Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24015

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24010 and AO353_24015 are separated by 58 nucleotidesAO353_24015 and AO353_24020 are separated by 228 nucleotidesAO353_24020 and AO353_24025 are separated by 160 nucleotides AO353_24010: AO353_24010 - Rhizobactin siderophore biosynthesis protein RhbE, at 5,278,818 to 5,280,137 _24010 AO353_24015: AO353_24015 - non ribosomal peptide synthetase BasB, at 5,280,196 to 5,282,364 _24015 AO353_24020: AO353_24020 - RNA polymerase subunit sigma, at 5,282,593 to 5,283,111 _24020 AO353_24025: AO353_24025 - ABC transporter ATP-binding protein, at 5,283,272 to 5,285,062 _24025 Position (kb) 5280 5281 5282 5283Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5279.259 kb on + strand, within AO353_24010at 5279.259 kb on + strand, within AO353_24010at 5279.260 kb on - strand, within AO353_24010at 5279.260 kb on - strand, within AO353_24010at 5279.529 kb on + strand, within AO353_24010at 5279.530 kb on - strandat 5279.530 kb on - strand, within AO353_24010at 5279.555 kb on + strand, within AO353_24010at 5279.565 kb on + strand, within AO353_24010at 5279.565 kb on + strand, within AO353_24010at 5279.565 kb on + strand, within AO353_24010at 5279.565 kb on + strand, within AO353_24010at 5279.565 kb on + strand, within AO353_24010at 5279.565 kb on + strand, within AO353_24010at 5279.565 kb on + strand, within AO353_24010at 5279.566 kb on - strand, within AO353_24010at 5279.566 kb on - strand, within AO353_24010at 5279.566 kb on - strand, within AO353_24010at 5279.566 kb on - strand, within AO353_24010at 5279.566 kb on - strand, within AO353_24010at 5279.566 kb on - strand, within AO353_24010at 5279.566 kb on - strand, within AO353_24010at 5279.566 kb on - strand, within AO353_24010at 5279.574 kb on + strand, within AO353_24010at 5279.574 kb on + strand, within AO353_24010at 5279.585 kb on + strand, within AO353_24010at 5279.585 kb on + strand, within AO353_24010at 5279.585 kb on + strandat 5279.585 kb on + strand, within AO353_24010at 5279.586 kb on - strand, within AO353_24010at 5279.634 kb on + strand, within AO353_24010at 5279.634 kb on + strand, within AO353_24010at 5279.670 kb on + strand, within AO353_24010at 5279.670 kb on + strand, within AO353_24010at 5279.670 kb on + strand, within AO353_24010at 5279.671 kb on - strand, within AO353_24010at 5279.682 kb on + strand, within AO353_24010at 5279.682 kb on + strand, within AO353_24010at 5279.683 kb on - strand, within AO353_24010at 5279.708 kb on + strand, within AO353_24010at 5279.708 kb on + strand, within AO353_24010at 5279.921 kb on + strand, within AO353_24010at 5279.921 kb on + strand, within AO353_24010at 5279.973 kb on - strand, within AO353_24010at 5280.135 kb on + strandat 5280.135 kb on + strandat 5280.135 kb on + strandat 5280.160 kb on + strandat 5280.161 kb on - strandat 5280.490 kb on - strand, within AO353_24015at 5280.490 kb on - strand, within AO353_24015at 5280.491 kb on + strand, within AO353_24015at 5280.491 kb on + strand, within AO353_24015at 5280.491 kb on + strand, within