Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24405

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24395 and AO353_24400 are separated by 301 nucleotidesAO353_24400 and AO353_24405 are separated by 52 nucleotidesAO353_24405 and AO353_24410 are separated by 277 nucleotides AO353_24395: AO353_24395 - alkylhydroperoxidase, at 5,364,612 to 5,364,944 _24395 AO353_24400: AO353_24400 - ACP phosphodiesterase, at 5,365,246 to 5,365,851 _24400 AO353_24405: AO353_24405 - ArsR family transcriptional regulator, at 5,365,904 to 5,366,407 _24405 AO353_24410: AO353_24410 - amino acid ABC transporter substrate-binding protein, at 5,366,685 to 5,367,506 _24410 Position (kb) 5365 5366 5367Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5365.144 kb on + strandat 5365.227 kb on + strandat 5365.227 kb on + strandat 5365.227 kb on + strandat 5365.227 kb on + strandat 5365.227 kb on + strandat 5365.228 kb on - strandat 5365.228 kb on - strandat 5365.228 kb on - strandat 5365.234 kb on + strandat 5365.234 kb on + strandat 5365.234 kb on + strandat 5365.235 kb on - strandat 5365.252 kb on + strandat 5365.252 kb on + strandat 5365.253 kb on - strandat 5365.253 kb on - strandat 5365.323 kb on - strand, within AO353_24400at 5365.399 kb on - strand, within AO353_24400at 5365.399 kb on - strand, within AO353_24400at 5365.499 kb on + strand, within AO353_24400at 5365.559 kb on - strand, within AO353_24400at 5365.645 kb on + strand, within AO353_24400at 5365.697 kb on + strand, within AO353_24400at 5365.726 kb on + strand, within AO353_24400at 5365.726 kb on + strand, within AO353_24400at 5365.747 kb on + strand, within AO353_24400at 5365.748 kb on - strand, within AO353_24400at 5365.905 kb on + strandat 5365.929 kb on - strandat 5366.032 kb on + strand, within AO353_24405at 5366.055 kb on - strand, within AO353_24405at 5366.168 kb on + strand, within AO353_24405at 5366.278 kb on + strand, within AO353_24405at 5366.279 kb on - strand, within AO353_24405at 5366.279 kb on - strand, within AO353_24405at 5366.367 kb on - strandat 5366.367 kb on - strandat 5366.409 kb on + strandat 5366.497 kb on + strandat 5366.506 kb on + strandat 5366.519 kb on + strandat 5366.520 kb on - strandat 5366.537 kb on + strandat 5366.538 kb on - strandat 5366.538 kb on - strandat 5366.616 kb on + strandat 5366.616 kb on + strandat 5366.678 kb on + strandat 5366.699 kb on + strandat 5366.699 kb on + strandat 5366.699 kb on + strandat 5366.700 kb on - strandat 5366.700 kb on - strandat 5366.700 kb on - strandat 5366.731 kb on + strandat 5366.731 kb on + strandat 5366.731 kb on + strandat 5366.731 kb on + strandat 5366.732 kb on - strandat 5366.732 kb on - strandat 5366.732 kb on - strandat 5366.732 kb on - strandat 5366.732 kb on - strandat 5366.732 kb on - strandat 5366.734 kb on + strandat 5366.735 kb on - strandat 5366.735 kb on - strandat 5366.847 kb on + strand, within AO353_24410at 5366.847 kb on + strand, within AO353_24410at 5366.847 kb on + strand, within AO353_24410at 5366.848 kb on - strand, within AO353_24410at 5366.848 kb on - strand, within AO353_24410at 5366.848 kb on - strand, within AO353_24410at 5366.848 kb on - strandat 5366.848 kb on - strand, within AO353_24410at 5366.848 kb on - strand, within AO353_24410at 5366.877 kb on + strand, within AO353_24410at 5366.921 kb on - strand, within AO353_24410at 5366.921 kb on - strand, within AO353_24410at 5366.968 kb on + strand, within AO353_24410at 5366.969 kb on - strand, within AO353_24410at 5367.011 kb on + strand, within AO353_24410at 5367.011 kb on + strand, within AO353_24410at 5367.011 kb on + strand, within AO353_24410at 5367.011 kb on + strand, within AO353_24410at 5367.011 kb on + strand, within AO353_24410at 5367.012 kb on - strand, within AO353_24410at 5367.012 kb on - strand, within AO353_24410at 5367.012 kb on - strand, within AO353_24410at 5367.084 kb on + strand, within AO353_24410at 5367.085 kb on - strand, within AO353_24410at 5367.085 kb on - strand, within AO353_24410at 5367.116 kb on + strand, within AO353_24410at 5367.183 kb on - strand, within AO353_24410at 5367.183 kb on - strand, within AO353_24410at 5367.258 kb on - strand, within AO353_24410at 5367.288 kb on - strand, within AO353_24410at 5367.300 kb on - strand, within AO353_24410at 5367.300 kb on - strand, within AO353_24410at 5367.337 kb on + strand, within AO353_24410at 5367.337 kb on + strand, within AO353_24410at 5367.337 kb on + strand, within AO353_24410at 5367.353 kb on - strand, within AO353_24410at 5367.398 kb on + strand, within AO353_24410at 5367.405 kb on + strand, within AO353_24410at 5367.405 kb on + strand, within AO353_24410

