Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_11740

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_11730 and AO353_11735 are separated by 214 nucleotidesAO353_11735 and AO353_11740 overlap by 1 nucleotidesAO353_11740 and AO353_11745 are separated by 361 nucleotides AO353_11730: AO353_11730 - glutamate--cysteine ligase, at 2,588,787 to 2,590,370 _11730 AO353_11735: AO353_11735 - hypothetical protein, at 2,590,585 to 2,590,968 _11735 AO353_11740: AO353_11740 - DNA damage response protein (yhgF like) (from data), at 2,590,968 to 2,593,292 _11740 AO353_11745: AO353_11745 - chemotaxis protein CheY, at 2,593,654 to 2,594,394 _11745 Position (kb) 2590 2591 2592 2593 2594Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2589.979 kb on + strand, within AO353_11730at 2589.979 kb on + strand, within AO353_11730at 2589.979 kb on + strand, within AO353_11730at 2589.979 kb on + strand, within AO353_11730at 2589.980 kb on - strand, within AO353_11730at 2589.980 kb on - strand, within AO353_11730at 2589.980 kb on - strand, within AO353_11730at 2589.980 kb on - strand, within AO353_11730at 2589.980 kb on - strand, within AO353_11730at 2589.980 kb on - strand, within AO353_11730at 2589.980 kb on - strand, within AO353_11730at 2590.009 kb on + strand, within AO353_11730at 2590.009 kb on + strand, within AO353_11730at 2590.010 kb on - strand, within AO353_11730at 2590.010 kb on - strand, within AO353_11730at 2590.013 kb on - strand, within AO353_11730at 2590.013 kb on - strand, within AO353_11730at 2590.025 kb on + strand, within AO353_11730at 2590.072 kb on + strand, within AO353_11730at 2590.072 kb on + strand, within AO353_11730at 2590.073 kb on - strand, within AO353_11730at 2590.094 kb on - strand, within AO353_11730at 2590.424 kb on + strandat 2590.424 kb on + strandat 2590.424 kb on + strandat 2590.424 kb on + strandat 2590.424 kb on + strandat 2590.438 kb on + strandat 2590.439 kb on - strandat 2590.496 kb on - strandat 2590.496 kb on - strandat 2590.496 kb on - strandat 2590.496 kb on - strandat 2590.562 kb on + strandat 2590.563 kb on - strandat 2590.586 kb on + strandat 2590.586 kb on + strandat 2590.587 kb on - strandat 2590.587 kb on - strandat 2590.587 kb on - strandat 2590.727 kb on + strand, within AO353_11735at 2590.727 kb on + strand, within AO353_11735at 2590.727 kb on + strand, within AO353_11735at 2590.727 kb on + strand, within AO353_11735at 2590.727 kb on + strand, within AO353_11735at 2590.727 kb on + strand, within AO353_11735at 2590.727 kb on + strand, within AO353_11735at 2590.727 kb on + strand, within AO353_11735at 2590.727 kb on + strand, within AO353_11735at 2590.727 kb on + strand, within AO353_11735at 2590.727 kb on + strand, within AO353_11735at 2590.728 kb on - strand, within AO353_11735at 2590.728 kb on - strand, within AO353_11735at 2590.728 kb on - strand, within AO353_11735at 2590.728 kb on - strand, within AO353_11735at 2590.728 kb on - strand, within AO353_11735at 2590.728 kb on - strand, within AO353_11735at 2590.728 kb on - strand, within AO353_11735at 2590.728 kb on - strand, within AO353_11735at 2590.851 kb on + strand, within AO353_11735at 2591.261 kb on + strand, within AO353_11740at 2591.261 kb on + strand, within AO353_11740at 2591.261 kb on + strand, within AO353_11740at 2591.261 kb on + strand, within AO353_11740at 2591.262 kb on - strand, within AO353_11740at 2591.262 kb on - strand, within AO353_11740at 2591.262 kb on - strand, within AO353_11740at 2591.485 kb on + strand, within AO353_11740at 2591.485 kb on + strand, within AO353_11740at 2591.486 kb on - strand, within AO353_11740at 2591.486 kb on - strand, within AO353_11740at 2591.486 kb on - strand, within AO353_11740at 2591.486 kb on - strand, within AO353_11740at 2591.486 kb on - strand, within AO353_11740at 2591.486 kb on - strand, within AO353_11740at 2591.486 kb on - strand, within AO353_11740at 2591.582 kb on - strand, within AO353_11740at 2592.031 kb on + strand, within AO353_11740at 2592.031 kb on + strand, within AO353_11740at 2592.032 kb on - strand, within AO353_11740at 2592.032 kb on - strand, within AO353_11740at 2592.032 kb on - strand, within AO353_11740at 2592.032 kb on - strand, within AO353_11740at 2592.442 kb on + strand, within AO353_11740at 2592.442 kb on + strand, within AO353_11740at 2592.442 kb on + strand, within AO353_11740at 2592.442 kb on + strand, within AO353_11740at 2592.443 kb on - strand, within AO353_11740at 2592.443 kb on - strand, within AO353_11740at 2592.443 kb on - strand, within AO353_11740at 2592.443 kb on - strand, within AO353_11740at 2592.751 kb on + strand, within AO353_11740at 2592.751 kb on + strand, within AO353_11740at 2592.751 kb on + strand, within AO353_11740at 2592.751 kb on + strand, within AO353_11740at 2592.752 kb on - strand, within AO353_11740at 2592.752 kb on - strand, within AO353_11740at 2592.752 kb on - strand, within AO353_11740at 2592.752 kb on - strand, within AO353_11740at 2592.752 kb on - strand, within AO353_11740at 2592.752 kb on - strand, within AO353_11740at 2592.808 kb on + strand, within AO353_11740at 2592.808 kb on + strand, within AO353_11740at 2592.808 kb on + strand, within AO353_11740at 2592.808 kb on + strand, within AO353_11740at 2592.808 kb on + strand, within AO353_11740at 2592.808 kb on + strand, within AO353_11740at 2592.808 kb on + strand, within AO353_11740at 2592.808 kb on + strand, within AO353_11740at 2592.808 kb on + strand, within AO353_11740at 2592.808 kb on + strand, within AO353_11740at 2592.808 kb on + strand, within AO353_11740at 2592.808 kb on + strand, within AO353_11740at 2592.808 kb on + strand, within AO353_11740at 2592.808 kb on + strand, within AO353_11740at 