Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_21555 and AO353_21560 are separated by 226 nucleotides AO353_21560 and AO353_21565 are separated by 62 nucleotides AO353_21565 and AO353_21570 are separated by 18 nucleotides AO353_21570 and AO353_21575 overlap by 4 nucleotides
AO353_21555: AO353_21555 - type VI secretion protein, at 4,718,531 to 4,719,103
_21555
AO353_21560: AO353_21560 - type VI secretion protein, at 4,719,330 to 4,719,779
_21560
AO353_21565: AO353_21565 - type VI secretion protein, at 4,719,842 to 4,721,173
_21565
AO353_21570: AO353_21570 - type VI secretion system protein ImpK, at 4,721,192 to 4,721,959
_21570
AO353_21575: AO353_21575 - type VI secretion system protein ImpL, at 4,721,956 to 4,725,774
_21575
Position (kb)
4719
4720
4721
4722 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4719.026 kb on - strand, within AO353_21555 at 4719.026 kb on - strand, within AO353_21555 at 4719.029 kb on + strand, within AO353_21555 at 4719.029 kb on + strand, within AO353_21555 at 4719.029 kb on + strand, within AO353_21555 at 4719.030 kb on - strand, within AO353_21555 at 4719.042 kb on + strand, within AO353_21555 at 4719.042 kb on + strand, within AO353_21555 at 4719.042 kb on + strand, within AO353_21555 at 4719.042 kb on + strand, within AO353_21555 at 4719.042 kb on + strand, within AO353_21555 at 4719.042 kb on + strand, within AO353_21555 at 4719.042 kb on + strand, within AO353_21555 at 4719.043 kb on - strand, within AO353_21555 at 4719.043 kb on - strand, within AO353_21555 at 4719.043 kb on - strand, within AO353_21555 at 4719.043 kb on - strand, within AO353_21555 at 4719.092 kb on - strand at 4719.092 kb on - strand at 4719.177 kb on + strand at 4719.178 kb on - strand at 4719.178 kb on - strand at 4719.182 kb on + strand at 4719.251 kb on + strand at 4719.251 kb on + strand at 4719.251 kb on + strand at 4719.263 kb on + strand at 4719.274 kb on + strand at 4719.274 kb on + strand at 4719.275 kb on - strand at 4719.277 kb on - strand at 4719.277 kb on - strand at 4719.277 kb on - strand at 4719.348 kb on - strand at 4719.368 kb on - strand at 4719.368 kb on - strand at 4719.675 kb on + strand, within AO353_21560 at 4719.675 kb on + strand, within AO353_21560 at 4719.675 kb on + strand, within AO353_21560 at 4719.675 kb on + strand, within AO353_21560 at 4719.675 kb on + strand, within AO353_21560 at 4719.676 kb on - strand, within AO353_21560 at 4719.676 kb on - strand, within AO353_21560 at 4719.676 kb on - strand, within AO353_21560 at 4719.676 kb on - strand, within AO353_21560 at 4719.676 kb on - strand, within AO353_21560 at 4719.676 kb on - strand, within AO353_21560 at 4719.676 kb on - strand, within AO353_21560 at 4719.676 kb on - strand, within AO353_21560 at 4719.677 kb on + strand, within AO353_21560 at 4719.678 kb on - strand, within AO353_21560 at 4719.842 kb on - strand at 4719.853 kb on - strand at 4720.154 kb on + strand, within AO353_21565 at 4720.191 kb on + strand, within AO353_21565 at 4720.191 kb on + strand, within