Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08010

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_08000 and AO353_08005 are separated by 176 nucleotidesAO353_08005 and AO353_08010 are separated by 322 nucleotidesAO353_08010 and AO353_08015 are separated by 192 nucleotides AO353_08000: AO353_08000 - arabinose transporter permease, at 1,763,467 to 1,764,636 _08000 AO353_08005: AO353_08005 - thioesterase, at 1,764,813 to 1,765,217 _08005 AO353_08010: AO353_08010 - adenosylhomocysteinase, at 1,765,540 to 1,766,949 _08010 AO353_08015: AO353_08015 - 5,10-methylenetetrahydrofolate reductase, at 1,767,142 to 1,767,987 _08015 Position (kb) 1765 1766 1767Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1764.588 kb on + strandat 1764.588 kb on + strandat 1764.588 kb on + strandat 1764.588 kb on + strandat 1764.589 kb on - strandat 1764.589 kb on - strandat 1764.592 kb on + strandat 1764.592 kb on + strandat 1764.593 kb on - strandat 1764.593 kb on - strandat 1764.593 kb on - strandat 1764.593 kb on - strandat 1764.593 kb on - strandat 1764.593 kb on - strandat 1764.641 kb on + strandat 1764.641 kb on + strandat 1764.641 kb on + strandat 1764.641 kb on + strandat 1764.641 kb on + strandat 1764.642 kb on - strandat 1764.642 kb on - strandat 1764.642 kb on - strandat 1764.642 kb on - strandat 1764.642 kb on - strandat 1764.642 kb on - strandat 1764.642 kb on - strandat 1764.642 kb on - strandat 1764.642 kb on - strandat 1764.642 kb on - strandat 1764.642 kb on - strandat 1764.642 kb on - strandat 1764.642 kb on - strandat 1764.645 kb on + strandat 1764.645 kb on + strandat 1764.646 kb on - strandat 1764.646 kb on - strandat 1764.646 kb on - strandat 1764.646 kb on - strandat 1764.646 kb on - strandat 1764.646 kb on - strandat 1764.646 kb on - strandat 1764.660 kb on + strandat 1764.660 kb on + strandat 1764.661 kb on - strandat 1764.661 kb on - strandat 1764.661 kb on - strandat 1764.713 kb on + strandat 1764.853 kb on + strandat 1764.853 kb on + strandat 1764.853 kb on + strandat 1764.853 kb on + strandat 1764.853 kb on + strandat 1764.853 kb on + strandat 1764.853 kb on - strandat 1764.854 kb on - strand, within AO353_08005at 1764.854 kb on - strand, within AO353_08005at 1764.854 kb on - strand, within AO353_08005at 1764.854 kb on - strand, within AO353_08005at 1764.854 kb on - strand, within AO353_08005at 1764.854 kb on - strand, within AO353_08005at 1764.986 kb on + strand, within AO353_08005at 1765.011 kb on - strand, within AO353_08005at 1765.069 kb on + strand, within AO353_08005at 1765.069 kb on + strand, within AO353_08005at 1765.070 kb on - strand, within AO353_08005at 1765.070 kb on - strand, within AO353_08005at 1765.070 kb on - strand, within AO353_08005at 1765.070 kb on - strand, within AO353_08005at 1765.070 kb on - strand, within AO353_08005at 1765.070 kb on - strand, within AO353_08005at 1765.070 kb on - strand, within AO353_08005at 1765.070 kb on - strand, within AO353_08005at 1765.111 kb on + strand, within AO353_08005at 1765.111 kb on + strand, within AO353_08005at 1765.111 kb on + strand, within AO353_08005at 1765.111 kb on + strand, within AO353_08005at 1765.111 kb on + strand, within AO353_08005at 1765.112 