Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24000

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23995 and AO353_24000 are separated by 26 nucleotidesAO353_24000 and AO353_24005 are separated by 113 nucleotides AO353_23995: AO353_23995 - 2,3-dihydroxybenzoate-AMP ligase, at 5,271,222 to 5,273,057 _23995 AO353_24000: AO353_24000 - isochorismate synthase, at 5,273,084 to 5,274,259 _24000 AO353_24005: AO353_24005 - peptide synthetase, at 5,274,373 to 5,278,725 _24005 Position (kb) 5273 5274 5275Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8at 5272.395 kb on + strand, within AO353_23995at 5272.395 kb on + strand, within AO353_23995at 5272.395 kb on + strand, within AO353_23995at 5272.395 kb on + strand, within AO353_23995at 5272.396 kb on - strand, within AO353_23995at 5272.396 kb on - strand, within AO353_23995at 5272.396 kb on - strand, within AO353_23995at 5272.396 kb on - strand, within AO353_23995at 5272.420 kb on + strand, within AO353_23995at 5272.420 kb on + strand, within AO353_23995at 5272.420 kb on + strand, within AO353_23995at 5272.420 kb on + strand, within AO353_23995at 5272.420 kb on + strand, within AO353_23995at 5272.421 kb on - strand, within AO353_23995at 5272.421 kb on - strand, within AO353_23995at 5272.421 kb on - strand, within AO353_23995at 5272.421 kb on - strand, within AO353_23995at 5272.639 kb on + strand, within AO353_23995at 5272.639 kb on + strand, within AO353_23995at 5272.640 kb on - strand, within AO353_23995at 5272.640 kb on - strand, within AO353_23995at 5272.640 kb on - strand, within AO353_23995at 5272.640 kb on - strand, within AO353_23995at 5272.640 kb on - strand, within AO353_23995at 5272.708 kb on + strand, within AO353_23995at 5272.739 kb on - strand, within AO353_23995at 5272.739 kb on - strand, within AO353_23995at 5272.739 kb on - strand, within AO353_23995at 5272.739 kb on - strand, within AO353_23995at 5272.792 kb on + strand, within AO353_23995at 5272.792 kb on + strand, within AO353_23995at 5272.792 kb on + strand, within AO353_23995at 5272.793 kb on - strand, within AO353_23995at 5272.805 kb on + strand, within AO353_23995at 5272.805 kb on + strand, within AO353_23995at 5272.806 kb on - strand, within AO353_23995at 5272.900 kb on + strandat 5272.900 kb on + strandat 5272.900 kb on + strandat 5272.901 kb on - strandat 5272.901 kb on - strandat 5272.904 kb on + strandat 5272.904 kb on + strandat 5272.904 kb on + strandat 5272.904 kb on + strandat 5272.905 kb on - strandat 5273.049 kb on + strandat 5273.049 kb on + strandat 5273.049 kb on + strandat 5273.049 kb on + strandat 5273.049 kb on + strandat 5273.049 kb on + strandat 5273.049 kb on + strandat 5273.050 kb on - strandat 5273.050 kb on - strandat 5273.050 kb on - strandat 5273.051 kb on + strandat 5273.051 kb on + strandat 5273.083 kb on - strandat 5273.083 kb on - strandat 5273.083 kb on - strandat 5273.085 kb on + strandat 5273.085 kb on + strandat 5273.086 kb on - strandat 5273.713 kb on + strand, within AO353_24000at 5273.713 kb on + strand, within AO353_24000at 5273.713 kb on + strand, within AO353_24000at 5273.713 kb on + strand, within AO353_24000at 5273.714 kb on - strand, within AO353_24000at 5273.717 kb on + strandat 5273.717 kb on + strand, within AO353_24000at 5273.758 kb on + strand, within AO353_24000at 5273.758 kb on + strand, within AO353_24000at 5273.898 kb on - strand, within AO353_24000at 5273.946 kb on - strand, within AO353_24000at 5273.946 kb on - strand, within AO353_24000at 5273.988 kb on + strand, within AO353_24000at 5273.988 kb on + strand, within AO353_24000at 5273.989 kb on - strand, within AO353_24000at 5273.989 kb on - strand, within AO353_24000at 5273.989 kb on - strand, within AO353_24000at 5273.989 kb on - strand, within AO353_24000at 5274.103 kb on + strand, within AO353_24000at 5274.164 kb on + strandat 5274.164 kb on + strandat 5274.165 kb on - strandat 5274.165 kb on - strandat 5274.211 kb on + strandat 5274.211 kb on + strandat 5274.211 kb on + strandat 5274.212 kb on - strandat 5274.243 kb on - strandat 5274.383 kb on + strandat 5274.383 kb on + strandat 5274.383 kb on + strandat 5274.383 kb on + strandat 5274.383 kb on + strandat 5274.383 kb on + strandat 5274.384 kb on - strandat 5274.384 kb on - strandat 5274.435 kb on - strandat 5274.457 kb on + strandat 5274.457 kb on + strandat 5274.457 kb on + strandat 5274.458 kb on - strandat 5274.617 kb on + strandat 5274.617 kb on + strandat 5274.617 kb on + strandat 5274.617 kb on + strandat 5274.617 kb on + strandat 5274.617 kb on + strandat 5274.618 kb on - strandat 5274.641 kb on + strandat 5274.642 kb on - strandat 5274.829 kb on + strand, within AO353_24005at 5274.829 kb on + strand, within AO353_24005at 5274.830 kb on - strand, within AO353_24005at 5274.830 kb on - strand, within AO353_24005at 5275.127 kb on + strand, within AO353_24005at 5275.128 kb on - strand, within AO353_24005