AO353_21565 at 4720.191 kb on + strand, within AO353_21565 at 4720.192 kb on - strand, within AO353_21565 at 4720.192 kb on - strand, within AO353_21565 at 4720.192 kb on - strand, within AO353_21565 at 4720.194 kb on + strand, within AO353_21565 at 4720.195 kb on - strand, within AO353_21565 at 4720.273 kb on + strand, within AO353_21565 at 4720.374 kb on + strand, within AO353_21565 at 4720.385 kb on + strand at 4720.385 kb on + strand, within AO353_21565 at 4720.386 kb on - strand, within AO353_21565 at 4720.622 kb on + strand, within AO353_21565 at 4720.622 kb on + strand, within AO353_21565 at 4720.622 kb on + strand, within AO353_21565 at 4720.622 kb on + strand, within AO353_21565 at 4720.622 kb on + strand, within AO353_21565 at 4720.622 kb on + strand, within AO353_21565 at 4720.622 kb on + strand, within AO353_21565 at 4720.622 kb on + strand, within AO353_21565 at 4720.622 kb on + strand, within AO353_21565 at 4720.622 kb on + strand, within AO353_21565 at 4720.622 kb on + strand, within AO353_21565 at 4720.623 kb on - strand, within AO353_21565 at 4720.623 kb on - strand, within AO353_21565 at 4720.623 kb on - strand, within AO353_21565 at 4720.623 kb on - strand, within AO353_21565 at 4720.623 kb on - strand, within AO353_21565 at 4720.623 kb on - strand, within AO353_21565 at 4720.623 kb on - strand, within AO353_21565 at 4720.623 kb on - strand, within AO353_21565 at 4720.623 kb on - strand, within AO353_21565 at 4720.725 kb on - strand, within AO353_21565 at 4720.734 kb on + strand, within AO353_21565 at 4720.735 kb on - strand, within AO353_21565 at 4721.015 kb on + strand, within AO353_21565 at 4721.015 kb on + strand, within AO353_21565 at 4721.033 kb on - strand, within AO353_21565 at 4721.432 kb on + strand, within AO353_21570 at 4721.432 kb on + strand, within AO353_21570 at 4721.433 kb on - strand, within AO353_21570 at 4721.433 kb on - strand, within AO353_21570 at 4721.511 kb on + strand, within AO353_21570 at 4721.525 kb on + strand, within AO353_21570 at 4721.525 kb on + strand, within AO353_21570 at 4721.525 kb on + strand at 4721.525 kb on + strand, within AO353_21570 at 4721.526 kb on - strand, within AO353_21570 at 4721.526 kb on - strand, within AO353_21570 at 4721.526 kb on - strand, within AO353_21570 at 4721.526 kb on - strand, within AO353_21570 at 4721.618 kb on + strand, within AO353_21570 at 4721.618 kb on + strand, within AO353_21570 at 4721.618 kb on + strand, within AO353_21570 at 4721.618 kb on + strand, within AO353_21570 at 4721.634 kb on + strand, within AO353_21570 at 4722.070 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 4,719,026 - AO353_21555 0.86 +2.5 4,719,026 - AO353_21555 0.86 -2.6 4,719,029 + AO353_21555 0.87 -3.6 4,719,029 + AO353_21555 0.87 -0.3 4,719,029 + AO353_21555 0.87 -1.9 4,719,030 - AO353_21555 0.87 -1.3 4,719,042 + AO353_21555 0.89 -0.3 4,719,042 + AO353_21555 0.89 -0.6 4,719,042 + AO353_21555 0.89 -2.6 4,719,042 + AO353_21555 0.89 -2.6 4,719,042 + AO353_21555 0.89 -2.4 4,719,042 + AO353_21555 0.89 -1.0 