Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_17560

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_17555 and AO353_17560 are separated by 131 nucleotidesAO353_17560 and AO353_17565 are separated by 173 nucleotides AO353_17555: AO353_17555 - enoyl-CoA hydratase, at 3,870,365 to 3,871,477 _17555 AO353_17560: AO353_17560 - uracil-DNA glycosylase, at 3,871,609 to 3,872,301 _17560 AO353_17565: AO353_17565 - hypothetical protein, at 3,872,475 to 3,873,512 _17565 Position (kb) 3871 3872 3873Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3870.722 kb on + strand, within AO353_17555at 3870.722 kb on + strand, within AO353_17555at 3870.722 kb on + strand, within AO353_17555at 3870.722 kb on + strand, within AO353_17555at 3870.722 kb on + strand, within AO353_17555at 3870.722 kb on + strand, within AO353_17555at 3870.722 kb on + strand, within AO353_17555at 3870.722 kb on + strandat 3870.723 kb on - strand, within AO353_17555at 3870.723 kb on - strand, within AO353_17555at 3870.723 kb on - strand, within AO353_17555at 3870.723 kb on - strand, within AO353_17555at 3870.723 kb on - strand, within AO353_17555at 3870.723 kb on - strand, within AO353_17555at 3870.723 kb on - strand, within AO353_17555at 3870.880 kb on + strand, within AO353_17555at 3870.880 kb on + strand, within AO353_17555at 3870.881 kb on - strand, within AO353_17555at 3871.132 kb on - strand, within AO353_17555at 3871.159 kb on + strand, within AO353_17555at 3871.159 kb on + strand, within AO353_17555at 3871.160 kb on - strand, within AO353_17555at 3871.165 kb on - strand, within AO353_17555at 3871.165 kb on - strand, within AO353_17555at 3871.246 kb on + strand, within AO353_17555at 3871.247 kb on - strand, within AO353_17555at 3871.247 kb on - strand, within AO353_17555at 3871.509 kb on + strandat 3871.509 kb on + strandat 3871.509 kb on + strandat 3871.510 kb on - strandat 3871.510 kb on - strandat 3871.520 kb on + strandat 3871.604 kb on + strandat 3871.605 kb on - strandat 3871.605 kb on - strandat 3871.626 kb on + strandat 3871.627 kb on - strandat 3871.681 kb on + strand, within AO353_17560at 3871.681 kb on + strand, within AO353_17560at 3871.681 kb on + strand, within AO353_17560at 3871.681 kb on + strand, within AO353_17560at 3871.681 kb on + strand, within AO353_17560at 3871.681 kb on + strand, within AO353_17560at 3871.681 kb on + strand, within AO353_17560at 3871.681 kb on + strand, within AO353_17560at 3871.681 kb on + strand, within AO353_17560at 3871.681 kb on + strand, within AO353_17560at 3871.681 kb on + strand, within AO353_17560at 3871.681 kb on + strand, within AO353_17560at 3871.681 kb on + strand, within AO353_17560at 3871.682 kb on - strand, within AO353_17560at 3871.682 kb on - strand, within AO353_17560at 3871.682 kb on - strand, within AO353_17560at 3871.682 kb on - strand, within AO353_17560at 3871.682 kb on - strand, within AO353_17560at 3871.682 kb on - strand, within AO353_17560at 3871.682 kb on - strand, within AO353_17560at 3871.682 kb on - strand, within AO353_17560at 3871.682 kb on - strand, within AO353_17560at 3871.682 kb on - strand, within AO353_17560at 3871.682 kb on - strand, within