Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20800

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_20790 and AO353_20795 are separated by 14 nucleotidesAO353_20795 and AO353_20800 are separated by 4 nucleotidesAO353_20800 and AO353_20805 are separated by 196 nucleotides AO353_20790: AO353_20790 - penicillin-binding protein activator LpoB, at 4,554,522 to 4,554,887 _20790 AO353_20795: AO353_20795 - deoxyribonuclease, at 4,554,902 to 4,555,594 _20795 AO353_20800: AO353_20800 - hypothetical protein, at 4,555,599 to 4,555,880 _20800 AO353_20805: AO353_20805 - glutaminase, at 4,556,077 to 4,557,165 _20805 Position (kb) 4555 4556Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4554.729 kb on + strand, within AO353_20790at 4554.729 kb on + strand, within AO353_20790at 4554.729 kb on + strand, within AO353_20790at 4554.729 kb on + strand, within AO353_20790at 4554.730 kb on - strand, within AO353_20790at 4554.730 kb on - strand, within AO353_20790at 4554.730 kb on - strand, within AO353_20790at 4554.730 kb on - strand, within AO353_20790at 4554.730 kb on - strand, within AO353_20790at 4554.730 kb on - strand, within AO353_20790at 4554.749 kb on + strand, within AO353_20790at 4554.885 kb on + strandat 4554.885 kb on + strandat 4554.886 kb on - strandat 4554.886 kb on - strandat 4554.886 kb on - strandat 4554.886 kb on - strandat 4554.886 kb on - strandat 4554.886 kb on - strandat 4555.005 kb on + strand, within AO353_20795at 4555.026 kb on + strand, within AO353_20795at 4555.026 kb on + strand, within AO353_20795at 4555.026 kb on + strand, within AO353_20795at 4555.063 kb on - strand, within AO353_20795at 4555.077 kb on + strand, within AO353_20795at 4555.077 kb on + strand, within AO353_20795at 4555.077 kb on + strand, within AO353_20795at 4555.078 kb on - strand, within AO353_20795at 4555.078 kb on - strand, within AO353_20795at 4555.078 kb on - strand, within AO353_20795at 4555.078 kb on - strand, within AO353_20795at 4555.078 kb on - strand, within AO353_20795at 4555.078 kb on - strand, within AO353_20795at 4555.083 kb on + strand, within AO353_20795at 4555.083 kb on + strand, within AO353_20795at 4555.083 kb on + strand, within AO353_20795at 4555.083 kb on + strand, within AO353_20795at 4555.083 kb on + strand, within AO353_20795at 4555.083 kb on + strand, within AO353_20795at 4555.084 kb on - strand, within AO353_20795at 4555.084 kb on - strand, within AO353_20795at 4555.084 kb on - strand, within AO353_20795at 4555.084 kb on - strand, within AO353_20795at 4555.084 kb on - strand, within AO353_20795at 4555.084 kb on - strand, within AO353_20795at 4555.275 kb on + strand, within AO353_20795at 4555.275 kb on + strand, within AO353_20795at 4555.275 kb on + strand, within AO353_20795at 4555.275 kb on + strand, within AO353_20795at 4555.275 kb on + strand, within AO353_20795at 4555.275 kb on + strand, within AO353_20795at 4555.275 kb on + strandat 4555.275 kb on + strand, within AO353_20795at 4555.275 kb on + strand, within AO353_20795at 4555.275 kb on + strand, within AO353_20795at 4555.275 kb on + strand, within AO353_20795at 4555.276 kb on - strand, within AO353_20795at 4555.276 kb on - strand, within AO353_20795at 4555.276 kb on - strand, within AO353_20795at 4555.276 kb on - strand, within AO353_20795at 4555.276 kb on - strand, within AO353_20795at 4555.276 kb on - strand, within AO353_20795at 4555.276 kb on - strand, within AO353_20795at 4555.276 kb on - strand, within AO353_20795at 4555.399 kb on + strand, within AO353_20795at 4555.399 kb on + strand, within AO353_20795at 4555.399 kb on + strand, within AO353_20795at 4555.399 kb on + strand, within AO353_20795at 4555.447 kb on - strand, within AO353_20795at 4555.447 kb on - strand, within AO353_20795at 4555.461 kb on + strand, within AO353_20795at 4555.461 kb on + strand, within AO353_20795at 4555.461 kb on + strand, within AO353_20795at 4555.461 kb on + strand, within AO353_20795at 4555.461 kb on + strand, within AO353_20795at 4555.461 kb on + strand, within AO353_20795at 4555.461 kb on + strand, within AO353_20795at 4555.462 kb on - strand, within AO353_20795at 4555.462 kb on - strand, within AO353_20795at 4555.462 kb on - strand, within AO353_20795at 4555.462 kb on - strand, within AO353_20795at 4555.462 kb on - strand, within AO353_20795at 4555.462 kb on - strand, within AO353_20795at 4555.462 kb on - strand, within AO353_20795at 4555.462 kb on - strand, within AO353_20795at 4555.462 kb on - strand, within AO353_20795at 4555.462 kb on - strand, within AO353_20795at 4555.485 kb on + strand, within AO353_20795at 4555.485 kb on + strand, within AO353_20795at 4555.485 kb on + strand, within AO353_20795at 4555.485 kb on + strand, within AO353_20795at 4555.486 kb on - strand, within AO353_20795at 4555.486 kb on - strand, within AO353_20795at 4555.486 kb on - strand, within AO353_20795at 4555.486 kb on - strand, within AO353_20795at 4555.711 kb on - strand, within AO353_20800at 4555.807 kb on + strand, within AO353_20800at 4555.916 kb on - strandat 4555.916 kb on - strandat 4555.960 kb on + strandat 4555.976 kb on + strandat 4555.977 kb on - strandat 4555.986 kb on + strandat 4555.987 kb on - strandat 4555.987 kb on - strandat 4555.987 kb on - strandat 4555.987 kb on - strandat 4555.987 kb on - strandat 4556.009 kb on + strandat 4556.009 kb on + strandat 4556.010 kb on - strandat 4556.010 kb on - strandat 4556.010 kb on - strandat 4556.010 kb on - strandat 4556.082 kb on - strandat 4556.109 kb on + strandat 4556.109 kb on + strandat 4556.109 kb on + strandat 4556.109 kb on + strandat 4556.109 kb on + strandat 4556.110 kb on - strandat 4556.110 kb on - strandat 4556.192 kb on + strand, within AO353_20805at 4556.192 kb on + strand, within AO353_20805at 4556.192 kb on + strand, within AO353_20805at 4556.192 kb on + strand, within AO353_20805at 4556.192 kb on + strand, within AO353_20805at 4556.192 kb on + strand, within AO353_20805at 4556.192 kb on + strand, within AO353_20805at 4556.192 kb on + strand, within AO353_20805at 4556.192 kb on + strand, within AO353_20805at 4556.192 kb on + strand, within AO353_20805at 4556.192 kb on + strand, within AO353_20805at 