + strandat 5581.642 kb on - strandat 5581.741 kb on + strandat 5581.769 kb on + strandat 5581.830 kb on - strandat 5581.839 kb on - strandat 5581.947 kb on + strandat 5581.948 kb on - strandat 5581.995 kb on + strandat 5582.017 kb on + strandat 5582.057 kb on + strandat 5582.057 kb on + strandat 5582.175 kb on + strandat 5582.176 kb on - strandat 5582.176 kb on - strandat 5582.406 kb on + strand, within AO353_25300at 5582.406 kb on + strand, within AO353_25300at 5582.407 kb on - strand, within AO353_25300at 5582.407 kb on - strand, within AO353_25300at 5582.407 kb on - strand, within AO353_25300at 5582.407 kb on - strand, within AO353_25300at 5582.410 kb on + strand, within AO353_25300at 5582.410 kb on + strand, within AO353_25300at 5582.411 kb on - strand, within AO353_25300at 5582.411 kb on - strand, within AO353_25300at 5582.411 kb on - strand, within AO353_25300

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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5,579,019 - -0.4
5,579,024 + -0.4
5,579,024 + -1.4
5,579,024 + -3.0
5,579,024 + -2.0
5,579,025 - -0.4
5,579,025 - +1.2
5,579,056 - +2.0
5,579,068 + -2.2
5,579,398 + AO353_25290 0.36 +1.6
5,579,401 + AO353_25290 0.37 -1.4
5,579,446 + AO353_25290 0.41 +1.6
5,579,525 - AO353_25290 0.50 +2.2
5,579,615 - AO353_25290 0.59 -0.4
5,579,743 + AO353_25290 0.73 +1.7
5,579,743 + AO353_25290 0.73 -1.4
5,579,743 + AO353_25290 0.73 -1.8
5,579,743 + AO353_25290 0.73 -2.4
5,579,743 + AO353_25290 0.73 +0.6
5,579,743 + AO353_25290 0.73 -2.0
5,579,743 + AO353_25290 0.73 -1.4
5,579,743 + AO353_25290 0.73 -0.6
5,579,744 - AO353_25290 0.73 -0.8
5,579,744 - AO353_25290 0.73 -2.8
5,579,744 - AO353_25290 0.73 -0.4
5,579,744 - AO353_25290 0.73 +0.0
5,579,744 - AO353_25290 0.73 -0.0
5,579,744 - AO353_25290 0.73 -2.8
5,579,747 + AO353_25290 0.73 -3.2
5,579,747 + AO353_25290 0.73 -2.4
5,579,748 - AO353_25290 0.73 -1.0
5,579,748 - AO353_25290 0.73 +1.9
5,579,824 + AO353_25290 0.81 -0.4
5,579,825 - AO353_25290 0.81 +1.7
5,579,825 - AO353_25290 0.81 -1.0
5,579,915 - -2.4
5,579,975 - +0.6
5,580,007 + -2.0
5,580,008 - -1.0
5,580,223 + AO353_25295 0.15 -0.6
5,580,223 + AO353_25295 0.15 -1.0
5,580,223 + -1.4
5,580,223 + AO353_25295 0.15 -0.4
5,580,223 + AO353_25295 0.15 -0.4
5,580,223 + AO353_25295 0.15 +1.0
5,580,224 - AO353_25295 0.15 -1.4
5,580,224 - AO353_25295 0.15 -3.2
5,580,224 - AO353_25295 0.15 +1.7
5,580,224 - AO353_25295 0.15 +0.2
5,580,224 - AO353_25295 0.15 -3.2
5,580,224 - AO353_25295 0.15 -0.4
5,580,224 - AO353_25295 0.15 -1.4
5,580,224 - AO353_25295 0.15 +0.4
5,580,399 + AO353_25295 0.28 -0.4
5,580,430 + AO353_25295 0.30 -0.9
5,580,431 - AO353_25295 0.30 +0.8
5,580,431 - AO353_25295 0.30 -2.0
5,580,454 + AO353_25295 0.32 -0.4
5,580,461 - -0.4
5,580,492 + AO353_25295 0.34 -0.0
5,580,493 - -2.0
5,580,652 + AO353_25295 0.46 +1.2
5,580,652 + AO353_25295 0.46 -1.4
5,580,652 + AO353_25295 0.46 +2.9
5,580,653 - AO353_25295 0.46 -1.4
5,580,653 - AO353_25295 0.46 -0.4
