Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_20900 and AO353_20905 are separated by 3 nucleotides AO353_20905 and AO353_20910 overlap by 20 nucleotides AO353_20910 and AO353_20915 are separated by 89 nucleotides
AO353_20900: AO353_20900 - phenylalanine--tRNA ligase subunit beta, at 4,571,874 to 4,574,252
_20900
AO353_20905: AO353_20905 - integration host factor subunit alpha, at 4,574,256 to 4,574,558
_20905
AO353_20910: AO353_20910 - MerR family transcriptional regulator, at 4,574,539 to 4,574,895
_20910
AO353_20915: AO353_20915 - tRNA-Pro, at 4,574,985 to 4,575,061
_20915
Position (kb)
4574
4575 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4574.295 kb on + strand, within AO353_20905 at 4574.295 kb on + strand, within AO353_20905 at 4574.295 kb on + strand, within AO353_20905 at 4574.295 kb on + strand, within AO353_20905 at 4574.538 kb on + strand at 4574.538 kb on + strand at 4574.538 kb on + strand at 4574.539 kb on - strand at 4574.591 kb on - strand, within AO353_20910 at 4574.647 kb on + strand, within AO353_20910 at 4574.707 kb on + strand, within AO353_20910 at 4574.708 kb on - strand, within AO353_20910 at 4574.708 kb on - strand, within AO353_20910 at 4574.708 kb on - strand, within AO353_20910 at 4574.708 kb on - strand, within AO353_20910 at 4574.750 kb on + strand, within AO353_20910 at 4574.750 kb on + strand, within AO353_20910 at 4574.750 kb on + strand, within AO353_20910 at 4574.751 kb on - strand, within AO353_20910 at 4574.755 kb on + strand, within AO353_20910 at 4574.755 kb on + strand, within AO353_20910 at 4574.755 kb on + strand, within AO353_20910 at 4574.756 kb on - strand, within AO353_20910 at 4574.756 kb on - strand, within AO353_20910 at 4574.756 kb on - strand, within AO353_20910 at 4574.756 kb on - strand, within AO353_20910 at 4574.756 kb on - strand, within AO353_20910 at 4574.830 kb on + strand, within AO353_20910 at 4574.830 kb on + strand, within AO353_20910 at 4574.830 kb on + strand, within AO353_20910 at 4574.831 kb on - strand, within AO353_20910 at 4574.938 kb on - strand at 4574.981 kb on + strand at 4575.013 kb on + strand, within AO353_20915 at 4575.062 kb on + strand at 4575.194 kb on + strand at 4575.194 kb on + strand at 4575.194 kb on + strand at 4575.195 kb on - strand at 4575.195 kb on - strand at 4575.331 kb on - strand at 4575.366 kb on - strand at 4575.366 kb on - strand at 4575.366 kb on - strand at 4575.366 kb on - strand at 4575.583 kb on + strand at 4575.584 kb on - strand at 4575.682 kb on + strand at 4575.683 kb on - strand at 4575.683 kb on - strand at 4575.683 kb on - strand at 4575.683 kb on - strand at 4575.683 kb on - strand at 4575.740 kb on - strand at 4575.740 kb on - strand at 4575.740 kb on - strand at 4575.740 kb on - strand at 4575.794 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 4,574,295 + AO353_20905 0.13 -2.2 4,574,295 + AO353_20905 0.13 -0.8 4,574,295 + AO353_20905 0.13 -1.2 4,574,295 + AO353_20905 0.13 -1.8 4,574,538 + -2.2 4,574,538 + -0.2 4,574,538 + +1.4 4,574,539 - -1.8 4,574,591 - AO353_20910 0.15 -2.5 4,574,647 + AO353_20910 0.30 -2.2 4,574,707 + AO353_20910 0.47 -2.5 4,574,708 - AO353_20910 0.47 -2.2 4,574,708 - AO353_20910 0.47 -2.7 4,574,708 - AO353_20910 0.47 -1.8 4,574,708 - AO353_20910 0.47 -2.2 4,574,750 + AO353_20910 0.59 -2.8 4,574,750 + AO353_20910 0.59 +1.4 4,574,750 + AO353_20910 0.59 -1.6 4,574,751 - AO353_20910 0.59 +0.0 4,574,755 + AO353_20910 0.61 -1.8 4,574,755 + AO353_20910 0.61 +1.1 4,574,755 + AO353_20910 0.61 +3.2 4,574,756 - AO353_20910 0.61 -2.2 4,574,756 - AO353_20910 0.61 -1.2 4,574,756 - AO353_20910 0.61 -2.2 4,574,756 - AO353_20910 0.61 -0.2 4,574,756 - AO353_20910 0.61 -0.2 4,574,830 + AO353_20910 0.82 -0.8 4,574,830 + AO353_20910 0.82 -1.2 4,574,830 + AO353_20910 0.82 -1.2 4,574,831 - AO353_20910 0.82 -1.8 4,574,938 - +2.5 4,574,981 + -2.2 4,575,013 + AO353_20915 0.36 -2.5 4,575,062 + -2.4 4,575,194 + -0.2 4,575,194 + +1.4 4,575,194 + -2.2 4,575,195 - -1.2 4,575,195 - -1.2 4,575,331 - -2.2 4,575,366 - -1.8 4,575,366 - +0.0 4,575,366 - -1.8 4,575,366 - +0.3 4,575,583 + -0.5 4,575,584 - -3.2 4,575,682 + -0.2 4,575,683 - -1.2 4,575,683 - -0.5 4,575,683 - -1.2 4,575,683 - -3.0 4,575,683 - -1.9 4,575,740 - -1.2 4,575,740 - +1.4 4,575,740 - -1.2 4,575,740 - -0.2 4,575,794 - +0.1
Or see this region's nucleotide sequence