AO353_17560at 3871.682 kb on - strand, within AO353_17560at 3871.682 kb on - strand, within AO353_17560at 3871.682 kb on - strand, within AO353_17560at 3871.682 kb on - strand, within AO353_17560at 3871.682 kb on - strand, within AO353_17560at 3871.682 kb on - strand, within AO353_17560at 3871.682 kb on - strand, within AO353_17560at 3871.682 kb on - strand, within AO353_17560at 3871.682 kb on - strand, within AO353_17560at 3871.682 kb on - strand, within AO353_17560at 3871.682 kb on - strand, within AO353_17560at 3871.682 kb on - strand, within AO353_17560at 3871.682 kb on - strand, within AO353_17560at 3871.738 kb on + strand, within AO353_17560at 3871.903 kb on + strand, within AO353_17560at 3871.903 kb on + strand, within AO353_17560at 3871.903 kb on + strand, within AO353_17560at 3871.903 kb on + strand, within AO353_17560at 3871.903 kb on + strand, within AO353_17560at 3871.903 kb on + strand, within AO353_17560at 3871.903 kb on + strand, within AO353_17560at 3871.903 kb on + strand, within AO353_17560at 3871.903 kb on + strand, within AO353_17560at 3871.903 kb on + strand, within AO353_17560at 3871.903 kb on + strand, within AO353_17560at 3871.903 kb on + strand, within AO353_17560at 3871.903 kb on + strand, within AO353_17560at 3871.904 kb on - strand, within AO353_17560at 3871.904 kb on - strand, within AO353_17560at 3871.904 kb on - strand, within AO353_17560at 3871.904 kb on - strand, within AO353_17560at 3871.904 kb on - strand, within AO353_17560at 3871.904 kb on - strand, within AO353_17560at 3871.904 kb on - strand, within AO353_17560at 3871.904 kb on - strand, within AO353_17560at 3871.904 kb on - strand, within AO353_17560at 3871.904 kb on - strand, within AO353_17560at 3871.904 kb on - strand, within AO353_17560at 3871.904 kb on - strand, within AO353_17560at 3871.904 kb on - strand, within AO353_17560at 3871.904 kb on - strand, within AO353_17560at 3871.905 kb on + strand, within AO353_17560at 3871.905 kb on + strand, within AO353_17560at 3871.906 kb on - strand, within AO353_17560at 3871.906 kb on - strand, within AO353_17560at 3871.906 kb on - strand, within AO353_17560at 3871.906 kb on - strand, within AO353_17560at 3871.906 kb on - strand, within AO353_17560at 3871.952 kb on - strand, within AO353_17560at 3872.056 kb on - strand, within AO353_17560at 3872.248 kb on + strandat 3872.248 kb on + strandat 3872.248 kb on + strandat 3872.248 kb on + strandat 3872.249 kb on - strandat 3872.249 kb on - strandat 3872.249 kb on - strandat 3872.249 kb on - strandat 3872.414 kb on + strandat 3872.414 kb on + strandat 3872.414 kb on + strandat 3872.414 kb on + strandat 3872.414 kb on + strandat 3872.414 kb on + strandat 3872.414 kb on + strandat 3872.414 kb on + strandat 3872.414 kb on + strandat 3872.414 kb on + strandat 3872.414 kb on + strandat 3872.415 kb on - strandat 3872.415 kb on - strandat 3872.415 kb on - strandat 3872.415 kb on - strandat 3872.415 kb on - strandat 3872.415 kb on - strandat 3872.415 kb on - strandat 3872.415 kb on - strandat 3872.415 kb on - strandat 3872.415 kb on - strandat 3872.415 kb on - strandat 3872.415 kb on - strandat 3872.415 kb on - strandat 3872.415 