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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5,365,144 + -0.4
5,365,227 + -0.4
5,365,227 + +1.6
5,365,227 + -0.4
5,365,227 + +1.6
5,365,227 + +0.6
5,365,228 - -1.4
5,365,228 - -0.0
5,365,228 - -1.2
5,365,234 + -2.0
5,365,234 + -2.0
5,365,234 + +0.7
5,365,235 - -1.4
5,365,252 + +2.2
5,365,252 + -1.4
5,365,253 - -2.0
5,365,253 - +0.8
5,365,323 - AO353_24400 0.13 +0.7
5,365,399 - AO353_24400 0.25 +0.7
5,365,399 - AO353_24400 0.25 -0.4
5,365,499 + AO353_24400 0.42 -2.0
5,365,559 - AO353_24400 0.52 -1.4
5,365,645 + AO353_24400 0.66 -1.4
5,365,697 + AO353_24400 0.74 +1.1
5,365,726 + AO353_24400 0.79 -0.4
5,365,726 + AO353_24400 0.79 -0.4
5,365,747 + AO353_24400 0.83 -1.9
5,365,748 - AO353_24400 0.83 +1.1
5,365,905 + -3.0
5,365,929 - +1.1
5,366,032 + AO353_24405 0.25 -2.4
5,366,055 - AO353_24405 0.30 -1.4
5,366,168 + AO353_24405 0.52 -2.8
5,366,278 + AO353_24405 0.74 -0.4
5,366,279 - AO353_24405 0.74 -2.8
5,366,279 - AO353_24405 0.74 -2.4
5,366,367 - -0.4
5,366,367 - -1.4
5,366,409 + -2.0
5,366,497 + -0.4
5,366,506 + -2.8
5,366,519 + -2.0
5,366,520 - -2.4
5,366,537 + +0.6
5,366,538 - -0.9
5,366,538 - -1.4
5,366,616 + -3.0
5,366,616 + +1.9
5,366,678 + +0.8
5,366,699 + +1.1
5,366,699 + -1.4
5,366,699 + -2.0
5,366,700 - +1.8
5,366,700 - -1.4
5,366,700 - -0.8
5,366,731 + -3.8
5,366,731 + +1.4
5,366,731 + -2.8
5,366,731 + +0.2
5,366,732 - -2.0
5,366,732 - -2.0
5,366,732 - +1.1
5,366,732 - +3.3
5,366,732 - -2.4
5,366,732 - -2.6
5,366,734 + +0.1
5,366,735 - -0.4
5,366,735 - -1.4
5,366,847 + AO353_24410 0.20 -2.0
5,366,847 + AO353_24410 0.20 -0.4
5,366,847 + AO353_24410 0.20 +1.9
5,366,848 - AO353_24410 0.20 -0.1
5,366,848 - AO353_24410 0.20 -3.3
5,366,848 - AO353_24410 0.20 -0.1
5,366,848 - -0.4
5,366,848 - AO353_24410 0.20 -3.4
5,366,848 - AO353_24410 0.20 -2.0
5,366,877 + AO353_24410 0.23 -1.3
5,366,921 - AO353_24410 0.29 -3.0
5,366,921 - AO353_24410 0.29 +0.2
5,366,968 + AO353_24410 0.34 +0.6
5,366,969 - AO353_24410 0.35 -0.8
5,367,011 + AO353_24410 0.40 -1.4
5,367,011 + AO353_24410 0.40 -1.0
5,367,011 + AO353_24410 0.40 -0.2
5,367,011 + AO353_24410 0.40 -1.4
5,367,011 + AO353_24410 0.40 +0.1
5,367,012 - AO353_24410 0.40 -1.4
5,367,012 - AO353_24410 0.40 +0.4
5,367,012 - AO353_24410 0.40 +1.6
5,367,084 + AO353_24410 0.49 +2.1
5,367,085 - AO353_24410 0.49 -3.3
5,367,085 - AO353_24410 0.49 -2.0
5,367,116 + AO353_24410 0.52 +1.1
5,367,183 - AO353_24410 0.61 -0.4
5,367,183 - AO353_24410 0.61 -0.6
5,367,258 - AO353_24410 0.70 -2.0
5,367,288 - AO353_24410 0.73 -2.8
5,367,300 - AO353_24410 0.75 -0.4
5,367,300 - AO353_24410 0.75 -0.8
5,367,337 + AO353_24410 0.79 -0.4
5,367,337 + AO353_24410 0.79 -0.0
5,367,337 + AO353_24410 0.79 -1.4
5,367,353 - AO353_24410 0.81 +1.1
5,367,398 + AO353_24410 0.87 -0.4
5,367,405 + AO353_24410 0.88 -0.4
5,367,405 + AO353_24410 0.88 -0.1

Or see this region's nucleotide sequence