Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_17985

Experiment: Cisplatin 0.006 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_17980 and AO353_17985 are separated by 125 nucleotidesAO353_17985 and AO353_17990 are separated by 141 nucleotides AO353_17980: AO353_17980 - siderophore synthetase, at 3,957,846 to 3,959,768 _17980 AO353_17985: AO353_17985 - LysR family transcriptional regulator, at 3,959,894 to 3,960,811 _17985 AO353_17990: AO353_17990 - MFS transporter, at 3,960,953 to 3,962,245 _17990 Position (kb) 3959 3960 3961Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3958.927 kb on + strand, within AO353_17980at 3958.927 kb on + strand, within AO353_17980at 3958.927 kb on + strand, within AO353_17980at 3958.928 kb on - strand, within AO353_17980at 3958.928 kb on - strand, within AO353_17980at 3958.928 kb on - strand, within AO353_17980at 3958.928 kb on - strand, within AO353_17980at 3958.928 kb on - strand, within AO353_17980at 3958.928 kb on - strand, within AO353_17980at 3958.928 kb on - strand, within AO353_17980at 3958.928 kb on - strand, within AO353_17980at 3959.149 kb on + strand, within AO353_17980at 3959.149 kb on + strand, within AO353_17980at 3959.149 kb on + strand, within AO353_17980at 3959.149 kb on + strand, within AO353_17980at 3959.149 kb on + strand, within AO353_17980at 3959.149 kb on + strand, within AO353_17980at 3959.149 kb on + strand, within AO353_17980at 3959.149 kb on + strand, within AO353_17980at 3959.150 kb on - strand, within AO353_17980at 3959.150 kb on - strand, within AO353_17980at 3959.150 kb on - strand, within AO353_17980at 3959.150 kb on - strand, within AO353_17980at 3959.150 kb on - strand, within AO353_17980at 3959.150 kb on - strand, within AO353_17980at 3959.150 kb on - strand, within AO353_17980at 3959.150 kb on - strand, within AO353_17980at 3959.329 kb on + strand, within AO353_17980at 3959.329 kb on + strand, within AO353_17980at 3959.329 kb on + strand, within AO353_17980at 3959.329 kb on + strand, within AO353_17980at 3959.330 kb on - strand, within AO353_17980at 3959.330 kb on - strand, within AO353_17980at 3959.330 kb on - strand, within AO353_17980at 3959.330 kb on - strand, within AO353_17980at 3959.365 kb on - strand, within AO353_17980at 3959.365 kb on - strand, within AO353_17980at 3959.365 kb on - strand, within AO353_17980at 3959.573 kb on - strand, within AO353_17980at 3959.573 kb on - strand, within AO353_17980at 3959.758 kb on + strandat 3959.797 kb on + strandat 3959.797 kb on + strandat 3959.798 kb on - strandat 3959.798 kb on - strandat 3959.879 kb on + strandat 3959.895 kb on + strandat 3959.895 kb on + strandat 3959.895 kb on + strandat 3959.896 kb on - strandat 3959.916 kb on + strandat 3959.916 kb on + strandat 3959.916 kb on + strandat 3959.916 kb on + strandat 3959.916 kb on + strandat 3959.916 kb on + strandat 3959.916 kb on + strandat 3959.916 kb on + strandat 3959.916 kb on + strandat 3959.916 kb on + strandat 3959.916 kb on + strandat 3959.916 kb on + strandat 3959.916 kb on + strandat 3959.917 kb on - strandat 3959.917 kb on - strandat 3959.917 kb on - strandat 3959.917 