kb on - strandat 3872.422 kb on - strandat 3872.422 kb on - strandat 3872.422 kb on - strandat 3872.430 kb on + strandat 3872.504 kb on - strandat 3872.504 kb on - strandat 3872.847 kb on + strand, within AO353_17565at 3872.847 kb on + strand, within AO353_17565at 3872.847 kb on + strand, within AO353_17565at 3872.848 kb on - strand, within AO353_17565at 3872.848 kb on - strand, within AO353_17565at 3872.848 kb on - strand, within AO353_17565at 3872.848 kb on - strand, within AO353_17565at 3872.848 kb on - strand, within AO353_17565at 3873.025 kb on + strandat 3873.025 kb on + strand, within AO353_17565at 3873.025 kb on + strand, within AO353_17565at 3873.025 kb on + strand, within AO353_17565at 3873.025 kb on + strand, within AO353_17565at 3873.025 kb on + strand, within AO353_17565at 3873.026 kb on - strand, within AO353_17565at 3873.026 kb on - strand, within AO353_17565at 3873.026 kb on - strand, within AO353_17565at 3873.026 kb on - strand, within AO353_17565at 3873.026 kb on - strand, within AO353_17565at 3873.026 kb on - strand, within AO353_17565at 3873.026 kb on - strand, within AO353_17565at 3873.026 kb on - strand, within AO353_17565

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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3,870,722 + AO353_17555 0.32 -0.0
3,870,722 + AO353_17555 0.32 -2.0
3,870,722 + AO353_17555 0.32 -1.0
3,870,722 + AO353_17555 0.32 -2.9
3,870,722 + AO353_17555 0.32 +0.5
3,870,722 + AO353_17555 0.32 +3.1
3,870,722 + AO353_17555 0.32 +2.3
3,870,722 + -0.0
3,870,723 - AO353_17555 0.32 -1.6
3,870,723 - AO353_17555 0.32 +1.3
3,870,723 - AO353_17555 0.32 -1.6
3,870,723 - AO353_17555 0.32 +1.5
3,870,723 - AO353_17555 0.32 +3.0
3,870,723 - AO353_17555 0.32 -0.0
3,870,723 - AO353_17555 0.32 +1.0
3,870,880 + AO353_17555 0.46 -1.6
3,870,880 + AO353_17555 0.46 +2.1
3,870,881 - AO353_17555 0.46 -0.0
3,871,132 - AO353_17555 0.69 -1.0
3,871,159 + AO353_17555 0.71 -2.9
3,871,159 + AO353_17555 0.71 -0.3
3,871,160 - AO353_17555 0.71 +1.7
3,871,165 - AO353_17555 0.72 +1.0
3,871,165 - AO353_17555 0.72 +2.3
3,871,246 + AO353_17555 0.79 -1.6
3,871,247 - AO353_17555 0.79 -1.0
3,871,247 - AO353_17555 0.79 -0.4
3,871,509 + +2.0
3,871,509 + -3.4
3,871,509 + -1.6
3,871,510 - -3.2
3,871,510 - -1.0
3,871,520 + +1.0
3,871,604 + +1.5
3,871,605 - -1.0
3,871,605 - -0.9
3,871,626 + -2.4
3,871,627 - -1.3
3,871,681 + AO353_17560 0.10 -2.0
3,871,681 + AO353_17560 0.10 +0.1
3,871,681 + AO353_17560 0.10 -1.0
3,871,681 + AO353_17560 0.10 -1.0
3,871,681 + AO353_17560 0.10 -2.6
3,871,681 + AO353_17560 0.10 -0.0
3,871,681 + AO353_17560 0.10 -1.5
3,871,681 + AO353_17560 0.10 -2.0
3,871,681 + AO353_17560 0.10 +1.0
3,871,681 + AO353_17560 0.10 -0.0
3,871,681 + AO353_17560 0.10 -2.4
3,871,681 + AO353_17560 0.10 -2.0
3,871,681 + AO353_17560 0.10 -0.0
3,871,682 - AO353_17560 0.11 -1.6
3,871,682 - AO353_17560 0.11 +0.7
3,871,682 - AO353_17560 0.11 -2.6
3,871,682 - AO353_17560 0.11 -0.0
3,871,682 - AO353_17560 0.11 -1.9
3,871,682 - AO353_17560 0.11 -2.0
3,871,682 - AO353_17560 0.11 -1.6
3,871,682 - AO353_17560 0.11 -3.0
3,871,682 - AO353_17560 0.11 -1.0
3,871,682 - AO353_17560 0.11 -1.0