2592.808 kb on + strand, within AO353_11740at 2592.808 kb on + strand, within AO353_11740at 2592.809 kb on - strand, within AO353_11740at 2592.809 kb on - strand, within AO353_11740at 2592.809 kb on - strand, within AO353_11740at 2592.809 kb on - strand, within AO353_11740at 2592.809 kb on - strand, within AO353_11740at 2592.809 kb on - strand, within AO353_11740at 2592.809 kb on - strand, within AO353_11740at 2592.809 kb on - strand, within AO353_11740at 2592.809 kb on - strand, within AO353_11740at 2592.809 kb on - strand, within AO353_11740at 2592.809 kb on - strand, within AO353_11740at 2592.809 kb on - strand, within AO353_11740at 2592.980 kb on - strand, within AO353_11740at 2592.980 kb on - strand, within AO353_11740at 2592.980 kb on - strand, within AO353_11740at 2592.989 kb on - strand, within AO353_11740at 2592.989 kb on - strand, within AO353_11740at 2592.989 kb on - strand, within AO353_11740at 2592.989 kb on - strand, within AO353_11740at 2593.114 kb on + strandat 2593.218 kb on + strandat 2593.252 kb on - strandat 2593.252 kb on - strandat 2593.293 kb on - strandat 2593.293 kb on - strandat 2593.293 kb on - strandat 2593.340 kb on - strandat 2593.340 kb on - strandat 2593.340 kb on - strandat 2593.340 kb on - strandat 2593.426 kb on + strandat 2593.426 kb on + strandat 2593.426 kb on + strandat 2593.426 kb on + strandat 2593.426 kb on + strandat 2593.426 kb on + strandat 2593.426 kb on + strandat 2593.426 kb on + strandat 2593.427 kb on - strandat 2593.427 kb on - strandat 2593.427 kb on - strandat 2593.446 kb on + strandat 2593.447 kb on - strandat 2593.504 kb on + strandat 2593.504 kb on + strandat 2593.504 kb on + strandat 2593.504 kb on + strandat 2593.504 kb on + strandat 2593.504 kb on + strandat 2593.504 kb on + strandat 2593.504 kb on + strandat 2593.505 kb on - strandat 2593.505 kb on - strandat 2593.505 kb on - strandat 2593.505 kb on - strandat 2593.505 kb on - strandat 2593.505 kb on - strandat 2593.505 kb on - strandat 2593.505 kb on - strandat 2593.505 kb on - strandat 2593.506 kb on + strandat 2593.507 kb on - strandat 2593.544 kb on - strandat 2593.544 kb on - strandat 2593.549 kb on + strandat 2593.549 kb on + strandat 2593.549 kb on + strandat 2593.550 kb on - strandat 2593.550 kb on - strandat 2593.550 kb on - strandat 2593.550 kb on - strandat 2593.550 kb on - strandat 2593.550 kb on - strandat 2593.605 kb on + strandat 2593.605 kb on + strandat 2593.605 kb on + strandat 2593.605 kb on + strandat 2593.605 kb on + strandat 2593.606 kb on - strandat 2593.606 kb on - strandat 2593.606 kb on - strandat 2593.606 kb on - strandat 2593.617 kb on + strandat 2593.617 kb on + strandat 2593.617 kb on + strandat 2593.617 kb on + strandat 2593.617 kb on + strandat 2593.624 kb on + strandat 2593.624 kb on + strandat 2593.625 kb on - strandat 2593.625 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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2,589,979 + AO353_11730 0.75 -1.6