AO353_24015at 5280.491 kb on + strand, within AO353_24015at 5280.491 kb on + strand, within AO353_24015at 5280.492 kb on - strand, within AO353_24015at 5280.492 kb on - strand, within AO353_24015at 5280.492 kb on - strand, within AO353_24015at 5280.492 kb on - strand, within AO353_24015at 5280.492 kb on - strand, within AO353_24015at 5280.492 kb on - strand, within AO353_24015at 5280.566 kb on + strand, within AO353_24015at 5280.566 kb on + strand, within AO353_24015at 5280.567 kb on - strand, within AO353_24015at 5280.567 kb on - strand, within AO353_24015at 5280.567 kb on - strand, within AO353_24015at 5280.668 kb on + strand, within AO353_24015at 5280.668 kb on + strand, within AO353_24015at 5280.668 kb on + strand, within AO353_24015at 5280.774 kb on + strand, within AO353_24015at 5280.775 kb on - strand, within AO353_24015at 5280.776 kb on + strand, within AO353_24015at 5280.776 kb on + strand, within AO353_24015at 5280.776 kb on + strand, within AO353_24015at 5280.777 kb on - strand, within AO353_24015at 5280.777 kb on - strand, within AO353_24015at 5280.821 kb on + strand, within AO353_24015at 5280.821 kb on + strand, within AO353_24015at 5280.821 kb on + strand, within AO353_24015at 5280.822 kb on - strand, within AO353_24015at 5280.822 kb on - strand, within AO353_24015at 5280.822 kb on - strand, within AO353_24015at 5280.822 kb on - strand, within AO353_24015at 5280.965 kb on + strand, within AO353_24015at 5280.966 kb on - strand, within AO353_24015at 5280.966 kb on - strand, within AO353_24015at 5280.966 kb on - strand, within AO353_24015at 5280.993 kb on + strand, within AO353_24015at 5280.994 kb on - strand, within AO353_24015at 5281.076 kb on + strand, within AO353_24015at 5281.076 kb on + strand, within AO353_24015at 5281.076 kb on + strand, within AO353_24015at 5281.178 kb on + strand, within AO353_24015at 5281.178 kb on + strand, within AO353_24015at 5281.179 kb on - strand, within AO353_24015at 5281.179 kb on - strand, within AO353_24015at 5281.287 kb on - strand, within AO353_24015at 5281.322 kb on + strand, within AO353_24015at 5281.354 kb on - strand, within AO353_24015at 5281.354 kb on - strand, within AO353_24015at 5281.478 kb on + strand, within AO353_24015at 5281.478 kb on + strand, within AO353_24015at 5281.479 kb on - strand, within AO353_24015at 5281.479 kb on - strand, within AO353_24015at 5281.479 kb on - strand, within AO353_24015at 5281.479 kb on - strand, within AO353_24015at 5281.660 kb on + strand, within AO353_24015at 5281.660 kb on + strand, within AO353_24015at 5281.660 kb on + strand, within AO353_24015at 5281.660 kb on + strand, within AO353_24015at 5281.660 kb on + strand, within AO353_24015at 5281.661 kb on - strand, within AO353_24015at 5281.661 kb on - strand, within AO353_24015at 5281.661 kb on - strand, within AO353_24015at 5281.722 kb on + strand, within AO353_24015at 5281.722 kb on + strand, within AO353_24015at 5281.723 kb on - strand, within AO353_24015at 5281.723 kb on - strand, within AO353_24015at 5281.895 kb on + strand, within AO353_24015at 5281.895 kb on + strand, within AO353_24015at 5281.896 