4556.192 kb on + strand, within AO353_20805at 4556.192 kb on + strand, within AO353_20805at 4556.192 kb on + strand, within AO353_20805at 4556.193 kb on - strand, within AO353_20805at 4556.193 kb on - strand, within AO353_20805at 4556.193 kb on - strand, within AO353_20805at 4556.193 kb on - strand, within AO353_20805at 4556.193 kb on - strand, within AO353_20805at 4556.193 kb on - strand, within AO353_20805at 4556.193 kb on - strand, within AO353_20805at 4556.193 kb on - strand, within AO353_20805at 4556.193 kb on - strand, within AO353_20805at 4556.193 kb on - strand, within AO353_20805at 4556.193 kb on - strand, within AO353_20805at 4556.193 kb on - strand, within AO353_20805at 4556.193 kb on - strand, within AO353_20805at 4556.193 kb on - strand, within AO353_20805at 4556.378 kb on + strand, within AO353_20805at 4556.378 kb on + strand, within AO353_20805at 4556.378 kb on + strand, within AO353_20805at 4556.378 kb on + strand, within AO353_20805at 4556.378 kb on + strand, within AO353_20805at 4556.378 kb on + strand, within AO353_20805at 4556.378 kb on + strand, within AO353_20805at 4556.378 kb on + strand, within AO353_20805at 4556.379 kb on - strand, within AO353_20805at 4556.379 kb on - strand, within AO353_20805at 4556.379 kb on - strand, within AO353_20805at 4556.379 kb on - strand, within AO353_20805at 4556.379 kb on - strand, within AO353_20805at 4556.379 kb on - strand, within AO353_20805at 4556.379 kb on - strand, within AO353_20805at 4556.379 kb on - strand, within AO353_20805at 4556.379 kb on - strand, within AO353_20805at 4556.379 kb on - strand, within AO353_20805at 4556.379 kb on - strand, within AO353_20805at 4556.379 kb on - strand, within AO353_20805at 4556.402 kb on + strand, within AO353_20805at 4556.403 kb on - strand, within AO353_20805at 4556.403 kb on - strand, within AO353_20805at 4556.403 kb on - strand, within AO353_20805at 4556.408 kb on + strand, within AO353_20805at 4556.408 kb on + strand, within AO353_20805at 4556.409 kb on - strand, within AO353_20805at 4556.409 kb on - strand, within AO353_20805at 4556.409 kb on - strand, within AO353_20805at 4556.409 kb on - strand, within AO353_20805at 4556.499 kb on - strand, within AO353_20805at 4556.646 kb on + strand, within AO353_20805at 4556.669 kb on + strand, within AO353_20805at 4556.669 kb on + strand, within AO353_20805at 4556.669 kb on + strand, within AO353_20805at 4556.768 kb on + strand, within AO353_20805at 4556.768 kb on + strand, within AO353_20805at 4556.768 kb on + strand, within AO353_20805at 4556.768 kb on + strand, within AO353_20805at 4556.769 kb on - strand, within AO353_20805at 4556.769 kb on - strand, within AO353_20805at 4556.802 kb on + strand, within AO353_20805at 4556.802 kb on + strand, within AO353_20805at 4556.802 kb on + strand, within AO353_20805at 4556.802 kb on + strand, within AO353_20805at 4556.802 kb on + strand, within AO353_20805at 4556.803 kb on - strand, within AO353_20805

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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4,554,729 + AO353_20790 0.57 +1.4