3,871,682 - AO353_17560 0.11 +2.3
3,871,682 - AO353_17560 0.11 -1.0
3,871,682 - AO353_17560 0.11 -2.0
3,871,682 - AO353_17560 0.11 -0.0
3,871,682 - AO353_17560 0.11 -3.2
3,871,682 - AO353_17560 0.11 -0.0
3,871,682 - AO353_17560 0.11 -2.0
3,871,682 - AO353_17560 0.11 +1.1
3,871,682 - AO353_17560 0.11 -0.0
3,871,682 - AO353_17560 0.11 +1.0
3,871,682 - AO353_17560 0.11 -1.0
3,871,682 - AO353_17560 0.11 +1.5
3,871,682 - AO353_17560 0.11 -2.4
3,871,682 - AO353_17560 0.11 -1.0
3,871,738 + AO353_17560 0.19 -3.2
3,871,903 + AO353_17560 0.42 +0.4
3,871,903 + AO353_17560 0.42 -2.9
3,871,903 + AO353_17560 0.42 -1.6
3,871,903 + AO353_17560 0.42 +0.5
3,871,903 + AO353_17560 0.42 +1.2
3,871,903 + AO353_17560 0.42 -0.0
3,871,903 + AO353_17560 0.42 -2.0
3,871,903 + AO353_17560 0.42 +1.4
3,871,903 + AO353_17560 0.42 -2.6
3,871,903 + AO353_17560 0.42 +1.5
3,871,903 + AO353_17560 0.42 -3.0
3,871,903 + AO353_17560 0.42 -0.0
3,871,903 + AO353_17560 0.42 -1.0
3,871,904 - AO353_17560 0.43 +0.7
3,871,904 - AO353_17560 0.43 -1.0
3,871,904 - AO353_17560 0.43 +0.7
3,871,904 - AO353_17560 0.43 +1.4
3,871,904 - AO353_17560 0.43 -1.6
3,871,904 - AO353_17560 0.43 -1.6
3,871,904 - AO353_17560 0.43 +1.3
3,871,904 - AO353_17560 0.43 -2.0
3,871,904 - AO353_17560 0.43 -1.0
3,871,904 - AO353_17560 0.43 +1.0
3,871,904 - AO353_17560 0.43 -0.0
3,871,904 - AO353_17560 0.43 -1.0
3,871,904 - AO353_17560 0.43 +2.0
3,871,904 - AO353_17560 0.43 -1.6
3,871,905 + AO353_17560 0.43 -2.4
3,871,905 + AO353_17560 0.43 -1.6
3,871,906 - AO353_17560 0.43 -0.0
3,871,906 - AO353_17560 0.43 -2.0
3,871,906 - AO353_17560 0.43 -0.0
3,871,906 - AO353_17560 0.43 +1.8
3,871,906 - AO353_17560 0.43 -0.9
3,871,952 - AO353_17560 0.49 -1.6
3,872,056 - AO353_17560 0.65 -1.4
3,872,248 + -1.6
3,872,248 + -2.0
3,872,248 + -0.6
3,872,248 + -1.0
3,872,249 - +2.8
3,872,249 - +3.3
3,872,249 - -0.0
3,872,249 - +1.5
3,872,414 + -1.0
3,872,414 + +2.8
3,872,414 + -1.0
3,872,414 + -2.0
3,872,414 + +1.6
3,872,414 + +1.8
3,872,414 + +0.5
3,872,414 + -0.0
3,872,414 + -2.6
3,872,414 + -2.4
3,872,414 + -0.6
3,872,415 - -1.6
3,872,415 - +2.4
3,872,415 - -0.8
3,872,415 - -2.0
3,872,415 - -0.0
3,872,415 - -2.9
3,872,415 - -1.6
3,872,415 - -1.6
3,872,415 - -0.6
3,872,415 - +1.4
3,872,415 - +1.3
3,872,415 - -2.4
3,872,415 - -0.3
3,872,415 - -1.0
3,872,422 - -1.0
3,872,422 - -0.0
3,872,422 - +1.3
3,872,430 + +3.3
3,872,504 - +1.1
3,872,504 - -2.6
3,872,847 + AO353_17565 0.36 +2.5
3,872,847 + AO353_17565 0.36 -2.4
3,872,847 + AO353_17565 0.36 +3.7
3,872,848 - AO353_17565 0.36 -1.0
3,872,848 - AO353_17565 0.36 -1.0
3,872,848 - AO353_17565 0.36 -0.0
3,872,848 - AO353_17565 0.36 +2.0
3,872,848 - AO353_17565 0.36 +2.0
3,873,025 + -0.0
3,873,025 + AO353_17565 0.53 -2.4
3,873,025 + AO353_17565 0.53 -2.0
3,873,025 + AO353_17565 0.53 -0.0
3,873,025 + AO353_17565 0.53 -1.4
3,873,025 + AO353_17565 0.53 -2.6
3,873,026 - AO353_17565 0.53 -0.0
3,873,026 - AO353_17565 0.53 -1.6
3,873,026 - AO353_17565 0.53 -0.0
3,873,026 - AO353_17565 0.53 -1.0
3,873,026 - AO353_17565 0.53 -1.4
3,873,026 - AO353_17565 0.53 -0.0
3,873,026 - AO353_17565 0.53 +0.5
3,873,026 - AO353_17565 0.53 -0.0

Or see this region's nucleotide sequence