Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21305

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21300 and AO353_21305 are separated by 3 nucleotidesAO353_21305 and AO353_21310 overlap by 1 nucleotides AO353_21300: AO353_21300 - glycolate oxidase iron-sulfur subunit, at 4,660,895 to 4,662,112 _21300 AO353_21305: AO353_21305 - glycolate oxidase, at 4,662,116 to 4,663,174 _21305 AO353_21310: AO353_21310 - glycolate oxidase subunit GlcD, at 4,663,174 to 4,664,673 _21310 Position (kb) 4662 4663 4664Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4661.145 kb on - strand, within AO353_21300at 4661.145 kb on - strand, within AO353_21300at 4661.145 kb on - strand, within AO353_21300at 4661.473 kb on - strand, within AO353_21300at 4661.510 kb on - strand, within AO353_21300at 4661.955 kb on + strand, within AO353_21300at 4661.955 kb on + strand, within AO353_21300at 4661.955 kb on + strand, within AO353_21300at 4661.955 kb on + strand, within AO353_21300at 4661.956 kb on - strand, within AO353_21300at 4661.956 kb on - strand, within AO353_21300at 4662.000 kb on + strandat 4662.000 kb on + strandat 4662.001 kb on - strandat 4662.001 kb on - strandat 4662.001 kb on - strandat 4662.129 kb on + strandat 4662.130 kb on - strandat 4662.130 kb on - strandat 4662.130 kb on - strandat 4662.130 kb on - strandat 4662.130 kb on - strandat 4662.247 kb on - strand, within AO353_21305at 4662.247 kb on - strand, within AO353_21305at 4662.247 kb on - strand, within AO353_21305at 4662.775 kb on + strand, within AO353_21305at 4662.851 kb on + strand, within AO353_21305at 4662.965 kb on - strand, within AO353_21305at 4663.002 kb on + strandat 4663.002 kb on + strand, within AO353_21305at 4663.003 kb on - strand, within AO353_21305at 4663.003 kb on - strand, within AO353_21305at 4663.003 kb on - strand, within AO353_21305at 4663.614 kb on + strand, within AO353_21310at 4663.614 kb on + strand, within AO353_21310at 4663.614 kb on + strand, within AO353_21310at 4663.615 kb on - strand, within AO353_21310at 4663.615 kb on - strand, within AO353_21310at 4663.615 kb on - strand, within AO353_21310at 4663.615 kb on - strand, within AO353_21310at 4663.615 kb on - strand, within AO353_21310at 4663.619 kb on + strand, within AO353_21310at 4663.619 kb on + strand, within AO353_21310at 4663.619 kb on + strand, within AO353_21310at 4663.619 kb on + strandat 4663.619 kb on + strand, within AO353_21310at 4663.619 kb on + strand, within AO353_21310at 4663.619 kb on + strand, within AO353_21310at 4663.619 kb on + strand, within AO353_21310at 4663.620 kb on - strand, within AO353_21310at 4663.620 kb on - strand, within AO353_21310at 4663.620 kb on - strand, within AO353_21310at 4663.620 kb on - strand, within AO353_21310at 4663.622 kb on + strand, within AO353_21310at 4663.622 kb on + strand, within AO353_21310at 4663.622 kb on + strand, within AO353_21310at 4663.623 kb on - strand, within AO353_21310at 4663.623 kb on - strand, within AO353_21310at 4663.623 kb on - strand, within AO353_21310at 4663.623 kb on - strand, within AO353_21310at 4663.768 kb on + strand, within AO353_21310at 4663.768 kb on + strand, within AO353_21310at 4663.768 kb on + strand, within AO353_21310at 4663.769 kb on - strand, within AO353_21310at 4663.769 kb on - strand, within AO353_21310at 4664.093 kb on - strand, within AO353_21310at 4664.093 kb on - strand, within AO353_21310at 4664.159 kb on + strand, within AO353_21310at 4664.159 kb on + strand, within AO353_21310

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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4,661,145 - AO353_21300 0.21 +3.2
4,661,145 - AO353_21300 0.21 -2.2
4,661,145 - AO353_21300 0.21 -0.2
4,661,473 - AO353_21300 0.47 -2.2
4,661,510 - AO353_21300 0.50 -0.6
4,661,955 + AO353_21300 0.87 -0.2
4,661,955 + AO353_21300 0.87 +0.9
4,661,955 + AO353_21300 0.87 -1.2
4,661,955 + AO353_21300 0.87 -1.6
4,661,956 - AO353_21300 0.87 +0.5
4,661,956 - AO353_21300 0.87 +3.0
4,662,000 + -0.2
4,662,000 + +1.4
4,662,001 - -2.8
4,662,001 - +2.4
4,662,001 - +1.4
4,662,129 + -0.2
4,662,130 - +1.0
4,662,130 - -2.5
4,662,130 - -1.0
4,662,130 - -1.8
4,662,130 - +2.4
4,662,247 - AO353_21305 0.12 -2.2
4,662,247 - AO353_21305 0.12 +0.1
4,662,247 - AO353_21305 0.12 +0.2
4,662,775 + AO353_21305 0.62 -4.1
4,662,851 + AO353_21305 0.69 +0.8
4,662,965 - AO353_21305 0.80 -1.2
4,663,002 + -0.2
4,663,002 + AO353_21305 0.84 -0.2
4,663,003 - AO353_21305 0.84 +2.2
4,663,003 - AO353_21305 0.84 -1.2
4,663,003 - AO353_21305 0.84 +1.8
4,663,614 + AO353_21310 0.29 +0.7
4,663,614 + AO353_21310 0.29 -0.2
4,663,614 + AO353_21310 0.29 +0.3
4,663,615 - AO353_21310 0.29 -1.2
4,663,615 - AO353_21310 0.29 +1.1
4,663,615 - AO353_21310 0.29 -1.2
4,663,615 - AO353_21310 0.29 +0.4
4,663,615 - AO353_21310 0.29 -2.2
4,663,619 + AO353_21310 0.30 +2.1
4,663,619 + AO353_21310 0.30 -1.8
4,663,619 + AO353_21310 0.30 -1.2
4,663,619 + -0.2
4,663,619 + AO353_21310 0.30 -0.2
4,663,619 + AO353_21310 0.30 -2.2
4,663,619 + AO353_21310 0.30 -0.2
4,663,619 + AO353_21310 0.30 +1.4
4,663,620 - AO353_21310 0.30 -1.2
4,663,620 - AO353_21310 0.30 -2.2
4,663,620 - AO353_21310 0.30 -0.2
4,663,620 - AO353_21310 0.30 -0.2
4,663,622 + AO353_21310 0.30 -0.2
4,663,622 + AO353_21310 0.30 -2.2
4,663,622 + AO353_21310 0.30 -1.2
4,663,623 - AO353_21310 0.30 +2.8
4,663,623 - AO353_21310 0.30 +0.3
4,663,623 - AO353_21310 0.30 -0.2
4,663,623 - AO353_21310 0.30 -1.2
4,663,768 + AO353_21310 0.40 +0.8
4,663,768 + AO353_21310 0.40 -1.2
4,663,768 + AO353_21310 0.40 -0.2
4,663,769 - AO353_21310 0.40 +3.1
4,663,769 - AO353_21310 0.40 +1.0
4,664,093 - AO353_21310 0.61 -0.2
4,664,093 - AO353_21310 0.61 -0.0
4,664,159 + AO353_21310 0.66 -1.4
4,664,159 + AO353_21310 0.66 -1.8

Or see this region's nucleotide sequence