4,554,729 + AO353_20790 0.57 -1.8
4,554,729 + AO353_20790 0.57 +1.8
4,554,729 + AO353_20790 0.57 +0.5
4,554,730 - AO353_20790 0.57 -1.8
4,554,730 - AO353_20790 0.57 -3.5
4,554,730 - AO353_20790 0.57 +0.8
4,554,730 - AO353_20790 0.57 -0.2
4,554,730 - AO353_20790 0.57 +0.8
4,554,730 - AO353_20790 0.57 +1.6
4,554,749 + AO353_20790 0.62 +1.2
4,554,885 + -2.2
4,554,885 + -0.5
4,554,886 - -0.8
4,554,886 - -2.0
4,554,886 - -1.2
4,554,886 - -1.2
4,554,886 - -3.0
4,554,886 - -1.8
4,555,005 + AO353_20795 0.15 +0.1
4,555,026 + AO353_20795 0.18 -1.8
4,555,026 + AO353_20795 0.18 -3.2
4,555,026 + AO353_20795 0.18 -0.2
4,555,063 - AO353_20795 0.23 -0.2
4,555,077 + AO353_20795 0.25 -0.2
4,555,077 + AO353_20795 0.25 -1.2
4,555,077 + AO353_20795 0.25 -0.2
4,555,078 - AO353_20795 0.25 -0.2
4,555,078 - AO353_20795 0.25 -0.2
4,555,078 - AO353_20795 0.25 -0.6
4,555,078 - AO353_20795 0.25 -1.2
4,555,078 - AO353_20795 0.25 +0.9
4,555,078 - AO353_20795 0.25 +1.8
4,555,083 + AO353_20795 0.26 -1.2
4,555,083 + AO353_20795 0.26 -1.8
4,555,083 + AO353_20795 0.26 +0.4
4,555,083 + AO353_20795 0.26 -3.2
4,555,083 + AO353_20795 0.26 -3.2
4,555,083 + AO353_20795 0.26 -0.2
4,555,084 - AO353_20795 0.26 +1.8
4,555,084 - AO353_20795 0.26 -0.2
4,555,084 - AO353_20795 0.26 -1.2
4,555,084 - AO353_20795 0.26 -0.2
4,555,084 - AO353_20795 0.26 -1.2
4,555,084 - AO353_20795 0.26 -0.0
4,555,275 + AO353_20795 0.54 -2.5
4,555,275 + AO353_20795 0.54 -1.2
4,555,275 + AO353_20795 0.54 -1.2
4,555,275 + AO353_20795 0.54 +0.4
4,555,275 + AO353_20795 0.54 +0.8
4,555,275 + AO353_20795 0.54 +0.8
4,555,275 + -1.2
4,555,275 + AO353_20795 0.54 -1.2
4,555,275 + AO353_20795 0.54 -1.2
4,555,275 + AO353_20795 0.54 +0.8
4,555,275 + AO353_20795 0.54 +0.2
4,555,276 - AO353_20795 0.54 -1.8
4,555,276 - AO353_20795 0.54 +2.4
4,555,276 - AO353_20795 0.54 -1.2
4,555,276 - AO353_20795 0.54 -0.6
4,555,276 - AO353_20795 0.54 -2.8
4,555,276 - AO353_20795 0.54 -1.2
4,555,276 - AO353_20795 0.54 -1.2
4,555,276 - AO353_20795 0.54 -2.5
4,555,399 + AO353_20795 0.72 -1.2
4,555,399 + AO353_20795 0.72 -1.0
4,555,399 + AO353_20795 0.72 -0.4
4,555,399 + AO353_20795 0.72 -1.2
4,555,447 - AO353_20795 0.79 -1.8
4,555,447 - AO353_20795 0.79 -1.2
4,555,461 + AO353_20795 0.81 -1.2
4,555,461 + AO353_20795 0.81 -1.8
4,555,461 + AO353_20795 0.81 +1.8
4,555,461 + AO353_20795 0.81 -0.2
4,555,461 + AO353_20795 0.81 -0.2
4,555,461 + AO353_20795 0.81 -0.2
4,555,461 + AO353_20795 0.81 -3.7
4,555,462 - AO353_20795 0.81 -1.8
4,555,462 - AO353_20795 0.81 -1.2
4,555,462 - AO353_20795 0.81 -2.2
4,555,462 - AO353_20795 0.81 -2.5
4,555,462 - AO353_20795 0.81 -1.8
4,555,462 - AO353_20795 0.81 -0.6
4,555,462 - AO353_20795 0.81 -3.0
4,555,462 - AO353_20795 0.81 +1.1
4,555,462 - AO353_20795 0.81 -2.8
4,555,462 - AO353_20795 0.81 -1.8
4,555,485 + AO353_20795 0.84 -2.2
4,555,485 + AO353_20795 0.84 -0.0
4,555,485 + AO353_20795 0.84 -0.2
4,555,485 + AO353_20795 0.84 -1.8
4,555,486 - AO353_20795 0.84 -2.8
4,555,486 - AO353_20795 0.84 -1.2
4,555,486 - AO353_20795 0.84 -1.2
4,555,486 - AO353_20795 0.84 -2.8
