Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22945

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_22940 and AO353_22945 overlap by 4 nucleotidesAO353_22945 and AO353_22950 are separated by 84 nucleotides AO353_22940: AO353_22940 - alpha-amylase, at 5,035,615 to 5,038,956 _22940 AO353_22945: AO353_22945 - glycogen branching protein, at 5,038,953 to 5,041,187 _22945 AO353_22950: AO353_22950 - universal stress protein UspA, at 5,041,272 to 5,042,138 _22950 Position (kb) 5038 5039 5040 5041 5042Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5037.978 kb on + strand, within AO353_22940at 5037.978 kb on + strand, within AO353_22940at 5037.978 kb on + strandat 5037.979 kb on - strand, within AO353_22940at 5037.979 kb on - strand, within AO353_22940at 5038.014 kb on + strand, within AO353_22940at 5038.055 kb on - strand, within AO353_22940at 5038.156 kb on + strand, within AO353_22940at 5038.156 kb on + strand, within AO353_22940at 5038.156 kb on + strand, within AO353_22940at 5038.156 kb on + strand, within AO353_22940at 5038.157 kb on - strand, within AO353_22940at 5038.157 kb on - strand, within AO353_22940at 5038.157 kb on - strand, within AO353_22940at 5038.157 kb on - strand, within AO353_22940at 5038.157 kb on - strand, within AO353_22940at 5038.157 kb on - strand, within AO353_22940at 5038.273 kb on - strand, within AO353_22940at 5038.522 kb on + strand, within AO353_22940at 5038.522 kb on + strand, within AO353_22940at 5038.523 kb on - strand, within AO353_22940at 5038.589 kb on - strand, within AO353_22940at 5038.761 kb on + strandat 5038.762 kb on - strandat 5038.762 kb on - strandat 5038.762 kb on - strandat 5038.762 kb on - strandat 5038.762 kb on - strandat 5038.762 kb on - strandat 5038.849 kb on + strandat 5038.850 kb on - strandat 5038.898 kb on + strandat 5038.898 kb on + strandat 5038.898 kb on + strandat 5038.898 kb on + strandat 5038.898 kb on + strandat 5038.899 kb on - strandat 5038.899 kb on - strandat 5038.899 kb on - strandat 5038.899 kb on - strandat 5038.899 kb on - strandat 5038.899 kb on - strandat 5038.901 kb on - strandat 5038.901 kb on - strandat 5038.933 kb on + strandat 5038.933 kb on + strandat 5038.933 kb on + strandat 5038.934 kb on - strandat 5038.934 kb on - strandat 5038.934 kb on - strandat 5039.109 kb on + strandat 5039.109 kb on + strandat 5039.229 kb on + strand, within AO353_22945at 5039.229 kb on + strand, within AO353_22945at 5039.229 kb on + strand, within AO353_22945at 5039.229 kb on + strand, within AO353_22945at 5039.229 kb on + strand, within AO353_22945at 5039.230 kb on - strand, within AO353_22945at 5039.230 kb on - strand, within AO353_22945at 5039.230 kb on - strand, within AO353_22945at 5039.230 kb on - strand, within AO353_22945at 5039.230 kb on - strand, within AO353_22945at 5039.280 kb on + strand, within AO353_22945at 5039.280 kb on + strand, within AO353_22945at 5039.281 kb on - strand, within AO353_22945at 5039.316 kb on + strand, within AO353_22945at 5039.316 kb on + strand, within AO353_22945at 5039.316 kb on + strand, within AO353_22945at 5039.317 kb on - strand, within AO353_22945at 5039.317 kb on - strand, within AO353_22945at 5039.317 kb on - strand, within AO353_22945at 5039.547 kb on + strand, within AO353_22945at 5039.547 kb on + strand, within AO353_22945at 5039.547 kb on + strand, within AO353_22945at 5039.548 kb on - strand, within AO353_22945at 5039.548 kb on - strand, within AO353_22945at 5039.548 kb on - strand, within AO353_22945at 5039.661 kb on - strand, within AO353_22945at 5039.733 kb on + strand, within AO353_22945at 5039.733 kb on + strand, within AO353_22945at 5039.733 kb on + strand, within AO353_22945at 5039.733 kb on + strand, within AO353_22945at 5039.733 kb on + strand, within AO353_22945at 5039.734 kb on - strand, within AO353_22945at 5039.832 kb on + strand, within AO353_22945at 5039.832 kb on + strand, within AO353_22945at 5039.832 kb on + strand, within AO353_22945at 5039.832 kb on + strand, within AO353_22945at 5039.832 kb on + strand, within AO353_22945at 5039.832 kb on + strand, within AO353_22945at 5039.832 kb on + strand, within AO353_22945at 5039.833 kb on - strand, within AO353_22945at 5039.833 kb on - strand, within AO353_22945at 5039.833 kb on - strand, within AO353_22945at 5039.858 kb on + strand, within AO353_22945at 5040.078 kb on + strand, within AO353_22945at 5040.078 kb on + strand, within AO353_22945at 5040.079 kb on - strand, within AO353_22945at 5040.132 kb on + strand, within AO353_22945at 5040.132 kb on + strand, within AO353_22945at 5040.132 kb on + strand, within AO353_22945at 5040.132 kb on + strand, within AO353_22945at 5040.133 kb on - strand, within AO353_22945at 5040.133 kb on - strand, within AO353_22945at 5040.133 kb on - strand, within AO353_22945at 5040.154 kb on + strand, within AO353_22945at 5040.154 kb on + strand, within AO353_22945at 5040.154 kb on + strand, within AO353_22945at 5040.154 kb on + strand, within AO353_22945at 5040.154 kb on + strand, within AO353_22945at 5040.154 kb on + strand, within AO353_22945at 5040.155 kb on - strand, within AO353_22945at 5040.155 kb on - strand, within AO353_22945at 5040.155 kb on - strand, within AO353_22945at 5040.155 kb on - strand, within AO353_22945at 5040.155 kb on - strand, within AO353_22945at 5040.155 kb on - strand, within AO353_22945at 5040.444 kb on + strand, within AO353_22945at 5040.444 kb on + strand, within AO353_22945at 5040.483 kb on + strand, within AO353_22945at 5040.483 kb on + strand, within AO353_22945at 5040.483 kb on + strand, within AO353_22945at 5040.483 kb on + strand, within AO353_22945at 5040.483 kb on + strand, within AO353_22945at 5040.483 kb on + strand, within AO353_22945at 5040.483 kb on + strand, within AO353_22945at 5040.483 kb on + strand, within AO353_22945at 5040.484 kb on - strand, within AO353_22945at 5040.484 kb on - strand, within AO353_22945at 5040.484 kb on - strand, within AO353_22945at 5040.484 kb on - strand, within AO353_22945at 5040.484 kb on - strand, within AO353_22945at 5040.546 kb on + strand, within AO353_22945at 5040.546 kb on + strand, within AO353_22945at 5040.546 kb on + strand, within AO353_22945at 5040.546 kb on + strand, within AO353_22945at 5040.546 kb on + strand, within AO353_22945at 5040.546 kb on + strand, within AO353_22945at 5040.547 kb on - strand, within AO353_22945at 5040.666 kb on + strand, within AO353_22945at 5040.666 kb on + strand, within AO353_22945at 5040.667 kb on - strand, within AO353_22945at 5040.667 kb on - strand, within AO353_22945at 5040.768 kb on + strand, within AO353_22945at 5040.769 kb on - strand, within AO353_22945at 5040.769 kb on - strand, within AO353_22945at 5040.918 kb on + strand, within AO353_22945at 5040.919 kb on - strand, within AO353_22945at 5041.059 kb on + strandat 5041.060 kb on - strandat 5041.060 kb on - strandat 5041.074 kb on + strandat 5041.273 kb on + strandat 5041.273 kb on + strandat 5041.273 kb on + strandat 5041.274 kb on - strandat 5041.274 kb on - strandat 5041.445 kb on + strand, within AO353_22950at 5041.446 kb on - strand, within AO353_22950at 5041.446 kb on - strand, within AO353_22950at 5041.446 kb on - strand, within AO353_22950at 5041.456 kb on + strand, within AO353_22950at 5041.457 kb on - strand, within AO353_22950at 5041.457 kb on - strand, within AO353_22950at 5041.563 kb on - strand, within AO353_22950at 5042.016 kb on - strand, within AO353_22950at 5042.181 kb on + strandat 5042.181 kb on + strandat 5042.181 kb on + strandat 5042.181 kb on + strandat 5042.181 kb on + strandat 5042.181 kb on + strandat 5042.182 kb on - strandat 5042.182 kb on - strandat 5042.183 kb on + strandat 5042.183 kb on + strandat 5042.184 kb on - strandat 5042.184 kb on - strandat 5042.184 kb on - strandat 5042.184 kb on - strandat 5042.184 kb on - strandat 5042.184 kb on - strandat 5042.184 kb on - strandat 5042.184 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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5,037,978 + AO353_22940 0.71 +0.4
5,037,978 + AO353_22940 0.71 +0.0
5,037,978 + -0.4
5,037,979 - AO353_22940 0.71 +1.2
5,037,979 - AO353_22940 0.71 +1.9
5,038,014 + AO353_22940 0.72 -1.4
5,038,055 - AO353_22940 0.73 +1.2
5,038,156 + AO353_22940 0.76 -1.4
5,038,156 + AO353_22940 0.76 -3.0
5,038,156 + AO353_22940 0.76 -1.4
5,038,156 + AO353_22940 0.76 -0.4
5,038,157 - AO353_22940 0.76 -0.4
5,038,157 - AO353_22940 0.76 -2.0
5,038,157 - AO353_22940 0.76 -2.4
5,038,157 - AO353_22940 0.76 -0.4
5,038,157 - AO353_22940 0.76 +1.2
5,038,157 - AO353_22940 0.76 -0.4
5,038,273 - AO353_22940 0.80 -0.4
5,038,522 + AO353_22940 0.87 -2.0
5,038,522 + AO353_22940 0.87 -2.0
5,038,523 - AO353_22940 0.87 -0.4
5,038,589 - AO353_22940 0.89 -0.4
5,038,761 + +0.6
5,038,762 - +1.6
5,038,762 - +0.2
5,038,762 - -0.4
5,038,762 - -0.4
5,038,762 - -0.1
5,038,762 - +0.5
5,038,849 + -1.0
5,038,850 - -1.6
5,038,898 + -2.0
5,038,898 + -0.4
5,038,898 + -2.0
5,038,898 + +0.9
5,038,898 + +1.6
5,038,899 - -0.4
5,038,899 - -0.4
5,038,899 - +0.6
5,038,899 - +0.3
5,038,899 - +1.8
5,038,899 - +1.2
5,038,901 - -0.4
5,038,901 - -0.8
5,038,933 + +2.0
5,038,933 + -1.8
5,038,933 + -2.0
5,038,934 - -2.4
5,038,934 - +1.9
5,038,934 - -0.4
5,039,109 + -2.0
5,039,109 + +0.7
5,039,229 + AO353_22945 0.12 +0.1
5,039,229 + AO353_22945 0.12 +3.4
5,039,229 + AO353_22945 0.12 -0.4
5,039,229 + AO353_22945 0.12 -1.4
5,039,229 + AO353_22945 0.12 -0.4
5,039,230 - AO353_22945 0.12 -1.4
5,039,230 - AO353_22945 0.12 -0.4
5,039,230 - AO353_22945 0.12 +0.6
5,039,230 - AO353_22945 0.12 +1.8
5,039,230 - AO353_22945 0.12 +0.4
5,039,280 + AO353_22945 0.15 +0.4
5,039,280 + AO353_22945 0.15 -0.5
5,039,281 - AO353_22945 0.15 -1.4
5,039,316 + AO353_22945 0.16 +1.1
5,039,316 + AO353_22945 0.16 -2.0
5,039,316 + AO353_22945 0.16 -3.0
5,039,317 - AO353_22945 0.16 -1.0
5,039,317 - AO353_22945 0.16 -0.4
5,039,317 - AO353_22945 0.16 -2.0
5,039,547 + AO353_22945 0.27 -1.0
5,039,547 + AO353_22945 0.27 -2.4
5,039,547 + AO353_22945 0.27 +0.1