kb on - strand, within AO353_24015at 5281.896 kb on - strand, within AO353_24015at 5282.304 kb on + strandat 5282.304 kb on + strandat 5282.304 kb on + strandat 5282.304 kb on + strandat 5282.304 kb on + strandat 5282.305 kb on - strandat 5282.305 kb on - strandat 5282.305 kb on - strandat 5282.305 kb on - strandat 5282.305 kb on - strandat 5282.305 kb on - strandat 5282.305 kb on - strandat 5282.305 kb on - strandat 5282.305 kb on - strandat 5282.329 kb on + strandat 5282.330 kb on - strandat 5282.381 kb on - strandat 5282.396 kb on - strandat 5282.403 kb on - strandat 5282.403 kb on - strandat 5282.403 kb on - strandat 5282.403 kb on - strandat 5282.447 kb on - strandat 5282.503 kb on + strandat 5282.503 kb on + strandat 5282.503 kb on + strandat 5282.503 kb on + strandat 5282.503 kb on + strandat 5282.515 kb on - strandat 5282.515 kb on - strandat 5282.638 kb on + strandat 5282.638 kb on + strandat 5282.638 kb on + strandat 5282.638 kb on + strandat 5282.638 kb on + strandat 5282.639 kb on - strandat 5282.639 kb on - strandat 5282.639 kb on - strandat 5282.725 kb on + strand, within AO353_24020at 5282.725 kb on + strand, within AO353_24020at 5282.726 kb on - strand, within AO353_24020at 5282.726 kb on - strand, within AO353_24020at 5282.726 kb on - strand, within AO353_24020at 5282.726 kb on - strand, within AO353_24020at 5282.726 kb on - strand, within AO353_24020at 5282.726 kb on - strand, within AO353_24020at 5282.726 kb on - strand, within AO353_24020at 5282.810 kb on + strand, within AO353_24020at 5282.810 kb on + strand, within AO353_24020at 5282.810 kb on + strand, within AO353_24020at 5282.810 kb on + strand, within AO353_24020at 5282.810 kb on + strand, within AO353_24020at 5282.810 kb on + strand, within AO353_24020at 5282.811 kb on - strand, within AO353_24020at 5282.811 kb on - strand, within AO353_24020at 5282.811 kb on - strand, within AO353_24020at 5282.811 kb on - strand, within AO353_24020at 5282.811 kb on - strand, within AO353_24020at 5282.811 kb on - strand, within AO353_24020at 5282.946 kb on + strand, within AO353_24020at 5282.946 kb on + strand, within AO353_24020at 5282.947 kb on - strand, within AO353_24020at 5282.947 kb on - strand, within AO353_24020at 5283.055 kb on + strand, within AO353_24020at 5283.055 kb on + strand, within AO353_24020at 5283.055 kb on + strand, within AO353_24020at 5283.055 kb on + strand, within AO353_24020at 5283.055 kb on + strand, within AO353_24020at 5283.055 kb on + strand, within AO353_24020at 5283.055 kb on + strand, within AO353_24020at 5283.056 kb on - strand, within AO353_24020at 5283.056 kb on - strand, within AO353_24020at 5283.056 kb on - strand, within AO353_24020at 5283.056 kb on - strand, within AO353_24020at 5283.056 kb on - strand, within AO353_24020at 5283.144 kb on - strandat 5283.144 kb on - strandat 5283.185 kb on + strandat 5283.186 kb on - strandat 5283.191 kb on + strandat 5283.192 kb on - strandat 5283.192 kb on - strandat 5283.256 kb on + strandat 5283.256 kb on + strandat 5283.257 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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5,279,259 + AO353_24010 0.33 -1.4
