Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22055

Experiment: Cisplatin 0.006 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_22050 and AO353_22055 are separated by 10 nucleotidesAO353_22055 and AO353_22060 overlap by 7 nucleotides AO353_22050: AO353_22050 - protease, at 4,828,746 to 4,829,741 _22050 AO353_22055: AO353_22055 - protease, at 4,829,752 to 4,830,642 _22055 AO353_22060: AO353_22060 - lipid carrier protein, at 4,830,636 to 4,831,103 _22060 Position (kb) 4829 4830 4831Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4828.784 kb on - strandat 4828.818 kb on + strandat 4828.819 kb on - strandat 4828.819 kb on - strandat 4828.929 kb on + strand, within AO353_22050at 4828.930 kb on - strand, within AO353_22050at 4829.050 kb on - strand, within AO353_22050at 4829.130 kb on + strand, within AO353_22050at 4829.131 kb on - strand, within AO353_22050at 4829.131 kb on - strand, within AO353_22050at 4829.131 kb on - strand, within AO353_22050at 4829.131 kb on - strand, within AO353_22050at 4829.191 kb on + strand, within AO353_22050at 4829.192 kb on - strand, within AO353_22050at 4829.192 kb on - strand, within AO353_22050at 4829.286 kb on + strand, within AO353_22050at 4829.286 kb on + strand, within AO353_22050at 4829.286 kb on + strand, within AO353_22050at 4829.287 kb on - strand, within AO353_22050at 4829.287 kb on - strand, within AO353_22050at 4829.287 kb on - strand, within AO353_22050at 4829.287 kb on - strand, within AO353_22050at 4829.287 kb on - strand, within AO353_22050at 4829.287 kb on - strand, within AO353_22050at 4829.287 kb on - strand, within AO353_22050at 4829.403 kb on + strand, within AO353_22050at 4829.405 kb on + strand, within AO353_22050at 4829.406 kb on - strand, within AO353_22050at 4829.678 kb on - strandat 4829.678 kb on - strandat 4829.721 kb on + strandat 4829.722 kb on - strandat 4829.722 kb on - strandat 4829.782 kb on + strandat 4829.812 kb on + strandat 4829.812 kb on + strandat 4829.813 kb on - strandat 4829.848 kb on + strand, within AO353_22055at 4829.848 kb on + strand, within AO353_22055at 4829.848 kb on + strand, within AO353_22055at 4829.849 kb on - strand, within AO353_22055at 4829.849 kb on - strand, within AO353_22055at 4829.921 kb on + strand, within AO353_22055at 4829.921 kb on + strand, within AO353_22055at 4830.109 kb on + strand, within AO353_22055at 4830.109 kb on + strandat 4830.109 kb on + strand, within AO353_22055at 4830.171 kb on - strand, within AO353_22055at 4830.171 kb on - strand, within AO353_22055at 4830.277 kb on + strand, within AO353_22055at 4830.278 kb on - strand, within AO353_22055at 4830.295 kb on - strand, within AO353_22055at 4830.343 kb on - strand, within AO353_22055at 4830.350 kb on - strand, within AO353_22055at 4830.440 kb on + strand, within AO353_22055at 4830.440 kb on + strand, within AO353_22055at 4830.452 kb on - strand, within AO353_22055at 4830.510 kb on + strand, within AO353_22055at 4830.533 kb on - strand, within AO353_22055at 4831.116 kb on - strandat 4831.131 kb on - strandat 4831.131 kb on - strandat 4831.131 kb on - strandat 4831.131 kb on - strandat 4831.131 kb on - strandat 4831.131 kb on - strandat 4831.131 kb on - strandat 4831.131 kb on - strandat 4831.135 kb on - strandat 4831.135 kb on - strandat 4831.161 kb on - strandat 4831.184 kb on + strandat 4831.229 kb on - strandat 4831.229 kb on - strandat 4831.242 kb on + strandat 4831.420 kb on + strandat 4831.421 kb on - strandat 4831.421 kb on - strandat 4831.421 kb on - strandat 4831.478 kb on - strandat 4831.478 kb on - strandat 4831.478 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
remove
4,828,784 - -2.3
4,828,818 + +0.5
4,828,819 - +0.3
4,828,819 - -1.9
4,828,929 + AO353_22050 0.18 +2.2
4,828,930 - AO353_22050 0.18 -1.6
4,829,050 - AO353_22050 0.31 -1.3
4,829,130 + AO353_22050 0.39 -0.3
4,829,131 - AO353_22050 0.39 +0.4
4,829,131 - AO353_22050 0.39 +0.0
4,829,131 - AO353_22050 0.39 -2.3
4,829,131 - AO353_22050 0.39 +1.1
4,829,191 + AO353_22050 0.45 -0.3
4,829,192 - AO353_22050 0.45 -2.3
4,829,192 - AO353_22050 0.45 -2.1
4,829,286 + AO353_22050 0.54 -0.3
4,829,286 + AO353_22050 0.54 -0.3
4,829,286 + AO353_22050 0.54 -0.3
4,829,287 - AO353_22050 0.54 -0.3
4,829,287 - AO353_22050 0.54 +1.3
4,829,287 - AO353_22050 0.54 -1.3
4,829,287 - AO353_22050 0.54 -1.0
4,829,287 - AO353_22050 0.54 -1.9
4,829,287 - AO353_22050 0.54 +1.3
4,829,287 - AO353_22050 0.54 -1.0
4,829,403 + AO353_22050 0.66 -0.3
4,829,405 + AO353_22050 0.66 +1.6
4,829,406 - AO353_22050 0.66 +1.7
4,829,678 - -1.3
4,829,678 - -1.3
4,829,721 + -1.3
4,829,722 - +0.3
4,829,722 - +2.1
4,829,782 + +3.0
4,829,812 + -1.3
4,829,812 + +0.4
4,829,813 - -1.9
4,829,848 + AO353_22055 0.11 -0.3
4,829,848 + AO353_22055 0.11 +1.7
4,829,848 + AO353_22055 0.11 -0.3
4,829,849 - AO353_22055 0.11 -0.3
4,829,849 - AO353_22055 0.11 +0.9
4,829,921 + AO353_22055 0.19 +0.7
4,829,921 + AO353_22055 0.19 -1.0
4,830,109 + AO353_22055 0.40 +1.7
4,830,109 + +1.7
4,830,109 + AO353_22055 0.40 -1.0
4,830,171 - AO353_22055 0.47 -1.9
4,830,171 - AO353_22055 0.47 +3.5
4,830,277 + AO353_22055 0.59 +1.1
4,830,278 - AO353_22055 0.59 +0.6
4,830,295 - AO353_22055 0.61 +2.3
4,830,343 - AO353_22055 0.66 -1.6
4,830,350 - AO353_22055 0.67 +0.5
4,830,440 + AO353_22055 0.77 +1.9
4,830,440 + AO353_22055 0.77 -1.9
4,830,452 - AO353_22055 0.79 -3.3
4,830,510 + AO353_22055 0.85 -0.3
4,830,533 - AO353_22055 0.88 +3.2
4,831,116 - +0.3
4,831,131 - +1.5
4,831,131 - -0.9
4,831,131 - +0.1
4,831,131 - -1.3
4,831,131 - +1.5
4,831,131 - +3.4
4,831,131 - -0.9
4,831,131 - +2.0
4,831,135 - -1.3
4,831,135 - -0.0
4,831,161 - -0.3
4,831,184 + +4.5
4,831,229 - +0.1
4,831,229 - +0.7
4,831,242 + -0.3
4,831,420 + +1.1
4,831,421 - -1.3
4,831,421 - +2.3
4,831,421 - +0.7
4,831,478 - -0.3
4,831,478 - +2.5
4,831,478 - +1.3

Or see this region's nucleotide sequence