Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_14215 and AO353_14220 are separated by 152 nucleotides AO353_14220 and AO353_14225 overlap by 4 nucleotides AO353_14225 and AO353_14230 are separated by 129 nucleotides
AO353_14215: AO353_14215 - DNA transporter, at 3,156,408 to 3,157,424
_14215
AO353_14220: AO353_14220 - ribosomal large subunit pseudouridine synthase D, at 3,157,577 to 3,158,539
_14220
AO353_14225: AO353_14225 - laccase, at 3,158,536 to 3,159,261
_14225
AO353_14230: AO353_14230 - ATP-dependent chaperone ClpB, at 3,159,391 to 3,161,955
_14230
Position (kb)
3157
3158
3159 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3157.441 kb on - strand at 3157.441 kb on - strand at 3157.476 kb on - strand at 3157.476 kb on - strand at 3157.520 kb on - strand at 3157.520 kb on - strand at 3157.524 kb on - strand at 3157.567 kb on + strand at 3157.567 kb on + strand at 3157.567 kb on + strand at 3157.657 kb on - strand at 3157.835 kb on + strand, within AO353_14220 at 3158.085 kb on - strand, within AO353_14220 at 3158.270 kb on - strand, within AO353_14220 at 3158.579 kb on + strand at 3158.579 kb on + strand at 3158.580 kb on - strand at 3158.712 kb on + strand, within AO353_14225 at 3158.749 kb on - strand, within AO353_14225 at 3158.758 kb on + strand, within AO353_14225 at 3158.758 kb on + strand, within AO353_14225 at 3158.758 kb on + strand, within AO353_14225 at 3158.758 kb on + strand, within AO353_14225 at 3158.758 kb on + strand, within AO353_14225 at 3158.759 kb on - strand, within AO353_14225 at 3158.759 kb on - strand, within AO353_14225 at 3158.823 kb on + strand, within AO353_14225 at 3158.823 kb on + strand, within AO353_14225 at 3158.824 kb on - strand, within AO353_14225 at 3158.824 kb on - strand, within AO353_14225 at 3158.954 kb on + strand, within AO353_14225 at 3159.098 kb on + strand, within AO353_14225 at 3159.099 kb on - strand, within AO353_14225 at 3159.112 kb on + strand, within AO353_14225 at 3159.112 kb on + strand, within AO353_14225 at 3159.112 kb on + strand, within AO353_14225 at 3159.112 kb on + strand, within AO353_14225 at 3159.112 kb on + strand, within AO353_14225 at 3159.112 kb on + strand, within AO353_14225 at 3159.112 kb on + strand, within AO353_14225 at 3159.112 kb on + strand, within AO353_14225 at 3159.112 kb on + strand, within AO353_14225 at 3159.112 kb on + strand, within AO353_14225 at 3159.112 kb on + strand, within AO353_14225 at 3159.112 kb on + strand, within AO353_14225 at 3159.112 kb on + strand, within AO353_14225 at 3159.112 kb on + strand, within AO353_14225 at 3159.112 kb on + strand, within AO353_14225 at 3159.112 kb on + strand, within AO353_14225 at 3159.112 kb on + strand, within AO353_14225 at 3159.112 kb on + strand, within AO353_14225 at 3159.112 kb on + strand, within AO353_14225 at 3159.112 kb on + strand, within AO353_14225 at 3159.112 kb on + strand, within AO353_14225 at 3159.112 kb on + strand, within AO353_14225 at 3159.113 kb on - strand, within