4,555,711 - AO353_20800 0.40 -1.2
4,555,807 + AO353_20800 0.74 -2.5
4,555,916 - -2.2
4,555,916 - -0.8
4,555,960 + -3.0
4,555,976 + -2.2
4,555,977 - -0.8
4,555,986 + -1.2
4,555,987 - -1.8
4,555,987 - -0.0
4,555,987 - +0.5
4,555,987 - -1.8
4,555,987 - -1.8
4,556,009 + -3.2
4,556,009 + -1.8
4,556,010 - -2.8
4,556,010 - -3.2
4,556,010 - -2.5
4,556,010 - -1.4
4,556,082 - -2.5
4,556,109 + -1.2
4,556,109 + -1.8
4,556,109 + -0.2
4,556,109 + -2.5
4,556,109 + -2.8
4,556,110 - +0.8
4,556,110 - +3.9
4,556,192 + AO353_20805 0.11 -2.5
4,556,192 + AO353_20805 0.11 -3.4
4,556,192 + AO353_20805 0.11 -1.2
4,556,192 + AO353_20805 0.11 -2.2
4,556,192 + AO353_20805 0.11 -2.8
4,556,192 + AO353_20805 0.11 -2.5
4,556,192 + AO353_20805 0.11 +0.8
4,556,192 + AO353_20805 0.11 -0.2
4,556,192 + AO353_20805 0.11 -3.5
4,556,192 + AO353_20805 0.11 -1.6
4,556,192 + AO353_20805 0.11 -2.5
4,556,192 + AO353_20805 0.11 -0.4
4,556,192 + AO353_20805 0.11 -1.2
4,556,192 + AO353_20805 0.11 -0.2
4,556,193 - AO353_20805 0.11 -0.0
4,556,193 - AO353_20805 0.11 -1.8
4,556,193 - AO353_20805 0.11 -1.8
4,556,193 - AO353_20805 0.11 -0.2
4,556,193 - AO353_20805 0.11 -0.2
4,556,193 - AO353_20805 0.11 +1.1
4,556,193 - AO353_20805 0.11 -0.2
4,556,193 - AO353_20805 0.11 +2.4
4,556,193 - AO353_20805 0.11 +0.5
4,556,193 - AO353_20805 0.11 -0.5
4,556,193 - AO353_20805 0.11 -2.5
4,556,193 - AO353_20805 0.11 +0.8
4,556,193 - AO353_20805 0.11 -1.8
4,556,193 - AO353_20805 0.11 -0.2
4,556,378 + AO353_20805 0.28 +1.1
4,556,378 + AO353_20805 0.28 -0.2
4,556,378 + AO353_20805 0.28 -1.2
4,556,378 + AO353_20805 0.28 -2.5
4,556,378 + AO353_20805 0.28 -1.2
4,556,378 + AO353_20805 0.28 -1.2
4,556,378 + AO353_20805 0.28 -0.2
4,556,378 + AO353_20805 0.28 -1.2
4,556,379 - AO353_20805 0.28 -1.8
4,556,379 - AO353_20805 0.28 -2.2
4,556,379 - AO353_20805 0.28 -2.8
4,556,379 - AO353_20805 0.28 -3.0
4,556,379 - AO353_20805 0.28 +0.6
4,556,379 - AO353_20805 0.28 +2.2
4,556,379 - AO353_20805 0.28 -1.2
4,556,379 - AO353_20805 0.28 +0.8
4,556,379 - AO353_20805 0.28 -0.2
4,556,379 - AO353_20805 0.28 -2.8
4,556,379 - AO353_20805 0.28 -2.2
4,556,379 - AO353_20805 0.28 -2.2
4,556,402 + AO353_20805 0.30 +1.4
4,556,403 - AO353_20805 0.30 +1.0
4,556,403 - AO353_20805 0.30 +1.4
4,556,403 - AO353_20805 0.30 +0.6
4,556,408 + AO353_20805 0.30 +3.6
4,556,408 + AO353_20805 0.30 -2.0
4,556,409 - AO353_20805 0.30 -1.2
4,556,409 - AO353_20805 0.30 +1.4
4,556,409 - AO353_20805 0.30 -2.5
4,556,409 - AO353_20805 0.30 -1.2
4,556,499 - AO353_20805 0.39 -1.2
4,556,646 + AO353_20805 0.52 -2.2
4,556,669 + AO353_20805 0.54 -1.8
4,556,669 + AO353_20805 0.54 -2.2
4,556,669 + AO353_20805 0.54 -1.2
4,556,768 + AO353_20805 0.63 +0.5
4,556,768 + AO353_20805 0.63 +0.6
4,556,768 + AO353_20805 0.63 -1.8
4,556,768 + AO353_20805 0.63 +2.1
4,556,769 - AO353_20805 0.64 +1.1
4,556,769 - AO353_20805 0.64 -0.2
4,556,802 + AO353_20805 0.67 -1.2
4,556,802 + AO353_20805 0.67 -3.0
4,556,802 + AO353_20805 0.67 +0.1
4,556,802 + AO353_20805 0.67 -1.2
4,556,802 + AO353_20805 0.67 -1.2
4,556,803 - AO353_20805 0.67 -0.6

Or see this region's nucleotide sequence