Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_12175

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_12170 and AO353_12175 are separated by 330 nucleotidesAO353_12175 and AO353_12180 are separated by 139 nucleotides AO353_12170: AO353_12170 - glutamine synthetase, at 2,671,291 to 2,672,697 _12170 AO353_12175: AO353_12175 - tRNA s(4)U8 sulfurtransferase, at 2,673,028 to 2,674,482 _12175 AO353_12180: AO353_12180 - GTP-binding protein TypA, at 2,674,622 to 2,676,442 _12180 Position (kb) 2673 2674 2675Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2672.727 kb on - strandat 2672.727 kb on - strandat 2672.727 kb on - strandat 2672.727 kb on - strandat 2672.740 kb on - strandat 2672.740 kb on - strandat 2672.766 kb on - strandat 2672.829 kb on + strandat 2672.829 kb on + strandat 2672.829 kb on + strandat 2672.830 kb on - strandat 2672.830 kb on - strandat 2672.849 kb on + strandat 2672.849 kb on + strandat 2672.849 kb on + strandat 2672.849 kb on + strandat 2672.849 kb on + strandat 2672.849 kb on + strandat 2672.849 kb on + strandat 2672.849 kb on + strandat 2672.850 kb on - strandat 2672.850 kb on - strandat 2672.850 kb on - strandat 2672.850 kb on - strandat 2672.850 kb on - strandat 2672.851 kb on + strandat 2672.851 kb on + strandat 2672.851 kb on + strandat 2672.852 kb on - strandat 2672.859 kb on + strandat 2672.860 kb on - strandat 2672.869 kb on + strandat 2672.870 kb on - strandat 2672.897 kb on - strandat 2672.897 kb on - strandat 2672.951 kb on + strandat 2672.980 kb on + strandat 2672.980 kb on + strandat 2672.982 kb on + strandat 2672.982 kb on + strandat 2672.982 kb on + strandat 2674.480 kb on + strandat 2674.480 kb on + strandat 2674.480 kb on + strandat 2674.480 kb on + strandat 2674.481 kb on - strandat 2674.563 kb on + strandat 2674.563 kb on + strandat 2674.568 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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2,672,727 - -1.2
2,672,727 - -1.6
2,672,727 - -0.2
2,672,727 - -0.2
2,672,740 - +0.4
2,672,740 - -2.6
2,672,766 - -2.2
2,672,829 + -2.0
2,672,829 + -3.1
2,672,829 + -0.6
2,672,830 - -1.6
2,672,830 - -0.6
2,672,849 + -1.2
2,672,849 + +0.4
2,672,849 + -2.0
2,672,849 + -2.2
2,672,849 + -0.6
2,672,849 + +0.4
2,672,849 + -2.3
2,672,849 + -1.6
2,672,850 - -1.2
2,672,850 - -0.6
2,672,850 - -1.2
2,672,850 - -1.6
2,672,850 - +0.4
2,672,851 + -0.9
2,672,851 + +0.1
2,672,851 + +0.4
2,672,852 - -1.6
2,672,859 + +1.2
2,672,860 - -2.0
2,672,869 + -1.2
2,672,870 - -1.6
2,672,897 - -1.2
2,672,897 - -1.2
2,672,951 + -0.6
2,672,980 + +0.4
2,672,980 + -2.0
2,672,982 + -1.2
2,672,982 + -0.6
2,672,982 + -0.6
2,674,480 + +2.2
2,674,480 + +0.4
2,674,480 + -0.6
2,674,480 + -1.2
2,674,481 - +0.4
2,674,563 + -1.6
2,674,563 + -0.6
2,674,568 + +0.4

Or see this region's nucleotide sequence