kb on - strandat 3959.917 kb on - strandat 3959.917 kb on - strandat 3959.917 kb on - strandat 3959.917 kb on - strandat 3959.917 kb on - strandat 3959.917 kb on - strandat 3959.917 kb on - strandat 3960.179 kb on + strand, within AO353_17985at 3960.179 kb on + strand, within AO353_17985at 3960.180 kb on - strand, within AO353_17985at 3960.237 kb on + strand, within AO353_17985at 3960.279 kb on + strand, within AO353_17985at 3960.279 kb on + strand, within AO353_17985at 3960.279 kb on + strand, within AO353_17985at 3960.280 kb on - strand, within AO353_17985at 3960.280 kb on - strand, within AO353_17985at 3960.280 kb on - strand, within AO353_17985at 3960.280 kb on - strand, within AO353_17985at 3960.280 kb on - strand, within AO353_17985at 3960.291 kb on + strand, within AO353_17985at 3960.291 kb on + strand, within AO353_17985at 3960.291 kb on + strand, within AO353_17985at 3960.292 kb on - strand, within AO353_17985at 3960.292 kb on - strand, within AO353_17985at 3960.433 kb on + strand, within AO353_17985at 3960.455 kb on + strand, within AO353_17985at 3960.456 kb on - strand, within AO353_17985at 3960.456 kb on - strand, within AO353_17985at 3960.456 kb on - strand, within AO353_17985at 3960.465 kb on + strand, within AO353_17985at 3960.828 kb on + strandat 3960.829 kb on - strandat 3960.829 kb on - strandat 3960.847 kb on + strandat 3960.847 kb on + strandat 3960.847 kb on + strandat 3960.848 kb on - strandat 3960.848 kb on - strandat 3960.848 kb on - strandat 3960.850 kb on + strandat 3960.850 kb on + strandat 3960.850 kb on + strandat 3960.851 kb on - strandat 3960.851 kb on - strandat 3960.851 kb on - strandat 3960.851 kb on - strandat 3960.924 kb on + strandat 3960.924 kb on + strandat 3960.924 kb on + strandat 3960.924 kb on + strandat 3960.924 kb on + strandat 3960.924 kb on + strandat 3960.924 kb on + strandat 3960.924 kb on + strandat 3960.924 kb on + strandat 3960.925 kb on - strandat 3960.925 kb on - strandat 3960.925 kb on - strandat 3961.313 kb on + strand, within AO353_17990at 3961.650 kb on - strand, within AO353_17990at 3961.727 kb on + strand, within AO353_17990at 3961.727 kb on + strand, within AO353_17990at 3961.728 kb on - strand, within AO353_17990at 3961.728 kb on - strand, within AO353_17990at 3961.783 kb on - strand, within AO353_17990at 3961.783 kb on - strand, within AO353_17990at 3961.783 kb on - strand, within AO353_17990at 3961.783 kb on - strand, within AO353_17990at 3961.783 kb on - strand, within AO353_17990at 3961.783 kb on - strand, within AO353_17990

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
remove
3,958,927 + AO353_17980 0.56 +0.7
3,958,927 + AO353_17980 0.56 +2.2
3,958,927 + AO353_17980 0.56 +2.4
3,958,928 - AO353_17980 0.56 -1.7
3,958,928 - AO353_17980 0.56 +2.0
3,958,928 - AO353_17980 0.56 +0.9
3,958,928 - AO353_17980 0.56 -3.1
3,958,928 - AO353_17980 0.56 -1.1
3,958,928 - AO353_17980 0.56 -2.4
3,958,928 - AO353_17980 0.56 -1.7
3,958,928 - AO353_17980 0.56 -1.1
3,959,149 + AO353_17980 0.68 -1.7
3,959,149 + AO353_17980 0.68 +0.9
3,959,149 + AO353_17980 0.68 -1.1
3,959,149 + AO353_17980 0.68 -1.1
