Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24255

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24250 and AO353_24255 are separated by 309 nucleotidesAO353_24255 and AO353_24260 are separated by 34 nucleotides AO353_24250: AO353_24250 - hypothetical protein, at 5,336,206 to 5,336,553 _24250 AO353_24255: AO353_24255 - hypothetical protein, at 5,336,863 to 5,337,609 _24255 AO353_24260: AO353_24260 - hypothetical protein, at 5,337,644 to 5,338,573 _24260 Position (kb) 5336 5337 5338Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5335.864 kb on + strandat 5335.911 kb on + strandat 5335.912 kb on - strandat 5335.912 kb on - strandat 5335.913 kb on + strandat 5335.914 kb on - strandat 5335.914 kb on - strandat 5335.996 kb on + strandat 5336.033 kb on + strandat 5336.034 kb on - strandat 5336.034 kb on - strandat 5336.052 kb on + strandat 5336.052 kb on + strandat 5336.052 kb on + strandat 5336.052 kb on + strandat 5336.052 kb on + strandat 5336.052 kb on + strandat 5336.052 kb on + strandat 5336.052 kb on + strandat 5336.053 kb on - strandat 5336.053 kb on - strandat 5336.072 kb on + strandat 5336.073 kb on - strandat 5336.096 kb on + strandat 5336.097 kb on - strandat 5336.187 kb on + strandat 5336.187 kb on + strandat 5336.188 kb on - strandat 5336.188 kb on - strandat 5336.403 kb on + strand, within AO353_24250at 5336.403 kb on + strand, within AO353_24250at 5336.404 kb on - strand, within AO353_24250at 5336.404 kb on - strand, within AO353_24250at 5336.404 kb on - strand, within AO353_24250at 5336.407 kb on + strand, within AO353_24250at 5336.407 kb on + strand, within AO353_24250at 5336.407 kb on + strandat 5336.407 kb on + strand, within AO353_24250at 5336.407 kb on + strand, within AO353_24250at 5336.407 kb on + strand, within AO353_24250at 5336.408 kb on - strand, within AO353_24250at 5336.408 kb on - strand, within AO353_24250at 5336.408 kb on - strand, within AO353_24250at 5336.408 kb on - strand, within AO353_24250at 5336.408 kb on - strand, within AO353_24250at 5336.408 kb on - strand, within AO353_24250at 5336.408 kb on - strand, within AO353_24250at 5336.408 kb on - strand, within AO353_24250at 5336.408 kb on - strand, within AO353_24250at 5336.408 kb on - strand, within AO353_24250at 5336.439 kb on + strand, within AO353_24250at 5336.439 kb on + strand, within AO353_24250at 5336.439 kb on + strand, within AO353_24250at 5336.439 kb on + strand, within AO353_24250at 5336.439 kb on + strand, within AO353_24250at 5336.439 kb on + strand, within AO353_24250at 5336.439 kb on + strand, within AO353_24250at 5336.439 kb on + strand, within AO353_24250at 5336.440 kb on - strand, within AO353_24250at 5336.543 kb on + strandat 5336.543 kb on + strandat 5336.544 kb on - strandat 5336.610 kb on + strandat 5336.610 kb on + strandat 5336.611 kb on - strandat 5336.611 kb on - strandat 5336.611 kb on - strandat 5336.611 kb on - strandat 5336.697 kb on - strandat 5336.697 kb on - strandat 5336.705 kb on - strandat 5336.752 kb on + strandat 5336.778 kb on + strandat 5336.902 kb on + strandat 5337.192 kb on + strand, within AO353_24255at 5337.192 kb on + strand, within AO353_24255at 5337.195 kb on - strand, within AO353_24255at 5337.252 kb on + strand, within AO353_24255at 5337.292 kb on + strand, within AO353_24255at 5337.293 kb on - strand, within AO353_24255at 5337.293 kb on - strand, within