Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_18965 and AO353_18970 are separated by 109 nucleotides AO353_18970 and AO353_18975 are separated by 234 nucleotides
AO353_18965: AO353_18965 - chemotaxis protein, at 4,166,937 to 4,168,418
_18965
AO353_18970: AO353_18970 - hydrolase TatD, at 4,168,528 to 4,169,334
_18970
AO353_18975: AO353_18975 - glycosylase, at 4,169,569 to 4,170,990
_18975
Position (kb)
4168
4169
4170 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 4167.535 kb on - strand, within AO353_18965 at 4167.535 kb on - strand, within AO353_18965 at 4167.625 kb on + strand, within AO353_18965 at 4167.625 kb on + strand, within AO353_18965 at 4167.625 kb on + strand, within AO353_18965 at 4167.625 kb on + strand, within AO353_18965 at 4167.625 kb on + strand, within AO353_18965 at 4167.626 kb on - strand, within AO353_18965 at 4167.626 kb on - strand, within AO353_18965 at 4167.702 kb on + strand, within AO353_18965 at 4167.703 kb on - strand, within AO353_18965 at 4167.703 kb on - strand, within AO353_18965 at 4167.759 kb on - strand, within AO353_18965 at 4167.991 kb on + strand, within AO353_18965 at 4167.992 kb on - strand, within AO353_18965 at 4167.992 kb on - strand, within AO353_18965 at 4167.992 kb on - strand, within AO353_18965 at 4167.992 kb on - strand, within AO353_18965 at 4167.992 kb on - strand, within AO353_18965 at 4168.023 kb on + strand, within AO353_18965 at 4168.024 kb on - strand, within AO353_18965 at 4168.024 kb on - strand, within AO353_18965 at 4168.036 kb on + strand, within AO353_18965 at 4168.037 kb on - strand, within AO353_18965 at 4168.037 kb on - strand, within AO353_18965 at 4168.037 kb on - strand, within AO353_18965 at 4168.037 kb on - strand, within AO353_18965 at 4168.075 kb on - strand, within AO353_18965 at 4168.327 kb on + strand at 4168.327 kb on + strand at 4168.328 kb on - strand at 4168.328 kb on - strand at 4168.328 kb on - strand at 4168.328 kb on - strand at 4168.328 kb on - strand at 4168.384 kb on + strand at 4168.404 kb on - strand at 4168.447 kb on - strand at 4168.447 kb on - strand at 4168.520 kb on + strand at 4168.586 kb on - strand at 4168.643 kb on + strand, within AO353_18970 at 4168.643 kb on + strand, within AO353_18970 at 4168.644 kb on - strand, within AO353_18970 at 4168.644 kb on - strand, within AO353_18970 at 4168.644 kb on - strand, within AO353_18970 at 4168.644 kb on - strand, within AO353_18970 at 4168.644 kb on - strand, within AO353_18970 at 4168.700 kb on + strand, within AO353_18970 at 4168.700 kb on + strand, within AO353_18970 at 4168.827 kb on - strand, within AO353_18970 at 4168.827 kb on - strand, within AO353_18970 at 4168.827 kb on - strand, within AO353_18970 at 4168.879 kb on + strand, within AO353_18970 at 4168.879 kb on + strand, within AO353_18970 at 4169.256 kb on - strand at 4169.256 kb on - strand at 4169.256 kb on - strand at 4169.269 kb on + strand at 4169.345 kb on + strand at 4169.346 kb on - strand at 4169.346 kb on - strand at 4169.377 kb on + strand at 4169.383 kb on + strand at 4169.386 kb on - strand at 4169.386 kb on - strand at 4169.386 kb on - strand at 4169.402 kb on + strand at 4169.403 kb on - strand at 4169.412 kb on + strand at 4169.412 kb on + strand at 4169.413 kb on - strand at 4169.413 kb on - strand at 4169.413 kb on - strand at 4169.532 kb on + strand at 4169.532 kb on + strand at 4169.533 kb on - strand at 4169.550 kb on + strand at 4169.550 kb on + strand at 4169.550 kb on + strand at 4169.550 kb on + strand at 4169.550 kb on + strand at 4169.551 kb on - strand at 4169.551 kb on - strand at 4169.551 kb on - strand at 4169.591 kb on + strand at 