5,279,259 + AO353_24010 0.33 -1.4
5,279,260 - AO353_24010 0.33 +3.7
5,279,260 - AO353_24010 0.33 -0.9
5,279,529 + AO353_24010 0.54 -2.8
5,279,530 - -0.4
5,279,530 - AO353_24010 0.54 -1.7
5,279,555 + AO353_24010 0.56 -1.4
5,279,565 + AO353_24010 0.57 -0.6
5,279,565 + AO353_24010 0.57 -0.4
5,279,565 + AO353_24010 0.57 -3.2
5,279,565 + AO353_24010 0.57 +0.6
5,279,565 + AO353_24010 0.57 -0.1
5,279,565 + AO353_24010 0.57 -2.0
5,279,565 + AO353_24010 0.57 -2.0
5,279,566 - AO353_24010 0.57 +2.7
5,279,566 - AO353_24010 0.57 -1.3
5,279,566 - AO353_24010 0.57 -0.4
5,279,566 - AO353_24010 0.57 -1.4
5,279,566 - AO353_24010 0.57 -2.8
5,279,566 - AO353_24010 0.57 +1.4
5,279,566 - AO353_24010 0.57 -3.2
5,279,566 - AO353_24010 0.57 +0.2
5,279,574 + AO353_24010 0.57 +1.6
5,279,574 + AO353_24010 0.57 -3.9
5,279,585 + AO353_24010 0.58 -0.4
5,279,585 + AO353_24010 0.58 -2.4
5,279,585 + -2.0
5,279,585 + AO353_24010 0.58 +0.4
5,279,586 - AO353_24010 0.58 +1.9
5,279,634 + AO353_24010 0.62 -2.0
5,279,634 + AO353_24010 0.62 -0.4
5,279,670 + AO353_24010 0.65 -1.4
5,279,670 + AO353_24010 0.65 -1.4
5,279,670 + AO353_24010 0.65 -0.8
5,279,671 - AO353_24010 0.65 +1.4
5,279,682 + AO353_24010 0.65 -1.4
5,279,682 + AO353_24010 0.65 -2.0
5,279,683 - AO353_24010 0.66 +0.1
5,279,708 + AO353_24010 0.67 -1.4
5,279,708 + AO353_24010 0.67 -1.0
5,279,921 + AO353_24010 0.84 -0.4
5,279,921 + AO353_24010 0.84 -0.4
5,279,973 - AO353_24010 0.88 -0.4
5,280,135 + -3.2
5,280,135 + -2.0
5,280,135 + -1.4
5,280,160 + -2.2
5,280,161 - -1.8
5,280,490 - AO353_24015 0.14 -2.0
5,280,490 - AO353_24015 0.14 +0.4
5,280,491 + AO353_24015 0.14 +1.9
5,280,491 + AO353_24015 0.14 +0.1
5,280,491 + AO353_24015 0.14 -1.4
5,280,491 + AO353_24015 0.14 -2.0
5,280,491 + AO353_24015 0.14 -2.4
5,280,492 - AO353_24015 0.14 -0.4
5,280,492 - AO353_24015 0.14 +1.1
5,280,492 - AO353_24015 0.14 -2.0
5,280,492 - AO353_24015 0.14 -2.4
5,280,492 - AO353_24015 0.14 -2.0
5,280,492 - AO353_24015 0.14 +0.9
5,280,566 + AO353_24015 0.17 -2.8
5,280,566 + AO353_24015 0.17 +1.1
5,280,567 - AO353_24015 0.17 -0.2
5,280,567 - AO353_24015 0.17 +0.1
5,280,567 - AO353_24015 0.17 +1.4
5,280,668 + AO353_24015 0.22 -2.8
5,280,668 + AO353_24015 0.22 +0.6
5,280,668 + AO353_24015 0.22 +0.3
5,280,774 + AO353_24015 0.27 -0.4
5,280,775 - AO353_24015 0.27 -0.4
5,280,776 + AO353_24015 0.27 +1.1
5,280,776 + AO353_24015 0.27 +0.3
5,280,776 + AO353_24015 0.27 -3.8
5,280,777 - AO353_24015 0.27 -2.0
5,280,777 - AO353_24015 0.27 -2.8
5,280,821 + AO353_24015 0.29 +2.3
5,280,821 + AO353_24015 0.29 -1.4
5,280,821 + AO353_24015 0.29 -2.0
5,280,822 - AO353_24015 0.29 +0.6
5,280,822 - AO353_24015 0.29 -2.4
5,280,822 - AO353_24015 0.29 -1.4
5,280,822 - AO353_24015 0.29 -2.4
5,280,965 + AO353_24015 0.35 -0.4
5,280,966 - AO353_24015 0.36 +2.4
5,280,966 - AO353_24015 0.36 -1.4
5,280,966 - AO353_24015 0.36 +0.6
5,280,993 + AO353_24015 0.37 -1.4
5,280,994 - AO353_24015 0.37 +1.6
5,281,076 + AO353_24015 0.41 -2.4
5,281,076 + AO353_24015 0.41 -2.0
5,281,076 + AO353_24015 0.41 -2.0
5,281,178 + AO353_24015 0.45 -0.4
