Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08620

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_08615 and AO353_08620 are separated by 314 nucleotidesAO353_08620 and AO353_08625 are separated by 41 nucleotidesAO353_08625 and AO353_08630 are separated by 33 nucleotides AO353_08615: AO353_08615 - hypothetical protein, at 1,893,910 to 1,894,824 _08615 AO353_08620: AO353_08620 - hypothetical protein, at 1,895,139 to 1,895,510 _08620 AO353_08625: AO353_08625 - hypothetical protein, at 1,895,552 to 1,896,271 _08625 AO353_08630: AO353_08630 - hypothetical protein, at 1,896,305 to 1,897,180 _08630 Position (kb) 1895 1896Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1894.147 kb on - strand, within AO353_08615at 1894.170 kb on - strand, within AO353_08615at 1894.251 kb on + strand, within AO353_08615at 1894.252 kb on - strand, within AO353_08615at 1894.252 kb on - strand, within AO353_08615at 1894.341 kb on + strand, within AO353_08615at 1894.344 kb on + strand, within AO353_08615at 1894.344 kb on + strand, within AO353_08615at 1894.344 kb on + strand, within AO353_08615at 1894.345 kb on - strand, within AO353_08615at 1894.345 kb on - strand, within AO353_08615at 1894.416 kb on + strand, within AO353_08615at 1894.418 kb on + strand, within AO353_08615at 1894.418 kb on + strand, within AO353_08615at 1894.419 kb on - strand, within AO353_08615at 1894.425 kb on + strand, within AO353_08615at 1894.548 kb on - strand, within AO353_08615at 1894.548 kb on - strand, within AO353_08615at 1894.569 kb on - strand, within AO353_08615at 1894.584 kb on + strand, within AO353_08615at 1894.766 kb on - strandat 1894.770 kb on - strandat 1894.891 kb on + strandat 1894.900 kb on - strandat 1894.902 kb on + strandat 1894.932 kb on - strandat 1894.960 kb on + strandat 1894.961 kb on - strandat 1895.010 kb on - strandat 1895.061 kb on - strandat 1895.120 kb on - strandat 1895.121 kb on + strandat 1895.124 kb on - strandat 1895.124 kb on - strandat 1895.124 kb on - strandat 1895.168 kb on + strandat 1895.308 kb on - strand, within AO353_08620at 1895.498 kb on - strandat 1895.623 kb on + strandat 1895.684 kb on - strand, within AO353_08625at 1895.685 kb on + strand, within AO353_08625at 1895.691 kb on - strand, within AO353_08625at 1895.714 kb on - strand, within AO353_08625at 1895.736 kb on + strand, within AO353_08625at 1895.736 kb on + strand, within AO353_08625at 1895.736 kb on + strand, within AO353_08625at 1895.736 kb on + strand, within AO353_08625at 1895.736 kb on + strand, within AO353_08625at 1895.736 kb on + strand, within AO353_08625at 1895.736 kb on + strand, within AO353_08625at 1895.737 kb on - strand, within AO353_08625at 1895.737 kb on - strand, within AO353_08625at 1895.815 kb on + strand, within AO353_08625at 1895.816 kb on - strand, within AO353_08625at 1895.817 kb on + strand, within AO353_08625at 1895.818 kb on - strand, within AO353_08625at 1895.818 kb on - strand, within AO353_08625at 1895.818 kb on - strand, within AO353_08625at 1895.818 kb on - strand, within AO353_08625at 1895.818 kb on - strand, within AO353_08625at 1895.818 kb on - strand, within AO353_08625at 1895.818 kb on - strand, within AO353_08625at 1895.883 kb on + strand, within AO353_08625at 1895.883 kb on + strand, within AO353_08625at 1895.969 kb on + strand, within AO353_08625at 1895.969 kb on + strand, within AO353_08625at 1895.969 kb on + strand, within AO353_08625at 1895.970 kb on - strand, within AO353_08625at 1895.970 kb on - strand, within AO353_08625at 1895.974 kb on + strand, within AO353_08625at 1895.974 kb on + strand, within AO353_08625at 1895.974 kb on + strand, within AO353_08625at 1895.975 kb on - strand, within AO353_08625at 1895.975 kb on - strand, within AO353_08625at 1895.975 kb on - strand, within AO353_08625at 1895.978 kb on + strand, within AO353_08625at 1895.978 kb on + strand, within AO353_08625at 1895.978 kb on + strand, within AO353_08625at 1895.978 kb on + strand, within AO353_08625at 1895.978 kb on + strand, within AO353_08625at 1895.979 kb on - strand, within AO353_08625at 1895.979 kb on - strand, within AO353_08625at 1895.980 kb on + strand, within AO353_08625at 1895.980 kb on + strand, within AO353_08625at 1895.981 kb on - strand, within AO353_08625at 1896.033 kb on + strand, within AO353_08625at 1896.033 kb on + strand, within AO353_08625at 1896.061 kb on + strand, within AO353_08625at 1896.130 kb on + strand, within AO353_08625at 1896.130 kb on + strand, within AO353_08625at 1896.130 kb on + strand, within AO353_08625at 1896.130 kb on + strand, within AO353_08625at 1896.270 kb on - strandat 1896.270 kb on - strandat 1896.290 kb on - strandat 1896.506 kb on + strand, within AO353_08630