AO353_24255at 5337.316 kb on + strand, within AO353_24255at 5337.317 kb on - strand, within AO353_24255at 5337.365 kb on - strand, within AO353_24255at 5337.389 kb on + strand, within AO353_24255at 5337.408 kb on + strand, within AO353_24255at 5337.520 kb on + strand, within AO353_24255at 5337.559 kb on + strandat 5337.560 kb on - strandat 5337.560 kb on - strandat 5337.625 kb on + strandat 5337.658 kb on - strandat 5337.728 kb on + strandat 5337.728 kb on + strandat 5337.728 kb on + strandat 5337.728 kb on + strandat 5337.728 kb on + strandat 5337.729 kb on - strandat 5337.863 kb on - strand, within AO353_24260at 5337.958 kb on + strand, within AO353_24260at 5338.031 kb on + strand, within AO353_24260at 5338.604 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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5,335,864 + -2.0
5,335,911 + -1.4
5,335,912 - -0.4
5,335,912 - -0.4
5,335,913 + -0.4
5,335,914 - +3.5
5,335,914 - -2.4
5,335,996 + +1.5
5,336,033 + +1.9
5,336,034 - -1.4
5,336,034 - +0.6
5,336,052 + +1.1
5,336,052 + +2.1
5,336,052 + -2.4
5,336,052 + +1.9
5,336,052 + +3.5
5,336,052 + -1.4
5,336,052 + +0.1
5,336,052 + -2.4
5,336,053 - +0.6
5,336,053 - -2.4
5,336,072 + -1.4
5,336,073 - +2.4
5,336,096 + +2.1
5,336,097 - -1.2
5,336,187 + +0.1
5,336,187 + -2.4
5,336,188 - -3.0
5,336,188 - +2.4
5,336,403 + AO353_24250 0.57 -0.4
5,336,403 + AO353_24250 0.57 -2.4
5,336,404 - AO353_24250 0.57 -3.0
5,336,404 - AO353_24250 0.57 -0.4
5,336,404 - AO353_24250 0.57 -0.4
5,336,407 + AO353_24250 0.58 -0.4
5,336,407 + AO353_24250 0.58 +2.6
5,336,407 + +1.6
5,336,407 + AO353_24250 0.58 +1.3
5,336,407 + AO353_24250 0.58 -0.4
5,336,407 + AO353_24250 0.58 +1.0
5,336,408 - AO353_24250 0.58 +1.1
5,336,408 - AO353_24250 0.58 +0.0
5,336,408 - AO353_24250 0.58 -0.8
5,336,408 - AO353_24250 0.58 -1.4
5,336,408 - AO353_24250 0.58 -1.8
5,336,408 - AO353_24250 0.58 +0.8
5,336,408 - AO353_24250 0.58 -0.6
5,336,408 - AO353_24250 0.58 +2.9
5,336,408 - AO353_24250 0.58 -2.0
5,336,408 - AO353_24250 0.58 -1.4
5,336,439 + AO353_24250 0.67 -1.4
5,336,439 + AO353_24250 0.67 +0.1
5,336,439 + AO353_24250 0.67 -3.4
5,336,439 + AO353_24250 0.67 -2.4
5,336,439 + AO353_24250 0.67 -0.2
5,336,439 + AO353_24250 0.67 +2.1
5,336,439 + AO353_24250 0.67 +0.3
5,336,439 + AO353_24250 0.67 -0.4
5,336,440 - AO353_24250 0.67 +0.1
5,336,543 + +1.1
5,336,543 + -2.8
5,336,544 - -0.4
5,336,610 + -1.4
5,336,610 + -2.0
5,336,611 - -2.0
5,336,611 - +0.6
5,336,611 - -2.4
5,336,611 - -2.0
5,336,697 - -0.4
5,336,697 - -3.4
5,336,705 - -1.0
5,336,752 + -0.4
5,336,778 + -1.8
5,336,902 + -2.4
5,337,192 + AO353_24255 0.44 -0.4
5,337,192 + AO353_24255 0.44 -2.0
5,337,195 - AO353_24255 0.44 -0.9
5,337,252 + AO353_24255 0.52 -1.4
5,337,292 + AO353_24255 0.57 -2.0
5,337,293 - AO353_24255 0.58 -2.0
5,337,293 - AO353_24255 0.58 +0.9
5,337,316 + AO353_24255 0.61 -0.4
5,337,317 - AO353_24255 0.61 -2.0
5,337,365 - AO353_24255 0.67 -2.0
5,337,389 + AO353_24255 0.70 -1.4
5,337,408 + AO353_24255 0.73 -1.4
5,337,520 + AO353_24255 0.88 -0.4
5,337,559 + -2.8
5,337,560 - -3.0
5,337,560 - -2.0
5,337,625 + -0.2
5,337,658 - -1.4
5,337,728 + +2.6
5,337,728 + -1.2
5,337,728 + -1.4
5,337,728 + -2.8
5,337,728 + +0.9
5,337,729 - -0.0
5,337,863 - AO353_24260 0.24 -2.0
5,337,958 + AO353_24260 0.34 +2.6
5,338,031 + AO353_24260 0.42 +0.7
5,338,604 + +3.6

Or see this region's nucleotide sequence