4,719,042 + AO353_21555 0.89 -2.3 4,719,043 - AO353_21555 0.89 -0.3 4,719,043 - AO353_21555 0.89 -1.1 4,719,043 - AO353_21555 0.89 +1.1 4,719,043 - AO353_21555 0.89 +1.1 4,719,092 - -2.3 4,719,092 - -1.3 4,719,177 + -2.9 4,719,178 - -1.9 4,719,178 - -0.3 4,719,182 + -1.9 4,719,251 + +1.7 4,719,251 + -0.3 4,719,251 + -1.3 4,719,263 + +0.3 4,719,274 + +2.1 4,719,274 + -1.9 4,719,275 - -1.0 4,719,277 - +1.1 4,719,277 - -0.3 4,719,277 - +1.5 4,719,348 - -3.1 4,719,368 - -2.6 4,719,368 - +2.1 4,719,675 + AO353_21560 0.77 +0.1 4,719,675 + AO353_21560 0.77 +1.7 4,719,675 + AO353_21560 0.77 -1.3 4,719,675 + AO353_21560 0.77 -0.3 4,719,675 + AO353_21560 0.77 -0.3 4,719,676 - AO353_21560 0.77 -1.3 4,719,676 - AO353_21560 0.77 +1.3 4,719,676 - AO353_21560 0.77 -3.4 4,719,676 - AO353_21560 0.77 -1.9 4,719,676 - AO353_21560 0.77 -1.3 4,719,676 - AO353_21560 0.77 +1.7 4,719,676 - AO353_21560 0.77 -0.3 4,719,676 - AO353_21560 0.77 -0.5 4,719,677 + AO353_21560 0.77 +1.0 4,719,678 - AO353_21560 0.77 -0.3 4,719,842 - -0.3 4,719,853 - +3.4 4,720,154 + AO353_21565 0.23 +0.4 4,720,191 + AO353_21565 0.26 -2.3 4,720,191 + AO353_21565 0.26 +2.9 4,720,191 + AO353_21565 0.26 -0.3 4,720,192 - AO353_21565 0.26 +3.2 4,720,192 - AO353_21565 0.26 -0.3 4,720,192 - AO353_21565 0.26 -0.3 4,720,194 + AO353_21565 0.26 +1.3 4,720,195 - AO353_21565 0.27 -1.9 4,720,273 + AO353_21565 0.32 -1.3 4,720,374 + AO353_21565 0.40 +0.7 4,720,385 + +0.7 4,720,385 + AO353_21565 0.41 -2.3 4,720,386 - AO353_21565 0.41 +3.6 4,720,622 + AO353_21565 0.59 +0.7 4,720,622 + AO353_21565 0.59 -2.3 4,720,622 + AO353_21565 0.59 -0.3 4,720,622 + AO353_21565 0.59 -1.9 4,720,622 + AO353_21565 0.59 -2.3 4,720,622 + AO353_21565 0.59 +0.1 4,720,622 + AO353_21565 0.59 -0.3 4,720,622 + AO353_21565 0.59 -0.3 4,720,622 + AO353_21565 0.59 +1.3 4,720,622 + AO353_21565 0.59 -1.3 4,720,622 + AO353_21565 0.59 -1.3 4,720,623 - AO353_21565 0.59 -2.6 4,720,623 - AO353_21565 0.59 +1.0 4,720,623 - AO353_21565 0.59 -0.3 4,720,623 - AO353_21565 0.59 +3.1 4,720,623 - AO353_21565 0.59 +1.3 4,720,623 - AO353_21565 0.59 -2.3 4,720,623 - AO353_21565 0.59 -0.3 4,720,623 - AO353_21565 0.59 +0.7 4,720,623 - AO353_21565 0.59 +1.3 4,720,725 - AO353_21565 0.66 -2.3 4,720,734 + AO353_21565 0.67 -2.6 4,720,735 - AO353_21565 0.67 -0.3 4,721,015 + AO353_21565 0.88 +2.1 4,721,015 + AO353_21565 0.88 -1.1 4,721,033 - AO353_21565 0.89 -0.5 4,721,432 + AO353_21570 0.31 -1.9 4,721,432 + AO353_21570 0.31 -2.3 4,721,433 - AO353_21570 0.31 +0.2 4,721,433 - AO353_21570 0.31 +0.7 4,721,511 + AO353_21570 0.42 -2.3 4,721,525 + AO353_21570 0.43 -2.3 4,721,525 + AO353_21570 0.43 +1.1 4,721,525 + -0.3 4,721,525 + AO353_21570 0.43 -0.3 4,721,526 - AO353_21570 0.43 -1.0 4,721,526 - AO353_21570 0.43 +2.1 4,721,526 - AO353_21570 0.43 +1.7 4,721,526 - AO353_21570 0.43 -0.3 4,721,618 + AO353_21570 0.55 -2.3 4,721,618 + AO353_21570 0.55 -1.3 4,721,618 + AO353_21570 0.55 -0.1 4,721,618 + AO353_21570 0.55 -1.9 4,721,634 + AO353_21570 0.58 +1.7 4,722,070 + -1.3
Or see this region's nucleotide sequence