2,589,979 + AO353_11730 0.75 -1.6
2,589,979 + AO353_11730 0.75 -1.9
2,589,979 + AO353_11730 0.75 -1.9
2,589,980 - AO353_11730 0.75 -0.2
2,589,980 - AO353_11730 0.75 +0.4
2,589,980 - AO353_11730 0.75 -1.2
2,589,980 - AO353_11730 0.75 +0.4
2,589,980 - AO353_11730 0.75 -2.2
2,589,980 - AO353_11730 0.75 +0.4
2,589,980 - AO353_11730 0.75 -1.6
2,590,009 + AO353_11730 0.77 -2.8
2,590,009 + AO353_11730 0.77 -1.2
2,590,010 - AO353_11730 0.77 +0.4
2,590,010 - AO353_11730 0.77 -2.9
2,590,013 - AO353_11730 0.77 -2.2
2,590,013 - AO353_11730 0.77 -0.6
2,590,025 + AO353_11730 0.78 +0.4
2,590,072 + AO353_11730 0.81 +0.4
2,590,072 + AO353_11730 0.81 -0.2
2,590,073 - AO353_11730 0.81 -2.2
2,590,094 - AO353_11730 0.83 +0.4
2,590,424 + -0.6
2,590,424 + -1.2
2,590,424 + -1.2
2,590,424 + -3.7
2,590,424 + -1.2
2,590,438 + +0.4
2,590,439 - +1.7
2,590,496 - -2.2
2,590,496 - -1.2
2,590,496 - +0.6
2,590,496 - +4.1
2,590,562 + -0.6
2,590,563 - -1.6
2,590,586 + +1.1
2,590,586 + -1.2
2,590,587 - +0.4
2,590,587 - +1.2
2,590,587 - +0.0
2,590,727 + AO353_11735 0.37 -1.2
2,590,727 + AO353_11735 0.37 +1.6
2,590,727 + AO353_11735 0.37 -1.9
2,590,727 + AO353_11735 0.37 +0.4
2,590,727 + AO353_11735 0.37 -0.6
2,590,727 + AO353_11735 0.37 -0.5
2,590,727 + AO353_11735 0.37 -1.9
2,590,727 + AO353_11735 0.37 -1.6
2,590,727 + AO353_11735 0.37 -2.9
2,590,727 + AO353_11735 0.37 +0.4
2,590,727 + AO353_11735 0.37 -0.2
2,590,728 - AO353_11735 0.37 +0.4
2,590,728 - AO353_11735 0.37 -2.4
2,590,728 - AO353_11735 0.37 -0.1
2,590,728 - AO353_11735 0.37 +0.4
2,590,728 - AO353_11735 0.37 -0.6
2,590,728 - AO353_11735 0.37 +1.6
2,590,728 - AO353_11735 0.37 -0.6
2,590,728 - AO353_11735 0.37 -1.2
2,590,851 + AO353_11735 0.69 +0.8
2,591,261 + AO353_11740 0.13 -1.2
2,591,261 + AO353_11740 0.13 -0.6
2,591,261 + AO353_11740 0.13 -1.6
2,591,261 + AO353_11740 0.13 +0.4
2,591,262 - AO353_11740 0.13 +1.6
2,591,262 - AO353_11740 0.13 +2.7
2,591,262 - AO353_11740 0.13 +0.2
2,591,485 + AO353_11740 0.22 +1.4
2,591,485 + AO353_11740 0.22 +0.4
2,591,486 - AO353_11740 0.22 -2.2
2,591,486 - AO353_11740 0.22 -1.6
2,591,486 - AO353_11740 0.22 +1.7
2,591,486 - AO353_11740 0.22 -1.6
2,591,486 - AO353_11740 0.22 -1.2
2,591,486 - AO353_11740 0.22 -2.8
2,591,486 - AO353_11740 0.22 -3.1
2,591,582 - AO353_11740 0.26 -1.9
2,592,031 + AO353_11740 0.46 -1.6
2,592,031 + AO353_11740 0.46 -0.6
2,592,032 - AO353_11740 0.46 +0.4
2,592,032 - AO353_11740 0.46 -3.4
2,592,032 - AO353_11740 0.46 -1.6
2,592,032 - AO353_11740 0.46 +0.4
2,592,442 + AO353_11740 0.63 -2.6
2,592,442 + AO353_11740 0.63 -0.2
2,592,442 + AO353_11740 0.63 -2.2
2,592,442 + AO353_11740 0.63 -1.9
2,592,443 - AO353_11740 0.63 +0.4
2,592,443 - AO353_11740 0.63 -0.6
2,592,443 - AO353_11740 0.63 -1.8