AO353_14225 at 3159.113 kb on - strand, within AO353_14225 at 3159.113 kb on - strand, within AO353_14225 at 3159.113 kb on - strand, within AO353_14225 at 3159.113 kb on - strand, within AO353_14225 at 3159.113 kb on - strand, within AO353_14225 at 3159.113 kb on - strand, within AO353_14225 at 3159.113 kb on - strand, within AO353_14225 at 3159.113 kb on - strand, within AO353_14225 at 3159.113 kb on - strand, within AO353_14225 at 3159.113 kb on - strand, within AO353_14225 at 3159.113 kb on - strand, within AO353_14225 at 3159.113 kb on - strand, within AO353_14225 at 3159.113 kb on - strand, within AO353_14225 at 3159.113 kb on - strand, within AO353_14225 at 3159.113 kb on - strand, within AO353_14225 at 3159.113 kb on - strand, within AO353_14225 at 3159.114 kb on + strand, within AO353_14225 at 3159.114 kb on + strand, within AO353_14225 at 3159.114 kb on + strand, within AO353_14225 at 3159.114 kb on + strand, within AO353_14225 at 3159.114 kb on + strand, within AO353_14225 at 3159.114 kb on + strand, within AO353_14225 at 3159.115 kb on - strand, within AO353_14225 at 3159.115 kb on - strand, within AO353_14225 at 3159.150 kb on + strand, within AO353_14225 at 3159.151 kb on - strand, within AO353_14225 at 3159.151 kb on - strand, within AO353_14225 at 3159.161 kb on - strand, within AO353_14225 at 3159.265 kb on + strand at 3159.265 kb on + strand at 3159.265 kb on + strand at 3159.265 kb on + strand at 3159.266 kb on - strand at 3159.266 kb on - strand at 3159.266 kb on - strand at 3159.266 kb on - strand at 3159.266 kb on - strand at 3159.266 kb on - strand at 3159.319 kb on + strand at 3159.320 kb on - strand at 3159.320 kb on - strand at 3159.344 kb on + strand at 3159.344 kb on + strand at 3159.344 kb on + strand at 3159.345 kb on - strand at 3159.345 kb on - strand at 3159.348 kb on + strand at 3159.348 kb on + strand at 3159.348 kb on + strand at 3159.349 kb on - strand at 3159.349 kb on - strand at 3159.349 kb on - strand at 3159.349 kb on - strand at 3159.349 kb on - strand at 3159.349 kb on - strand at 3159.397 kb on - strand at 3159.397 kb on - strand at 3159.397 kb on - strand at 3159.397 kb on - strand at 3159.397 kb on - strand at 3159.398 kb on + strand at 3159.398 kb on + strand at 3159.398 kb on + strand at 3159.398 kb on + strand at 3159.398 kb on + strand at 3159.398 kb on + strand at 3159.399 kb on - strand at 3159.408 kb on - strand at 3159.414 kb on + strand at 3159.415 kb on - strand at 3159.426 kb on - strand at 3159.426 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 3,157,441 - -1.4 3,157,441 - +0.9 3,157,476 - -1.8 3,157,476 - -1.8 3,157,520 - -1.4 3,157,520 - -1.4 3,157,524 - +0.2 3,157,567 + -1.8 3,157,567 + -0.4 3,157,567 + -1.7 3,157,657 - -1.4 3,157,835 + AO353_14220 0.27 -2.1 3,158,085 - AO353_14220 0.53 -2.4 3,158,270 - AO353_14220 0.72 -1.8 3,158,579 + +3.4 3,158,579 + +1.6 3,158,580 - +1.0 3,158,712 + AO353_14225 0.24 -1.8 3,158,749 - AO353_14225 0.29 +0.8 3,158,758 + AO353_14225 0.31 +1.6 3,158,758 + AO353_14225 0.31 +1.5 3,158,758 + AO353_14225 0.31 -1.8 3,158,758 + AO353_14225 0.31 +0.2 3,158,758 + AO353_14225 0.31 +3.3 3,158,759 - AO353_14225 0.31 +0.2 3,158,759 - AO353_14225 0.31 -1.8 3,158,823 + AO353_14225 0.40 -1.4 3,158,823 + AO353_14225 0.40 -2.6 3,158,824 - AO353_14225 0.40 -3.2 3,158,824 - AO353_14225 0.40 -1.4 3,158,954 + AO353_14225 0.58 -1.4 3,159,098 + AO353_14225 0.77 +0.6 3,159,099 - AO353_14225 0.78 -2.1 3,159,112 + AO353_14225 0.79 +2.1 3,159,112 + AO353_14225 0.79 -0.8 3,159,112 + AO353_14225 0.79 +0.8 3,159,112 + AO353_14225 0.79 -1.4 3,159,112 + AO353_14225 0.79 +0.6 3,159,112 + AO353_14225 0.79 +1.1 3,159,112 + AO353_14225 0.79 +1.0 3,159,112 + AO353_14225 0.79 +0.8 3,159,112 + AO353_14225 0.79 -1.8 3,159,112 + AO353_14225 0.79 -1.4 3,159,112 + AO353_14225 0.79 +0.2 3,159,112 + AO353_14225 0.79 +0.7 3,159,112 + AO353_14225 0.79 +0.8 3,159,112 + AO353_14225 0.79 -0.5 3,159,112 + AO353_14225 0.79 -1.6 3,159,112 + AO353_14225 0.79 -2.4 3,159,112 + AO353_14225 0.79 -0.8 3,159,112 + AO353_14225 0.79 -1.4 3,159,112 + AO353_14225 0.79 -0.8 3,159,112 + AO353_14225 0.79 +0.2 3,159,112 + AO353_14225 0.79 +0.2 3,159,112 + AO353_14225 0.79 +0.4 3,159,113 - AO353_14225 0.79 -0.8 3,159,113 - AO353_14225 0.79 +0.2 3,159,113 - AO353_14225 0.79 +1.6 3,159,113 - AO353_14225 0.79 +0.6 3,159,113 - AO353_14225 0.79 +3.6 3,159,113 - AO353_14225 0.79 +2.0 3,159,113 - AO353_14225 0.79 -0.8 3,159,113 - AO353_14225 0.79 -2.8 3,159,113 - AO353_14225 0.79 -1.4 3,159,113 - AO353_14225 0.79 -0.8 3,159,113 - AO353_14225 0.79 +0.2 3,159,113 - AO353_14225 0.79 +0.2 3,159,113 - AO353_14225 0.79 -0.4 3,159,113 - AO353_14225 0.79 -1.6 3,159,113 - AO353_14225 0.79 +1.8 3,159,113 - AO353_14225 0.79 +0.5 3,159,113 - AO353_14225 0.79 -0.6 3,159,114 + AO353_14225 0.80 +3.2 3,159,114 + AO353_14225 0.80 -0.8 3,159,114 + AO353_14225 0.80 -2.1 3,159,114 + AO353_14225 0.80 +1.2 3,159,114 + AO353_14225 0.80 +0.8 3,159,114 + AO353_14225 0.80 -2.6 3,159,115 - AO353_14225 0.80 +0.2 3,159,115 - AO353_14225 0.80 +1.2 3,159,150 + AO353_14225 0.85 -1.4 3,159,151 - AO353_14225 0.85 -1.1 3,159,151 - AO353_14225 0.85 -1.8 3,159,161 - AO353_14225 0.86 -0.1 3,159,265 + +0.0 3,159,265 + -0.2 3,159,265 + -0.1 3,159,265 + +1.0 3,159,266 - -2.1 3,159,266 - -0.8 3,159,266 - -2.1 3,159,266 - -2.4 3,159,266 - -0.9 3,159,266 - -1.8 3,159,319 + -1.4 3,159,320 - +3.0 3,159,320 - +1.1 3,159,344 + +1.4 3,159,344 + -2.4 3,159,344 + -0.4 3,159,345 - -0.6 3,159,345 - +1.1 3,159,348 + -0.8 3,159,348 + +2.2 3,159,348 + +2.6 3,159,349 - -2.0 3,159,349 - -1.8 3,159,349 - +0.2 3,159,349 - -1.4 3,159,349 - +1.0 3,159,349 - +0.8 3,159,397 - +2.3 3,159,397 - -1.8 3,159,397 - +1.6 3,159,397 - -1.8 3,159,397 - +0.4 3,159,398 + -0.4 3,159,398 + -1.8 3,159,398 + +0.2 3,159,398 + +1.6 3,159,398 + +1.2 3,159,398 + -0.2 3,159,399 - +1.9 3,159,408 - +0.2 3,159,414 + -1.8 3,159,415 - -0.8 3,159,426 - +0.0 3,159,426 - -0.8
Or see this region's nucleotide sequence