3,959,149 + AO353_17980 0.68 -0.1
3,959,149 + AO353_17980 0.68 -1.7
3,959,149 + AO353_17980 0.68 +3.7
3,959,149 + AO353_17980 0.68 +3.3
3,959,150 - AO353_17980 0.68 +0.7
3,959,150 - AO353_17980 0.68 -1.1
3,959,150 - AO353_17980 0.68 -1.7
3,959,150 - AO353_17980 0.68 -1.1
3,959,150 - AO353_17980 0.68 -1.9
3,959,150 - AO353_17980 0.68 -2.7
3,959,150 - AO353_17980 0.68 -1.1
3,959,150 - AO353_17980 0.68 -0.4
3,959,329 + AO353_17980 0.77 +3.2
3,959,329 + AO353_17980 0.77 +5.3
3,959,329 + AO353_17980 0.77 -0.6
3,959,329 + AO353_17980 0.77 -1.7
3,959,330 - AO353_17980 0.77 -3.1
3,959,330 - AO353_17980 0.77 +2.6
3,959,330 - AO353_17980 0.77 -1.7
3,959,330 - AO353_17980 0.77 -1.4
3,959,365 - AO353_17980 0.79 -0.1
3,959,365 - AO353_17980 0.79 +2.2
3,959,365 - AO353_17980 0.79 +0.6
3,959,573 - AO353_17980 0.90 +2.2
3,959,573 - AO353_17980 0.90 -1.1
3,959,758 + +0.5
3,959,797 + -1.7
3,959,797 + -1.1
3,959,798 - -1.7
3,959,798 - -2.1
3,959,879 + +0.9
3,959,895 + -1.7
3,959,895 + -0.8
3,959,895 + -2.1
3,959,896 - +1.9
3,959,916 + -2.1
3,959,916 + -0.1
3,959,916 + -2.1
3,959,916 + -3.1
3,959,916 + -1.1
3,959,916 + -0.1
3,959,916 + -0.4
3,959,916 + -0.5
3,959,916 + -0.1
3,959,916 + -1.7
3,959,916 + -1.1
3,959,916 + +1.5
3,959,916 + -2.4
3,959,917 - +0.3
3,959,917 - -1.1
3,959,917 - -2.4
3,959,917 - -3.4
3,959,917 - -1.7
3,959,917 - -0.1
3,959,917 - +0.7
3,959,917 - +0.9
3,959,917 - +1.1
3,959,917 - -1.1
3,959,917 - -1.7
3,960,179 + AO353_17985 0.31 -0.7
3,960,179 + AO353_17985 0.31 -2.4
3,960,180 - AO353_17985 0.31 -0.1
3,960,237 + AO353_17985 0.37 -0.7
3,960,279 + AO353_17985 0.42 +0.9
3,960,279 + AO353_17985 0.42 +2.4
3,960,279 + AO353_17985 0.42 -1.7
3,960,280 - AO353_17985 0.42 +3.4
3,960,280 - AO353_17985 0.42 +0.5
3,960,280 - AO353_17985 0.42 +2.5
3,960,280 - AO353_17985 0.42 +1.2
3,960,280 - AO353_17985 0.42 +2.0
3,960,291 + AO353_17985 0.43 -2.1
3,960,291 + AO353_17985 0.43 -1.1
3,960,291 + AO353_17985 0.43 -1.1
3,960,292 - AO353_17985 0.43 -1.7
3,960,292 - AO353_17985 0.43 -0.4
3,960,433 + AO353_17985 0.59 +0.9
3,960,455 + AO353_17985 0.61 -0.8
3,960,456 - AO353_17985 0.61 +0.5
3,960,456 - AO353_17985 0.61 -1.7
3,960,456 - AO353_17985 0.61 -2.1
3,960,465 + AO353_17985 0.62 -1.7
3,960,828 + +0.7
3,960,829 - +0.9
3,960,829 - +0.0
3,960,847 + +0.5
3,960,847 + -2.1
3,960,847 + +1.3
3,960,848 - -0.1
3,960,848 - -0.1
3,960,848 - -1.1
3,960,850 + -0.1
3,960,850 + -0.4
3,960,850 + +1.6
3,960,851 - -1.8
3,960,851 - -0.1
3,960,851 - +2.5
3,960,851 - -1.1
3,960,924 + +1.8
3,960,924 + -2.3
3,960,924 + -1.7
3,960,924 + -2.1
3,960,924 + -0.1
3,960,924 + +0.5
3,960,924 + +2.6
3,960,924 + +0.1
3,960,924 + -1.1
3,960,925 - -1.7
3,960,925 - -2.1
3,960,925 - -1.1
3,961,313 + AO353_17990 0.28 -2.7
3,961,650 - AO353_17990 0.54 +0.6
3,961,727 + AO353_17990 0.60 +1.2
3,961,727 + AO353_17990 0.60 +0.4
3,961,728 - AO353_17990 0.60 -0.1
3,961,728 - AO353_17990 0.60 +1.3
3,961,783 - AO353_17990 0.64 -1.1
3,961,783 - AO353_17990 0.64 +0.1
3,961,783 - AO353_17990 0.64 -1.1
3,961,783 - AO353_17990 0.64 -0.1
3,961,783 - AO353_17990 0.64 -0.7
3,961,783 - AO353_17990 0.64 -1.7

Or see this region's nucleotide sequence