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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5,272,395 + AO353_23995 0.64 -0.4
5,272,395 + AO353_23995 0.64 +2.8
5,272,395 + AO353_23995 0.64 +2.7
5,272,395 + AO353_23995 0.64 +4.9
5,272,396 - AO353_23995 0.64 -2.0
5,272,396 - AO353_23995 0.64 +2.4
5,272,396 - AO353_23995 0.64 +4.0
5,272,396 - AO353_23995 0.64 -1.4
5,272,420 + AO353_23995 0.65 +4.5
5,272,420 + AO353_23995 0.65 +3.3
5,272,420 + AO353_23995 0.65 +4.1
5,272,420 + AO353_23995 0.65 +3.7
5,272,420 + AO353_23995 0.65 +3.4
5,272,421 - AO353_23995 0.65 -1.4
5,272,421 - AO353_23995 0.65 -0.4
5,272,421 - AO353_23995 0.65 +2.9
5,272,421 - AO353_23995 0.65 -0.0
5,272,639 + AO353_23995 0.77 +0.8
5,272,639 + AO353_23995 0.77 +2.4
5,272,640 - AO353_23995 0.77 -1.4
5,272,640 - AO353_23995 0.77 -0.4
5,272,640 - AO353_23995 0.77 -1.4
5,272,640 - AO353_23995 0.77 -1.9
5,272,640 - AO353_23995 0.77 -0.4
5,272,708 + AO353_23995 0.81 +2.8
5,272,739 - AO353_23995 0.83 +0.6
5,272,739 - AO353_23995 0.83 -1.4
5,272,739 - AO353_23995 0.83 -1.4
5,272,739 - AO353_23995 0.83 -1.4
5,272,792 + AO353_23995 0.86 +2.9
5,272,792 + AO353_23995 0.86 +5.0
5,272,792 + AO353_23995 0.86 +3.5
5,272,793 - AO353_23995 0.86 -1.2
5,272,805 + AO353_23995 0.86 +4.3
5,272,805 + AO353_23995 0.86 -1.0
5,272,806 - AO353_23995 0.86 -1.4
5,272,900 + +2.9
5,272,900 + +4.0
5,272,900 + +3.4
5,272,901 - -0.4
5,272,901 - +0.3
5,272,904 + +4.7
5,272,904 + +3.6
5,272,904 + +4.1
5,272,904 + +4.8
5,272,905 - -1.4
5,273,049 + +4.4
5,273,049 + +3.6
5,273,049 + +4.0
5,273,049 + +2.5
5,273,049 + +1.9
5,273,049 + +3.4
5,273,049 + +4.9
5,273,050 - -0.0
5,273,050 - +2.4
5,273,050 - -0.4
5,273,051 + +2.8
5,273,051 + +3.1
5,273,083 - +0.9
5,273,083 - +0.1
5,273,083 - -2.0
5,273,085 + +4.5
5,273,085 + +4.8
5,273,086 - -2.8
5,273,713 + AO353_24000 0.53 +5.5
5,273,713 + AO353_24000 0.53 +4.1
5,273,713 + AO353_24000 0.53 +4.4
5,273,713 + AO353_24000 0.53 +4.9
5,273,714 - AO353_24000 0.54 -0.4
5,273,717 + +4.9
5,273,717 + AO353_24000 0.54 +3.3
5,273,758 + AO353_24000 0.57 +4.7
5,273,758 + AO353_24000 0.57 +6.0
5,273,898 - AO353_24000 0.69 -0.8
5,273,946 - AO353_24000 0.73 +0.6
5,273,946 - AO353_24000 0.73 +1.4
5,273,988 + AO353_24000 0.77 +5.5
5,273,988 + AO353_24000 0.77 +6.3
5,273,989 - AO353_24000 0.77 -2.0
5,273,989 - AO353_24000 0.77 -1.4
5,273,989 - AO353_24000 0.77 -2.0
5,273,989 - AO353_24000 0.77 +0.1
5,274,103 + AO353_24000 0.87 +6.4
5,274,164 + +7.1
5,274,164 + +6.9
5,274,165 - -3.0
5,274,165 - -1.4
5,274,211 + +8.4
5,274,211 + +6.4
5,274,211 + +5.7
5,274,212 - +0.6
5,274,243 - +2.1
5,274,383 + -1.8
5,274,383 + +2.1
5,274,383 + -3.2
5,274,383 + +1.1
5,274,383 + +0.1
5,274,383 + +3.7
5,274,384 - -2.0
5,274,384 - +0.6
5,274,435 - -0.4
5,274,457 + -0.4
5,274,457 + -1.4
5,274,457 + -2.0
5,274,458 - -2.0
5,274,617 + +2.1
5,274,617 + -1.4
5,274,617 + +0.6
5,274,617 + -1.4
5,274,617 + -0.9
5,274,617 + +1.1
5,274,618 - +0.6
5,274,641 + -2.4
5,274,642 - -1.4
5,274,829 + AO353_24005 0.10 +1.4
5,274,829 + AO353_24005 0.10 +1.9
5,274,830 - AO353_24005 0.10 -2.4
5,274,830 - AO353_24005 0.10 -1.4
5,275,127 + AO353_24005 0.17 +0.4
5,275,128 - AO353_24005 0.17 -1.0

Or see this region's nucleotide sequence