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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1,894,147 - AO353_08615 0.26 -2.2
1,894,170 - AO353_08615 0.28 -0.6
1,894,251 + AO353_08615 0.37 -0.7
1,894,252 - AO353_08615 0.37 +0.4
1,894,252 - AO353_08615 0.37 -1.9
1,894,341 + AO353_08615 0.47 -0.6
1,894,344 + AO353_08615 0.47 +0.4
1,894,344 + AO353_08615 0.47 +0.2
1,894,344 + AO353_08615 0.47 -0.9
1,894,345 - AO353_08615 0.48 -1.6
1,894,345 - AO353_08615 0.48 +1.3
1,894,416 + AO353_08615 0.55 +1.4
1,894,418 + AO353_08615 0.56 -1.3
1,894,418 + AO353_08615 0.56 -0.6
1,894,419 - AO353_08615 0.56 -1.6
1,894,425 + AO353_08615 0.56 -1.6
1,894,548 - AO353_08615 0.70 +0.4
1,894,548 - AO353_08615 0.70 +0.4
1,894,569 - AO353_08615 0.72 -1.4
1,894,584 + AO353_08615 0.74 +1.8
1,894,766 - +0.4
1,894,770 - -2.9
1,894,891 + -0.2
1,894,900 - +0.0
1,894,902 + -1.6
1,894,932 - +1.2
1,894,960 + -1.2
1,894,961 - -1.2
1,895,010 - +0.4
1,895,061 - -2.6
1,895,120 - -0.6
1,895,121 + -2.6
1,895,124 - +0.4
1,895,124 - -1.6
1,895,124 - +0.4
1,895,168 + +0.4
1,895,308 - AO353_08620 0.45 -1.6
1,895,498 - -1.6
1,895,623 + -0.6
1,895,684 - AO353_08625 0.18 -0.6
1,895,685 + AO353_08625 0.18 +3.0
1,895,691 - AO353_08625 0.19 -0.2
1,895,714 - AO353_08625 0.23 -1.2
1,895,736 + AO353_08625 0.26 -1.6
1,895,736 + AO353_08625 0.26 -1.6
1,895,736 + AO353_08625 0.26 -1.2
1,895,736 + AO353_08625 0.26 -2.4
1,895,736 + AO353_08625 0.26 -0.6
1,895,736 + AO353_08625 0.26 -1.2
1,895,736 + AO353_08625 0.26 -2.2
1,895,737 - AO353_08625 0.26 +0.8
1,895,737 - AO353_08625 0.26 -0.6
1,895,815 + AO353_08625 0.37 +2.5
1,895,816 - AO353_08625 0.37 +0.3
1,895,817 + AO353_08625 0.37 +1.8
1,895,818 - AO353_08625 0.37 +0.4
1,895,818 - AO353_08625 0.37 +2.4
1,895,818 - AO353_08625 0.37 +1.9
1,895,818 - AO353_08625 0.37 -2.6
1,895,818 - AO353_08625 0.37 +0.1
1,895,818 - AO353_08625 0.37 -2.2
1,895,818 - AO353_08625 0.37 -1.2
1,895,883 + AO353_08625 0.46 +2.0
1,895,883 + AO353_08625 0.46 +1.8
1,895,969 + AO353_08625 0.58 -1.2
1,895,969 + AO353_08625 0.58 +2.2
1,895,969 + AO353_08625 0.58 -1.6
1,895,970 - AO353_08625 0.58 +0.4
1,895,970 - AO353_08625 0.58 +3.2
1,895,974 + AO353_08625 0.59 +0.1
1,895,974 + AO353_08625 0.59 -0.2
1,895,974 + AO353_08625 0.59 +0.4
1,895,975 - AO353_08625 0.59 +0.0
1,895,975 - AO353_08625 0.59 +2.8
1,895,975 - AO353_08625 0.59 -2.7
1,895,978 + AO353_08625 0.59 +0.4
1,895,978 + AO353_08625 0.59 -0.6
1,895,978 + AO353_08625 0.59 +1.3
1,895,978 + AO353_08625 0.59 +0.4
1,895,978 + AO353_08625 0.59 -1.6
1,895,979 - AO353_08625 0.59 -1.2
1,895,979 - AO353_08625 0.59 -3.0
1,895,980 + AO353_08625 0.59 +2.4
1,895,980 + AO353_08625 0.59 -1.9
1,895,981 - AO353_08625 0.60 -2.2
1,896,033 + AO353_08625 0.67 -0.3
1,896,033 + AO353_08625 0.67 +0.0
1,896,061 + AO353_08625 0.71 -1.2
1,896,130 + AO353_08625 0.80 +2.0
1,896,130 + AO353_08625 0.80 -1.6
1,896,130 + AO353_08625 0.80 +0.7
1,896,130 + AO353_08625 0.80 -3.2
1,896,270 - -1.2
1,896,270 - -1.2
1,896,290 - +3.0
1,896,506 + AO353_08630 0.23 -1.2

Or see this region's nucleotide sequence