kb on - strand, within AO353_08005at 1765.112 kb on - strand, within AO353_08005at 1765.112 kb on - strand, within AO353_08005at 1765.191 kb on + strandat 1765.191 kb on + strandat 1765.191 kb on + strandat 1765.191 kb on + strandat 1765.191 kb on + strandat 1765.294 kb on + strandat 1765.294 kb on + strandat 1765.295 kb on - strandat 1765.295 kb on - strandat 1765.359 kb on + strandat 1765.359 kb on + strandat 1765.359 kb on + strandat 1765.360 kb on - strandat 1765.361 kb on + strandat 1765.518 kb on + strandat 1765.518 kb on + strandat 1765.518 kb on + strandat 1765.518 kb on + strandat 1765.518 kb on + strandat 1765.518 kb on + strandat 1765.518 kb on + strandat 1765.522 kb on + strandat 1765.522 kb on + strandat 1765.522 kb on + strandat 1765.522 kb on + strandat 1765.522 kb on + strandat 1766.950 kb on + strandat 1766.951 kb on - strandat 1766.987 kb on + strandat 1766.987 kb on + strandat 1766.987 kb on + strandat 1766.987 kb on + strandat 1766.987 kb on + strandat 1766.987 kb on + strandat 1766.987 kb on + strandat 1766.987 kb on + strandat 1766.988 kb on - strandat 1766.988 kb on - strandat 1766.988 kb on - strandat 1766.988 kb on - strandat 1766.988 kb on - strandat 1766.988 kb on - strandat 1766.988 kb on - strandat 1766.988 kb on - strandat 1766.988 kb on - strandat 1766.988 kb on - strandat 1766.991 kb on + strandat 1766.991 kb on + strandat 1766.992 kb on - strandat 1766.992 kb on - strandat 1766.992 kb on - strandat 1766.992 kb on - strandat 1766.992 kb on - strandat 1767.004 kb on + strandat 1767.005 kb on - strandat 1767.005 kb on - strandat 1767.009 kb on + strandat 1767.009 kb on + strandat 1767.009 kb on + strandat 1767.010 kb on - strandat 1767.010 kb on - strandat 1767.092 kb on + strandat 1767.092 kb on + strandat 1767.092 kb on + strandat 1767.093 kb on - strandat 1767.093 kb on - strandat 1767.093 kb on - strandat 1767.093 kb on - strandat 1767.111 kb on - strandat 1767.119 kb on + strandat 1767.119 kb on + strandat 1767.119 kb on + strandat 1767.120 kb on - strandat 1767.120 kb on - strandat 1767.136 kb on - strandat 1767.141 kb on + strandat 1767.141 kb on + strandat 1767.141 kb on + strandat 1767.141 kb on + strandat 1767.141 kb on + strandat 1767.141 kb on + strandat 1767.141 kb on + strandat 1767.141 kb on + strandat 1767.142 kb on - strandat 1767.142 kb on - strandat 1767.142 kb on - strandat 1767.142 kb on - strandat 1767.238 kb on + strand, within AO353_08015at 1767.238 kb on + strand, within AO353_08015at 1767.238 kb on + strand, within AO353_08015at 1767.238 kb on + strand, within AO353_08015at 1767.239 kb on - strand, within AO353_08015at 1767.239 kb on - strand, within AO353_08015at 1767.239 kb on - strand, within AO353_08015at 1767.239 kb on - strand, within AO353_08015at 1767.239 kb on - strand, within AO353_08015at 1767.265 kb on + strand, within AO353_08015at 1767.265 kb on + strand, within AO353_08015at 1767.265 kb on + strand, within AO353_08015at 1767.265 kb on + strand, within AO353_08015at 1767.266 kb on - strand, within AO353_08015at 1767.403 kb on + strand, within AO353_08015at 1767.403 kb on + strand, within AO353_08015at 1767.403 kb on + strand, within AO353_08015at 1767.403 kb on + strand, within AO353_08015at 1767.404 kb on - strand, within AO353_08015at 1767.404 kb on - strand, within AO353_08015at 1767.404 kb on - strand, within AO353_08015at 1767.404 kb on - strand, within AO353_08015at 1767.652 kb on + strand, within AO353_08015at 1767.653 kb on - strand, within AO353_08015at 1767.673 kb on + strand, within AO353_08015at 1767.673 kb on + strand, within AO353_08015at 1767.674 kb on - strand, within AO353_08015at 1767.674 kb on - strand, within AO353_08015at 1767.674 kb on - strand, within AO353_08015at 1767.674 kb on - strand, within AO353_08015at 1767.674 kb on - strand, within AO353_08015at 1767.674 kb on - strand, within AO353_08015at 1767.674 kb on - strand, within AO353_08015at 1767.674 kb on - strand, within AO353_08015at 1767.674 kb on - strand, within AO353_08015at 1767.674 kb on - strand, within AO353_08015at 1767.680 kb on - strand, within AO353_08015at 1767.695 kb on + strand, within AO353_08015at 1767.696 kb on - strand, within AO353_08015at 1767.696 kb on - strand, within AO353_08015at 1767.751 kb on + strand, within AO353_08015at 1767.752 kb on - strand, within AO353_08015at 1767.752 kb on - strand, within AO353_08015at 1767.752 kb on - strand, within AO353_08015at 1767.826 kb on + strand, within AO353_08015at 1767.925 kb on + strandat 1767.925 kb on + strandat 1767.925 kb on + strandat 1767.925 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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1,764,588 + -1.2
1,764,588 + -0.6
1,764,588 + +1.0
1,764,588 + +0.0
1,764,589 - +2.7
1,764,589 - -0.6
1,764,592 + -0.4
1,764,592 + +0.4
1,764,593 - -0.3
1,764,593 - +3.6
1,764,593 - -1.2
1,764,593 - +1.8
1,764,593 - -1.9
1,764,593 - -2.4
1,764,641 + -2.4
1,764,641 + +0.8
1,764,641 + +1.6
1,764,641 + -1.9
1,764,641 + +0.8
1,764,642 - +0.4
1,764,642 - +1.2
1,764,642 - +1.4
1,764,642 - -2.6
1,764,642 - -1.6
1,764,642 - -0.6
1,764,642 - -1.2
1,764,642 - +1.1
1,764,642 - +3.1
1,764,642 - -0.6
1,764,642 - +0.4
1,764,642 - +1.4
1,764,642 - +2.0
1,764,645 + -0.8
1,764,645 + -1.2
1,764,646 - -0.4
1,764,646 - +0.4
1,764,646 - +0.4
1,764,646 - -1.6
1,764,646 - +1.2
1,764,646 - +1.8
1,764,646 - +2.0
1,764,660 + -0.6
1,764,660 + -2.2
1,764,661 - +1.6
1,764,661 - +1.0
1,764,661 - -1.2
1,764,713 + +0.8
1,764,853 + -0.5
1,764,853 + -2.6
1,764,853 + +1.4
1,764,853 + +0.4
1,764,853 + -0.6
1,764,853 + -1.2
1,764,853 - -1.2
1,764,854 - AO353_08005 0.10 -0.9
1,764,854 - AO353_08005 0.10 +0.1
1,764,854 - AO353_08005 0.10 -1.2
1,764,854 - AO353_08005 0.10 -1.0
1,764,854 - AO353_08005 0.10 +2.4
1,764,854 - AO353_08005 0.10 -1.2
1,764,986 + AO353_08005 0.43 +2.7
1,765,011 - AO353_08005 0.49 -0.1
1,765,069 + AO353_08005 0.63 +2.1
1,765,069 + AO353_08005 0.63 +1.1
1,765,070 - AO353_08005 0.63 -2.2
1,765,070 - AO353_08005 0.63 -2.4
1,765,070 - AO353_08005 0.63 -1.2
1,765,070 - AO353_08005 0.63 -0.6
1,765,070 - AO353_08005 0.63 -0.0
1,765,070 - AO353_08005 0.63 +0.6
1,765,070 - AO353_08005 0.63 -1.9
1,765,070 - AO353_08005 0.63 -1.4
1,765,111 + AO353_08005 0.74 -2.4
1,765,111 + AO353_08005 0.74 -2.2
1,765,111 + AO353_08005 0.74 -1.6
1,765,111 + AO353_08005 0.74 -2.4
1,765,111 + AO353_08005 0.74 -0.2
1,765,112 - AO353_08005 0.74 -1.2