2,592,443 - AO353_11740 0.63 +1.1
2,592,751 + AO353_11740 0.77 -1.2
2,592,751 + AO353_11740 0.77 -2.4
2,592,751 + AO353_11740 0.77 -2.5
2,592,751 + AO353_11740 0.77 -0.5
2,592,752 - AO353_11740 0.77 -2.2
2,592,752 - AO353_11740 0.77 -0.6
2,592,752 - AO353_11740 0.77 -1.6
2,592,752 - AO353_11740 0.77 +0.4
2,592,752 - AO353_11740 0.77 -2.4
2,592,752 - AO353_11740 0.77 -1.6
2,592,808 + AO353_11740 0.79 +0.4
2,592,808 + AO353_11740 0.79 +0.4
2,592,808 + AO353_11740 0.79 -1.6
2,592,808 + AO353_11740 0.79 -2.8
2,592,808 + AO353_11740 0.79 -0.6
2,592,808 + AO353_11740 0.79 -1.2
2,592,808 + AO353_11740 0.79 +0.4
2,592,808 + AO353_11740 0.79 +0.4
2,592,808 + AO353_11740 0.79 -1.2
2,592,808 + AO353_11740 0.79 -2.8
2,592,808 + AO353_11740 0.79 +0.4
2,592,808 + AO353_11740 0.79 +0.4
2,592,808 + AO353_11740 0.79 -1.6
2,592,808 + AO353_11740 0.79 +0.4
2,592,808 + AO353_11740 0.79 +0.4
2,592,808 + AO353_11740 0.79 -2.1
2,592,809 - AO353_11740 0.79 +0.4
2,592,809 - AO353_11740 0.79 +1.4
2,592,809 - AO353_11740 0.79 -2.6
2,592,809 - AO353_11740 0.79 -1.2
2,592,809 - AO353_11740 0.79 +0.4
2,592,809 - AO353_11740 0.79 -1.6
2,592,809 - AO353_11740 0.79 -1.2
2,592,809 - AO353_11740 0.79 -1.9
2,592,809 - AO353_11740 0.79 -1.9
2,592,809 - AO353_11740 0.79 -2.4
2,592,809 - AO353_11740 0.79 -0.6
2,592,809 - AO353_11740 0.79 -1.9
2,592,980 - AO353_11740 0.87 -1.9
2,592,980 - AO353_11740 0.87 -1.9
2,592,980 - AO353_11740 0.87 -0.6
2,592,989 - AO353_11740 0.87 +2.1
2,592,989 - AO353_11740 0.87 -2.6
2,592,989 - AO353_11740 0.87 +0.2
2,592,989 - AO353_11740 0.87 +1.5
2,593,114 + -1.2
2,593,218 + -0.6
2,593,252 - -1.6
2,593,252 - -1.2
2,593,293 - -1.2
2,593,293 - +0.4
2,593,293 - +0.4
2,593,340 - +1.1
2,593,340 - +0.4
2,593,340 - -0.6
2,593,340 - +1.2
2,593,426 + -2.4
2,593,426 + +0.4
2,593,426 + +0.4
2,593,426 + -2.4
2,593,426 + +0.4
2,593,426 + +2.0
2,593,426 + -2.2
2,593,426 + -0.6
2,593,427 - -2.6
2,593,427 - -0.6
2,593,427 - +1.3
2,593,446 + -0.6
2,593,447 - -0.6
2,593,504 + -1.2
2,593,504 + +0.4
2,593,504 + -1.2
2,593,504 + +0.4
2,593,504 + -2.4
2,593,504 + -2.2
2,593,504 + -2.2
2,593,504 + -1.2
2,593,505 - +1.4
2,593,505 - +2.4
2,593,505 - +0.0
2,593,505 - +1.3
2,593,505 - +2.7
2,593,505 - -1.6
2,593,505 - -0.6
2,593,505 - -1.6
2,593,505 - -1.6
2,593,506 + -0.6
2,593,507 - +1.5
2,593,544 - +5.4
2,593,544 - +1.9
2,593,549 + -0.0
2,593,549 + -1.2
2,593,549 + -1.2
2,593,550 - +1.0
2,593,550 - +3.0
2,593,550 - -0.6
2,593,550 - +2.1
2,593,550 - +2.0
2,593,550 - -0.0
2,593,605 + -0.3
2,593,605 + -1.9
2,593,605 + -1.9
2,593,605 + +0.8
2,593,605 + -1.6
2,593,606 - -0.2
2,593,606 - -1.6
2,593,606 - +2.5
2,593,606 - -1.2
2,593,617 + -1.6
2,593,617 + +0.9
2,593,617 + -0.6
2,593,617 + -1.2
2,593,617 + -1.6
2,593,624 + -1.6
2,593,624 + -1.6
2,593,625 - -1.2
2,593,625 - +2.9

Or see this region's nucleotide sequence