Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_14925 and AO353_14930 are separated by 106 nucleotides AO353_14930 and AO353_14935 are separated by 178 nucleotides AO353_14935 and AO353_14940 are separated by 69 nucleotides
AO353_14925: AO353_14925 - hydroxyproline-2-epimerase, at 3,300,760 to 3,301,695
_14925
AO353_14930: AO353_14930 - GntR family transcriptional regulator, at 3,301,802 to 3,302,482
_14930
AO353_14935: AO353_14935 - aminopeptidase, at 3,302,661 to 3,302,948
_14935
AO353_14940: AO353_14940 - malate:quinone oxidoreductase, at 3,303,018 to 3,304,526
_14940
Position (kb)
3302
3303 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3301.686 kb on + strand at 3301.686 kb on + strand at 3301.686 kb on + strand at 3301.687 kb on - strand at 3301.687 kb on - strand at 3301.687 kb on - strand at 3301.687 kb on - strand at 3301.687 kb on - strand at 3301.727 kb on + strand at 3301.727 kb on + strand at 3301.727 kb on + strand at 3301.727 kb on + strand at 3301.727 kb on + strand at 3301.728 kb on - strand at 3301.728 kb on - strand at 3301.728 kb on - strand at 3301.768 kb on + strand at 3301.768 kb on + strand at 3301.769 kb on - strand at 3301.836 kb on + strand at 3301.836 kb on + strand at 3301.837 kb on - strand at 3301.837 kb on - strand at 3301.837 kb on - strand at 3301.983 kb on + strand, within AO353_14930 at 3301.984 kb on - strand, within AO353_14930 at 3301.984 kb on - strand, within AO353_14930 at 3302.049 kb on + strand, within AO353_14930 at 3302.049 kb on + strand, within AO353_14930 at 3302.049 kb on + strand, within AO353_14930 at 3302.049 kb on + strand, within AO353_14930 at 3302.050 kb on - strand, within AO353_14930 at 3302.515 kb on - strand at 3302.519 kb on + strand at 3302.519 kb on + strand at 3302.519 kb on + strand at 3302.519 kb on + strand at 3302.519 kb on + strand at 3302.519 kb on + strand at 3302.519 kb on + strand at 3302.519 kb on + strand at 3302.519 kb on + strand at 3302.520 kb on - strand at 3302.520 kb on - strand at 3302.520 kb on - strand at 3302.521 kb on + strand at 3302.666 kb on + strand at 3302.666 kb on + strand at 3302.666 kb on + strand at 3302.666 kb on + strand at 3302.666 kb on + strand at 3302.667 kb on - strand at 3302.672 kb on + strand at 3302.672 kb on + strand at 3302.672 kb on + strand at 3302.672 kb on + strand at 3302.672 kb on + strand at 3302.672 kb on + strand at 3302.672 kb on + strand at 3302.672 kb on + strand at 3302.673 kb on - strand at 3302.903 kb on + strand, within AO353_14935 at 3302.903 kb on + strand, within AO353_14935 at 3302.904 kb on - strand, within AO353_14935 at 3302.904 kb on - strand, within AO353_14935 at 3302.904 kb on - strand, within AO353_14935 at 3302.904 kb on - strand, within AO353_14935 at 3302.904 kb on - strand, within AO353_14935 at 3302.904 kb on - strand, within AO353_14935 at 3302.916 kb on + strand, within AO353_14935 at 3302.917 kb on - strand, within AO353_14935 at 3302.917 kb on - strand, within AO353_14935 at 3302.947 kb on - strand at 3303.006 kb on + strand at 3303.391 kb on + strand, within AO353_14940 at 3303.391 kb on + strand, within AO353_14940 at 3303.391 kb on + strand, within AO353_14940 at 3303.392 kb on - strand, within AO353_14940 at 3303.392 kb on - strand, within AO353_14940 at 3303.451 kb on + strand, within AO353_14940 at 3303.668 kb on - strand, within AO353_14940 at 3303.916 kb on + strand, within AO353_14940 at 3303.917 kb on - strand, within AO353_14940
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 3,301,686 + +1.9 3,301,686 + -2.1 3,301,686 + +0.2 3,301,687 - +1.4 3,301,687 - +0.2 3,301,687 - -2.1 3,301,687 - +2.4 3,301,687 - -2.1 3,301,727 + -1.4 3,301,727 + -1.4 3,301,727 + +1.1 3,301,727 + -2.1 3,301,727 + +0.2 3,301,728 - +0.8 3,301,728 - +0.2 3,301,728 - +0.2 3,301,768 + -1.0 3,301,768 + +0.2 3,301,769 - +0.4 3,301,836 + -0.8 3,301,836 + -0.8 3,301,837 - +0.9 3,301,837 - +0.2 3,301,837 - -1.4 3,301,983 + AO353_14930 0.27 +2.5 3,301,984 - AO353_14930 0.27 +0.8 3,301,984 - AO353_14930 0.27 -2.4 3,302,049 + AO353_14930 0.36 -0.8 3,302,049 + AO353_14930 0.36 +0.2 3,302,049 + AO353_14930 0.36 -2.4 3,302,049 + AO353_14930 0.36 +2.4 3,302,050 - AO353_14930 0.36 +1.4 3,302,515 - -0.8 3,302,519 + -0.8 3,302,519 + -1.4 3,302,519 + -1.8 3,302,519 + +0.6 3,302,519 + +1.2 3,302,519 + -0.8 3,302,519 + -1.4 3,302,519 + +0.2 3,302,519 + +0.5 3,302,520 - -1.8 3,302,520 - +1.9 3,302,520 - -2.4 3,302,521 + +1.6 3,302,666 + +1.8 3,302,666 + -0.6 3,302,666 + +0.2 3,302,666 + +0.9 3,302,666 + -1.8 3,302,667 - -0.2 3,302,672 + -0.8 3,302,672 + +0.2 3,302,672 + +0.4 3,302,672 + -2.6 3,302,672 + -1.8 3,302,672 + +1.8 3,302,672 + -1.2 3,302,672 + +3.3 3,302,673 - -0.4 3,302,903 + AO353_14935 0.84 -2.4 3,302,903 + AO353_14935 0.84 -1.8 3,302,904 - AO353_14935 0.84 -3.3 3,302,904 - AO353_14935 0.84 -0.8 3,302,904 - AO353_14935 0.84 -2.1 3,302,904 - AO353_14935 0.84 -2.4 3,302,904 - AO353_14935 0.84 -3.1 3,302,904 - AO353_14935 0.84 -0.8 3,302,916 + AO353_14935 0.89 +1.2 3,302,917 - AO353_14935 0.89 -0.1 3,302,917 - AO353_14935 0.89 -1.1 3,302,947 - -1.8 3,303,006 + -2.6 3,303,391 + AO353_14940 0.25 -0.8 3,303,391 + AO353_14940 0.25 +2.5 3,303,391 + AO353_14940 0.25 +0.2 3,303,392 - AO353_14940 0.25 +1.4 3,303,392 - AO353_14940 0.25 -0.8 3,303,451 + AO353_14940 0.29 -1.8 3,303,668 - AO353_14940 0.43 +1.9 3,303,916 + AO353_14940 0.60 +2.5 3,303,917 - AO353_14940 0.60 +0.4
Or see this region's nucleotide sequence