5,039,548 - AO353_22945 0.27 -1.0
5,039,548 - AO353_22945 0.27 -2.0
5,039,548 - AO353_22945 0.27 -2.4
5,039,661 - AO353_22945 0.32 +0.8
5,039,733 + AO353_22945 0.35 +1.2
5,039,733 + AO353_22945 0.35 -1.4
5,039,733 + AO353_22945 0.35 -0.4
5,039,733 + AO353_22945 0.35 +1.9
5,039,733 + AO353_22945 0.35 -1.4
5,039,734 - AO353_22945 0.35 -2.7
5,039,832 + AO353_22945 0.39 -2.0
5,039,832 + AO353_22945 0.39 -0.4
5,039,832 + AO353_22945 0.39 -2.0
5,039,832 + AO353_22945 0.39 +0.5
5,039,832 + AO353_22945 0.39 +0.0
5,039,832 + AO353_22945 0.39 -2.0
5,039,832 + AO353_22945 0.39 -0.4
5,039,833 - AO353_22945 0.39 -1.4
5,039,833 - AO353_22945 0.39 +0.4
5,039,833 - AO353_22945 0.39 +0.6
5,039,858 + AO353_22945 0.40 -2.0
5,040,078 + AO353_22945 0.50 +0.2
5,040,078 + AO353_22945 0.50 -1.4
5,040,079 - AO353_22945 0.50 -0.4
5,040,132 + AO353_22945 0.53 -2.0
5,040,132 + AO353_22945 0.53 +0.2
5,040,132 + AO353_22945 0.53 +0.3
5,040,132 + AO353_22945 0.53 -0.4
5,040,133 - AO353_22945 0.53 +1.0
5,040,133 - AO353_22945 0.53 +1.6
5,040,133 - AO353_22945 0.53 -1.4
5,040,154 + AO353_22945 0.54 -2.0
5,040,154 + AO353_22945 0.54 -0.4
5,040,154 + AO353_22945 0.54 +1.9
5,040,154 + AO353_22945 0.54 -3.4
5,040,154 + AO353_22945 0.54 +0.6
5,040,154 + AO353_22945 0.54 -0.7
5,040,155 - AO353_22945 0.54 -0.4
5,040,155 - AO353_22945 0.54 +1.0
5,040,155 - AO353_22945 0.54 -2.4
5,040,155 - AO353_22945 0.54 -1.0
5,040,155 - AO353_22945 0.54 -1.4
5,040,155 - AO353_22945 0.54 +1.5
5,040,444 + AO353_22945 0.67 +0.6
5,040,444 + AO353_22945 0.67 -2.0
5,040,483 + AO353_22945 0.68 +2.4
5,040,483 + AO353_22945 0.68 -2.4
5,040,483 + AO353_22945 0.68 -1.4
5,040,483 + AO353_22945 0.68 +3.4
5,040,483 + AO353_22945 0.68 -1.0
5,040,483 + AO353_22945 0.68 +2.3
5,040,483 + AO353_22945 0.68 -1.0
5,040,483 + AO353_22945 0.68 +2.1
5,040,484 - AO353_22945 0.69 -2.0
5,040,484 - AO353_22945 0.69 -1.4
5,040,484 - AO353_22945 0.69 -0.4
5,040,484 - AO353_22945 0.69 -2.0
5,040,484 - AO353_22945 0.69 -1.4
5,040,546 + AO353_22945 0.71 +2.9
5,040,546 + AO353_22945 0.71 -1.4
5,040,546 + AO353_22945 0.71 -1.0
5,040,546 + AO353_22945 0.71 -0.4
5,040,546 + AO353_22945 0.71 -1.4
5,040,546 + AO353_22945 0.71 -1.7
5,040,547 - AO353_22945 0.71 +0.1
5,040,666 + AO353_22945 0.77 -0.4
5,040,666 + AO353_22945 0.77 +0.2
5,040,667 - AO353_22945 0.77 +0.4
5,040,667 - AO353_22945 0.77 -1.0
5,040,768 + AO353_22945 0.81 -1.4
5,040,769 - AO353_22945 0.81 +1.3
5,040,769 - AO353_22945 0.81 +1.0
5,040,918 + AO353_22945 0.88 +0.9
5,040,919 - AO353_22945 0.88 +1.4
5,041,059 + -0.4
5,041,060 - -0.4
5,041,060 - -0.4
5,041,074 + +1.4
5,041,273 + -3.2
5,041,273 + +1.2
5,041,273 + +0.6
5,041,274 - -0.4
5,041,274 - +2.4
5,041,445 + AO353_22950 0.20 -1.0
5,041,446 - AO353_22950 0.20 -1.2
5,041,446 - AO353_22950 0.20 -3.0
5,041,446 - AO353_22950 0.20 -0.4
5,041,456 + AO353_22950 0.21 +1.4
5,041,457 - AO353_22950 0.21 -0.4
5,041,457 - AO353_22950 0.21 +0.6
5,041,563 - AO353_22950 0.34 -0.4
5,042,016 - AO353_22950 0.86 -1.6
5,042,181 + -1.4
5,042,181 + -0.4
5,042,181 + +0.9
5,042,181 + +0.2
5,042,181 + +0.0
5,042,181 + +0.0
5,042,182 - +0.5
5,042,182 - -1.2
5,042,183 + -3.0
5,042,183 + -3.0
5,042,184 - -0.4
5,042,184 - +0.6
5,042,184 - -2.0
5,042,184 - -1.4
5,042,184 - -1.4
5,042,184 - -3.2
5,042,184 - -3.4
5,042,184 - -0.4

Or see this region's nucleotide sequence