5,281,178 + AO353_24015 0.45 +1.1
5,281,179 - AO353_24015 0.45 +0.8
5,281,179 - AO353_24015 0.45 -1.2
5,281,287 - AO353_24015 0.50 +0.8
5,281,322 + AO353_24015 0.52 -0.6
5,281,354 - AO353_24015 0.53 -0.7
5,281,354 - AO353_24015 0.53 +1.1
5,281,478 + AO353_24015 0.59 +1.6
5,281,478 + AO353_24015 0.59 -1.2
5,281,479 - AO353_24015 0.59 -0.4
5,281,479 - AO353_24015 0.59 -2.4
5,281,479 - AO353_24015 0.59 -0.4
5,281,479 - AO353_24015 0.59 -0.4
5,281,660 + AO353_24015 0.67 -0.0
5,281,660 + AO353_24015 0.67 +1.0
5,281,660 + AO353_24015 0.67 -2.4
5,281,660 + AO353_24015 0.67 +0.1
5,281,660 + AO353_24015 0.67 -0.4
5,281,661 - AO353_24015 0.68 -0.4
5,281,661 - AO353_24015 0.68 -0.4
5,281,661 - AO353_24015 0.68 -1.4
5,281,722 + AO353_24015 0.70 +2.6
5,281,722 + AO353_24015 0.70 +1.8
5,281,723 - AO353_24015 0.70 -0.4
5,281,723 - AO353_24015 0.70 +2.7
5,281,895 + AO353_24015 0.78 +0.8
5,281,895 + AO353_24015 0.78 +1.6
5,281,896 - AO353_24015 0.78 -0.4
5,281,896 - AO353_24015 0.78 -2.0
5,282,304 + +2.2
5,282,304 + -1.0
5,282,304 + -0.4
5,282,304 + -0.4
5,282,304 + -1.4
5,282,305 - -2.0
5,282,305 - +1.4
5,282,305 - -0.4
5,282,305 - -0.4
5,282,305 - +0.7
5,282,305 - -2.0
5,282,305 - +1.4
5,282,305 - -0.9
5,282,305 - +1.1
5,282,329 + +1.6
5,282,330 - +0.4
5,282,381 - -0.4
5,282,396 - -0.4
5,282,403 - -0.9
5,282,403 - +0.0
5,282,403 - +2.1
5,282,403 - -1.4
5,282,447 - -2.4
5,282,503 + +1.6
5,282,503 + +1.9
5,282,503 + +3.2
5,282,503 + -2.4
5,282,503 + -1.4
5,282,515 - -1.4
5,282,515 - -1.0
5,282,638 + -0.4
5,282,638 + -2.0
5,282,638 + -0.4
5,282,638 + -1.4
5,282,638 + -2.4
5,282,639 - +1.9
5,282,639 - -2.0
5,282,639 - -0.9
5,282,725 + AO353_24020 0.25 -0.8
5,282,725 + AO353_24020 0.25 +0.1
5,282,726 - AO353_24020 0.26 -2.4
5,282,726 - AO353_24020 0.26 -0.0
5,282,726 - AO353_24020 0.26 -1.4
5,282,726 - AO353_24020 0.26 -2.6
5,282,726 - AO353_24020 0.26 +0.4
5,282,726 - AO353_24020 0.26 +0.0
5,282,726 - AO353_24020 0.26 -3.0
5,282,810 + AO353_24020 0.42 -1.4
5,282,810 + AO353_24020 0.42 -1.4
5,282,810 + AO353_24020 0.42 -1.4
5,282,810 + AO353_24020 0.42 -0.1
5,282,810 + AO353_24020 0.42 +0.6
5,282,810 + AO353_24020 0.42 -0.9
5,282,811 - AO353_24020 0.42 +0.9
5,282,811 - AO353_24020 0.42 -2.0
5,282,811 - AO353_24020 0.42 +2.1
5,282,811 - AO353_24020 0.42 +1.9
5,282,811 - AO353_24020 0.42 -2.0
5,282,811 - AO353_24020 0.42 +0.2
5,282,946 + AO353_24020 0.68 -1.9
5,282,946 + AO353_24020 0.68 +1.1
5,282,947 - AO353_24020 0.68 -0.9
5,282,947 - AO353_24020 0.68 -3.0
5,283,055 + AO353_24020 0.89 +0.6
5,283,055 + AO353_24020 0.89 +1.4
5,283,055 + AO353_24020 0.89 -2.4
5,283,055 + AO353_24020 0.89 +1.4
5,283,055 + AO353_24020 0.89 +1.6
5,283,055 + AO353_24020 0.89 -3.0
5,283,055 + AO353_24020 0.89 +0.3
5,283,056 - AO353_24020 0.89 -1.4
5,283,056 - AO353_24020 0.89 -1.1
5,283,056 - AO353_24020 0.89 -0.1
5,283,056 - AO353_24020 0.89 -1.4
5,283,056 - AO353_24020 0.89 -3.0
5,283,144 - -1.4
5,283,144 - -0.4
5,283,185 + +3.0
5,283,186 - -1.4
5,283,191 + -1.6
5,283,192 - -0.4
5,283,192 - -1.2
5,283,256 + -0.4
5,283,256 + -2.0
5,283,257 - -1.4

Or see this region's nucleotide sequence