5,580,653 - AO353_25295 0.46 +0.4
5,580,653 - AO353_25295 0.46 -1.4
5,580,653 - AO353_25295 0.46 +1.2
5,580,653 - -0.4
5,580,653 - AO353_25295 0.46 -0.4
5,580,736 + AO353_25295 0.52 -2.0
5,580,736 + AO353_25295 0.52 -2.0
5,580,765 + AO353_25295 0.54 -0.4
5,580,765 + AO353_25295 0.54 -0.4
5,580,911 - AO353_25295 0.64 +0.9
5,580,911 - AO353_25295 0.64 -3.2
5,580,911 - AO353_25295 0.64 -1.4
5,580,911 - AO353_25295 0.64 +1.6
5,580,911 - AO353_25295 0.64 +1.7
5,580,911 - AO353_25295 0.64 -0.4
5,580,949 - AO353_25295 0.67 -2.4
5,580,952 + AO353_25295 0.67 -0.4
5,580,953 - AO353_25295 0.67 -2.0
5,580,953 - AO353_25295 0.67 +0.9
5,580,953 - AO353_25295 0.67 -3.0
5,580,953 - AO353_25295 0.67 -2.0
5,580,953 - AO353_25295 0.67 +0.6
5,580,955 + AO353_25295 0.67 -1.4
5,580,955 + AO353_25295 0.67 -1.4
5,580,955 + AO353_25295 0.67 +1.2
5,580,955 + AO353_25295 0.67 +1.9
5,580,956 - -0.4
5,580,956 - AO353_25295 0.67 -1.4
5,581,003 + -0.4
5,581,003 + AO353_25295 0.71 -1.4
5,581,003 + AO353_25295 0.71 +0.2
5,581,003 + AO353_25295 0.71 -2.0
5,581,003 + AO353_25295 0.71 -3.0
5,581,003 + AO353_25295 0.71 -2.4
5,581,003 + AO353_25295 0.71 +1.2
5,581,003 + AO353_25295 0.71 +0.7
5,581,003 + AO353_25295 0.71 -0.4
5,581,003 + AO353_25295 0.71 -1.4
5,581,003 + AO353_25295 0.71 -1.4
5,581,003 + AO353_25295 0.71 -2.8
5,581,003 + AO353_25295 0.71 -1.4
5,581,003 + AO353_25295 0.71 -1.0
5,581,004 - AO353_25295 0.71 -2.4
5,581,004 - AO353_25295 0.71 -1.4
5,581,004 - AO353_25295 0.71 -0.4
5,581,004 - AO353_25295 0.71 -0.0
5,581,004 - AO353_25295 0.71 -0.4
5,581,004 - AO353_25295 0.71 +0.6
5,581,008 - AO353_25295 0.71 +0.6
5,581,079 + AO353_25295 0.76 -1.1
5,581,079 + AO353_25295 0.76 +0.9
5,581,080 - AO353_25295 0.76 +1.4
5,581,080 - AO353_25295 0.76 -2.0
5,581,111 + AO353_25295 0.78 -0.4
5,581,111 + AO353_25295 0.78 +0.6
5,581,111 + AO353_25295 0.78 -0.4
5,581,111 + AO353_25295 0.78 -1.4
5,581,111 + AO353_25295 0.78 -3.6
5,581,112 - AO353_25295 0.78 +0.6
5,581,112 - AO353_25295 0.78 -1.8
5,581,249 + AO353_25295 0.88 -0.4
5,581,251 + AO353_25295 0.88 -1.4
5,581,251 + AO353_25295 0.88 +0.5
5,581,251 + AO353_25295 0.88 -0.8
5,581,251 + AO353_25295 0.88 +0.1
5,581,251 + AO353_25295 0.88 -1.4
5,581,358 - -2.0
5,581,387 + -0.4
5,581,416 - -2.4
5,581,484 - -0.4
5,581,550 + -1.0
5,581,641 + +0.6
5,581,642 - -0.4
5,581,741 + -2.0
5,581,769 + +0.6
5,581,830 - -1.4
5,581,839 - +0.8
5,581,947 + +1.2
5,581,948 - -1.4
5,581,995 + -3.4
5,582,017 + -2.8
5,582,057 + -2.4
5,582,057 + +0.6
5,582,175 + +0.9
5,582,176 - +1.1
5,582,176 - -1.4
5,582,406 + AO353_25300 0.22 +0.2
5,582,406 + AO353_25300 0.22 -0.0
5,582,407 - AO353_25300 0.22 -0.4
5,582,407 - AO353_25300 0.22 -1.4
5,582,407 - AO353_25300 0.22 +0.2
5,582,407 - AO353_25300 0.22 -2.0
5,582,410 + AO353_25300 0.22 -0.4
5,582,410 + AO353_25300 0.22 +0.7
5,582,411 - AO353_25300 0.23 -2.0
5,582,411 - AO353_25300 0.23 -1.4
5,582,411 - AO353_25300 0.23 -0.8

Or see this region's nucleotide sequence