1,765,112 - AO353_08005 0.74 -0.6
1,765,112 - AO353_08005 0.74 +0.4
1,765,191 + -0.2
1,765,191 + +1.4
1,765,191 + -0.9
1,765,191 + +1.4
1,765,191 + -1.2
1,765,294 + -1.6
1,765,294 + +1.7
1,765,295 - +0.4
1,765,295 - -1.2
1,765,359 + -0.6
1,765,359 + -0.6
1,765,359 + +1.8
1,765,360 - -2.2
1,765,361 + -0.0
1,765,518 + -1.3
1,765,518 + +0.4
1,765,518 + -0.6
1,765,518 + -0.6
1,765,518 + -2.4
1,765,518 + -2.4
1,765,518 + -1.2
1,765,522 + -1.2
1,765,522 + +1.4
1,765,522 + -2.2
1,765,522 + +0.4
1,765,522 + -1.2
1,766,950 + -0.6
1,766,951 - +1.4
1,766,987 + -2.2
1,766,987 + -1.6
1,766,987 + +2.2
1,766,987 + -1.9
1,766,987 + +0.9
1,766,987 + +2.7
1,766,987 + +1.6
1,766,987 + -1.2
1,766,988 - -1.2
1,766,988 - -0.6
1,766,988 - +2.1
1,766,988 - -1.6
1,766,988 - -1.6
1,766,988 - -1.9
1,766,988 - +1.7
1,766,988 - +2.3
1,766,988 - +2.1
1,766,988 - +0.4
1,766,991 + -1.2
1,766,991 + -1.9
1,766,992 - +0.8
1,766,992 - -0.6
1,766,992 - -0.6
1,766,992 - +0.1
1,766,992 - +0.4
1,767,004 + +2.7
1,767,005 - +2.4
1,767,005 - -1.6
1,767,009 + +2.0
1,767,009 + -1.6
1,767,009 + -0.2
1,767,010 - +2.7
1,767,010 - +2.0
1,767,092 + -1.6
1,767,092 + -1.9
1,767,092 + -1.1
1,767,093 - -0.6
1,767,093 - -0.6
1,767,093 - -1.2
1,767,093 - -1.6
1,767,111 - -1.6
1,767,119 + +2.7
1,767,119 + -0.6
1,767,119 + -1.9
1,767,120 - +0.8
1,767,120 - +0.6
1,767,136 - -1.2
1,767,141 + +0.8
1,767,141 + +3.0
1,767,141 + +2.7
1,767,141 + +0.9
1,767,141 + -0.2
1,767,141 + +1.0
1,767,141 + +1.2
1,767,141 + -0.6
1,767,142 - +2.3
1,767,142 - -0.2
1,767,142 - +0.4
1,767,142 - +1.4
1,767,238 + AO353_08015 0.11 +0.4
1,767,238 + AO353_08015 0.11 -1.6
1,767,238 + AO353_08015 0.11 +2.4
1,767,238 + AO353_08015 0.11 +3.4
1,767,239 - AO353_08015 0.11 +3.2
1,767,239 - AO353_08015 0.11 -2.4
1,767,239 - AO353_08015 0.11 -1.2
1,767,239 - AO353_08015 0.11 -1.2
1,767,239 - AO353_08015 0.11 +3.6
1,767,265 + AO353_08015 0.15 +1.0
1,767,265 + AO353_08015 0.15 -0.6
1,767,265 + AO353_08015 0.15 +2.4
1,767,265 + AO353_08015 0.15 +1.2
1,767,266 - AO353_08015 0.15 +2.7
1,767,403 + AO353_08015 0.31 +2.7
1,767,403 + AO353_08015 0.31 -1.2
1,767,403 + AO353_08015 0.31 +0.4
1,767,403 + AO353_08015 0.31 -1.2
1,767,404 - AO353_08015 0.31 -2.4
1,767,404 - AO353_08015 0.31 +0.4
1,767,404 - AO353_08015 0.31 +0.4
1,767,404 - AO353_08015 0.31 +0.4
1,767,652 + AO353_08015 0.60 +1.7
1,767,653 - AO353_08015 0.60 +0.4
1,767,673 + AO353_08015 0.63 +1.4
1,767,673 + AO353_08015 0.63 -1.2
1,767,674 - AO353_08015 0.63 +0.8
1,767,674 - AO353_08015 0.63 -1.2
1,767,674 - AO353_08015 0.63 -1.2
1,767,674 - AO353_08015 0.63 +1.1
1,767,674 - AO353_08015 0.63 -0.6
1,767,674 - AO353_08015 0.63 -1.2
1,767,674 - AO353_08015 0.63 +2.6
1,767,674 - AO353_08015 0.63 +1.1
1,767,674 - AO353_08015 0.63 +2.0
1,767,674 - AO353_08015 0.63 +3.4
1,767,680 - AO353_08015 0.64 -0.6
1,767,695 + AO353_08015 0.65 -1.2
1,767,696 - AO353_08015 0.65 +2.0
1,767,696 - AO353_08015 0.65 +2.0
1,767,751 + AO353_08015 0.72 +2.4
1,767,752 - AO353_08015 0.72 -0.6
1,767,752 - AO353_08015 0.72 +2.0
1,767,752 - AO353_08015 0.72 +3.2
1,767,826 + AO353_08015 0.81 +2.2
1,767,925 + +1.0
1,767,925 + -1.2
1,767,925 + +0.4
1,767,925 + -1.9

Or see this region's nucleotide sequence