4169.779 kb on + strand, within AO353_18975 at 4169.779 kb on + strand, within AO353_18975 at 4169.780 kb on - strand, within AO353_18975 at 4169.780 kb on - strand, within AO353_18975 at 4169.780 kb on - strand, within AO353_18975 at 4169.806 kb on + strand, within AO353_18975 at 4169.806 kb on + strand, within AO353_18975 at 4169.807 kb on - strand, within AO353_18975 at 4169.807 kb on - strand, within AO353_18975 at 4169.972 kb on + strand, within AO353_18975 at 4169.973 kb on - strand, within AO353_18975 at 4170.022 kb on + strand, within AO353_18975 at 4170.022 kb on + strand, within AO353_18975 at 4170.310 kb on + strand, within AO353_18975 at 4170.310 kb on + strand, within AO353_18975 at 4170.311 kb on - strand, within AO353_18975 at 4170.311 kb on - strand, within AO353_18975
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 4,167,535 - AO353_18965 0.40 -0.2 4,167,535 - AO353_18965 0.40 -0.2 4,167,625 + AO353_18965 0.46 -0.2 4,167,625 + AO353_18965 0.46 +0.8 4,167,625 + AO353_18965 0.46 -1.2 4,167,625 + AO353_18965 0.46 -0.2 4,167,625 + AO353_18965 0.46 -0.2 4,167,626 - AO353_18965 0.46 -2.5 4,167,626 - AO353_18965 0.46 -2.2 4,167,702 + AO353_18965 0.52 +0.1 4,167,703 - AO353_18965 0.52 +1.6 4,167,703 - AO353_18965 0.52 -1.5 4,167,759 - AO353_18965 0.55 -2.2 4,167,991 + AO353_18965 0.71 +0.2 4,167,992 - AO353_18965 0.71 -1.8 4,167,992 - AO353_18965 0.71 +0.9 4,167,992 - AO353_18965 0.71 -2.5 4,167,992 - AO353_18965 0.71 -1.2 4,167,992 - AO353_18965 0.71 +1.6 4,168,023 + AO353_18965 0.73 -0.8 4,168,024 - AO353_18965 0.73 +0.8 4,168,024 - AO353_18965 0.73 -1.2 4,168,036 + AO353_18965 0.74 -1.2 4,168,037 - AO353_18965 0.74 -1.8 4,168,037 - AO353_18965 0.74 -0.2 4,168,037 - AO353_18965 0.74 -0.2 4,168,037 - AO353_18965 0.74 -1.8 4,168,075 - AO353_18965 0.77 +0.6 4,168,327 + -2.5 4,168,327 + -0.2 4,168,328 - -1.2 4,168,328 - -1.8 4,168,328 - +0.1 4,168,328 - +0.5 4,168,328 - -1.8 4,168,384 + +0.1 4,168,404 - -1.5 4,168,447 - +2.1 4,168,447 - +2.8 4,168,520 + -0.3 4,168,586 - -0.2 4,168,643 + AO353_18970 0.14 -1.0 4,168,643 + AO353_18970 0.14 -1.8 4,168,644 - AO353_18970 0.14 -1.2 4,168,644 - AO353_18970 0.14 +0.2 4,168,644 - AO353_18970 0.14 -1.2 4,168,644 - AO353_18970 0.14 -0.7 4,168,644 - AO353_18970 0.14 -0.8 4,168,700 + AO353_18970 0.21 +2.6 4,168,700 + AO353_18970 0.21 +5.0 4,168,827 - AO353_18970 0.37 -0.4 4,168,827 - AO353_18970 0.37 -0.0 4,168,827 - AO353_18970 0.37 +1.4 4,168,879 + AO353_18970 0.43 -0.5 4,168,879 + AO353_18970 0.43 -2.8 4,169,256 - -0.2 4,169,256 - -1.2 4,169,256 - -2.5 4,169,269 + -1.0 4,169,345 + -0.2 4,169,346 - -2.5 4,169,346 - -1.8 4,169,377 + -0.2 4,169,383 + -0.2 4,169,386 - -1.2 4,169,386 - +0.8 4,169,386 - -2.8 4,169,402 + +0.5 4,169,403 - -0.4 4,169,412 + -1.2 4,169,412 + -1.2 4,169,413 - -0.2 4,169,413 - -2.2 4,169,413 - -1.8 4,169,532 + -0.2 4,169,532 + -2.5 4,169,533 - -0.9 4,169,550 + +1.1 4,169,550 + +1.4 4,169,550 + +1.6 4,169,550 + -1.2 4,169,550 + +2.4 4,169,551 - +1.4 4,169,551 - -1.2 4,169,551 - -1.2 4,169,591 + -2.2 4,169,779 + AO353_18975 0.15 +0.8 4,169,779 + AO353_18975 0.15 -1.2 4,169,780 - AO353_18975 0.15 +0.2 4,169,780 - AO353_18975 0.15 -2.2 4,169,780 - AO353_18975 0.15 +0.6 4,169,806 + AO353_18975 0.17 -0.2 4,169,806 + AO353_18975 0.17 -2.8 4,169,807 - AO353_18975 0.17 -1.8 4,169,807 - AO353_18975 0.17 -1.8 4,169,972 + AO353_18975 0.28 -0.2 4,169,973 - AO353_18975 0.28 +2.1 4,170,022 + AO353_18975 0.32 -0.2 4,170,022 + AO353_18975 0.32 -1.2 4,170,310 + AO353_18975 0.52 +1.1 4,170,310 + AO353_18975 0.52 -1.8 4,170,311 - AO353_18975 0.52 +1.4 4,170,311 - AO353_18975 0.52 -0.2
Or see this region's nucleotide sequence