Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07970

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_07965 and AO353_07970 are separated by 158 nucleotidesAO353_07970 and AO353_07975 are separated by 95 nucleotidesAO353_07975 and AO353_07980 are separated by 182 nucleotides AO353_07965: AO353_07965 - S-adenosylmethionine synthetase, at 1,756,486 to 1,757,676 _07965 AO353_07970: AO353_07970 - aromatic ring-opening dioxygenase LigA, at 1,757,835 to 1,759,517 _07970 AO353_07975: AO353_07975 - hypothetical protein, at 1,759,613 to 1,760,008 _07975 AO353_07980: AO353_07980 - cytochrome C, at 1,760,191 to 1,760,640 _07980 Position (kb) 1757 1758 1759 1760Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1757.675 kb on - strandat 1757.675 kb on - strandat 1757.675 kb on - strandat 1757.675 kb on - strandat 1757.797 kb on + strandat 1757.797 kb on + strandat 1757.797 kb on + strandat 1757.797 kb on + strandat 1757.798 kb on - strandat 1757.798 kb on - strandat 1757.798 kb on - strandat 1757.798 kb on - strandat 1757.798 kb on - strandat 1757.798 kb on - strandat 1757.903 kb on + strandat 1757.903 kb on + strandat 1757.903 kb on + strandat 1757.903 kb on + strandat 1757.903 kb on + strandat 1757.903 kb on + strandat 1757.903 kb on + strandat 1757.903 kb on + strandat 1757.904 kb on - strandat 1757.985 kb on + strandat 1757.985 kb on + strandat 1757.985 kb on + strandat 1757.985 kb on + strandat 1757.985 kb on + strandat 1757.985 kb on + strandat 1757.985 kb on + strandat 1757.986 kb on - strandat 1757.986 kb on - strandat 1757.986 kb on - strandat 1757.986 kb on - strandat 1758.024 kb on + strand, within AO353_07970at 1758.024 kb on + strand, within AO353_07970at 1758.024 kb on + strand, within AO353_07970at 1758.024 kb on + strand, within AO353_07970at 1758.025 kb on - strand, within AO353_07970at 1758.025 kb on - strand, within AO353_07970at 1758.201 kb on - strand, within AO353_07970at 1758.246 kb on + strand, within AO353_07970at 1758.291 kb on - strand, within AO353_07970at 1758.387 kb on + strand, within AO353_07970at 1758.387 kb on + strand, within AO353_07970at 1758.387 kb on + strand, within AO353_07970at 1758.387 kb on + strand, within AO353_07970at 1758.388 kb on - strand, within AO353_07970at 1758.388 kb on - strand, within AO353_07970at 1758.388 kb on - strand, within AO353_07970at 1758.505 kb on + strand, within AO353_07970at 1758.506 kb on - strand, within AO353_07970at 1758.506 kb on - strand, within AO353_07970at 1758.594 kb on + strand, within AO353_07970at 1758.594 kb on + strand, within AO353_07970at 1758.594 kb on + strand, within AO353_07970at 1758.595 kb on - strand, within AO353_07970at 1758.595 kb on - strand, within AO353_07970at 1758.595 kb on - strand, within AO353_07970at 1758.648 kb on + strand, within AO353_07970at 1758.680 kb on + strand, within AO353_07970at 1758.759 kb on + strand, within AO353_07970at 1758.759 kb on + strand, within AO353_07970at 1758.760 kb on - strand, within AO353_07970at 1758.760 kb on - strand, within AO353_07970at 1759.229 kb on + strand, within AO353_07970at 1759.230 kb on - strand, within AO353_07970at 1759.230 kb on - strand, within AO353_07970at 1759.372 kb on + strandat 1759.372 kb on + strandat 1759.372 kb on + strandat 1759.372 kb on + strandat 1759.372 kb on + strandat 1759.373 kb on - strandat 1759.373 kb on - strandat 1759.373 kb on - strandat 1759.489 kb on + strandat 1759.489 kb on + strandat 1759.490 kb on - strandat 1759.490 kb on - strandat 1759.515 kb on + strandat 1759.515 kb on + strandat 1759.515 kb on + strandat 1759.515 kb on + strandat 1759.515 kb on + strandat 1759.515 kb on + strandat 1759.515 kb on + strandat 1759.515 kb on + strandat 1759.515 kb on + strandat 1759.515 kb on + strandat 1759.515 kb on + strandat 1759.515 kb on + strandat 1759.516 kb on - strandat 1759.516 kb on - strandat 1759.516 kb on - strandat 1759.516 kb on - strandat 1759.516 kb on - strandat 1759.516 kb on - strandat 1759.519 kb on + strandat 1759.519 kb on + strandat 1759.519 kb on + strandat 1759.519 kb on + strandat 1759.519 kb on + strandat 1759.519 kb on + strandat 1759.519 kb on + strandat 1759.519 kb on + strandat 1759.520 kb on - strandat 1759.520 kb on - strandat 1759.520 kb on - strandat 1759.552 kb on + strandat 1760.003 kb on - strandat 1760.003 kb on - strandat 1760.003 kb on - strandat 1760.003 kb on - strandat 1760.006 kb on + strandat 1760.006 kb on + strandat 1760.006 kb on + strandat 1760.006 kb on + strandat 1760.006 kb on + strandat 1760.007 kb on - strandat 1760.007 kb on - strandat 1760.007 kb on - strandat 1760.007 kb on - strandat 1760.007 kb on - strandat 1760.007 kb on - strandat 1760.007 kb on - strandat 1760.173 kb on + strandat 1760.173 kb on + strandat 1760.173 kb on + strandat 1760.173 kb on + strandat 1760.173 kb on + strandat 1760.174 kb on - strandat 1760.174 kb on - strandat 1760.212 kb on - strandat 1760.223 kb on + strandat 1760.223 kb on + strandat 1760.223 kb on + strandat 1760.224 kb on - strandat 1760.224 kb on - strandat 1760.262 kb on + strand, within AO353_07980at 1760.273 kb on + strand, within AO353_07980at 1760.273 kb on + strand, within AO353_07980at 1760.273 kb on + strand, within AO353_07980at 1760.273 kb on + strand, within AO353_07980at 1760.274 kb on - strand, within AO353_07980at 1760.274 kb on - strand, within AO353_07980at 1760.274 kb on - strand, within AO353_07980at 1760.274 kb on - strand, within AO353_07980at 1760.274 kb on - strand, within AO353_07980at 1760.274 kb on - strand, within AO353_07980at 1760.274 kb on - strand, within AO353_07980at 1760.274 kb on - strand, within AO353_07980at 1760.274 kb on - strand, within AO353_07980at 1760.274 kb on - strand, within AO353_07980at 1760.274 kb on - strand, within AO353_07980at 1760.484 kb on + strand, within AO353_07980at 1760.484 kb on + strand, within AO353_07980at 1760.484 kb on + strand, within AO353_07980at 1760.484 kb on + strand, within AO353_07980at 1760.485 kb on - strand, within AO353_07980at 1760.485 kb on - strand, within AO353_07980at 1760.485 kb on - strand, within AO353_07980

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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1,757,675 - -2.0
1,757,675 - -1.6
1,757,675 - +0.4
1,757,675 - -1.6
1,757,797 + -0.0
1,757,797 + -2.4
1,757,797 + -1.9
1,757,797 + -1.9
1,757,798 - +0.4
1,757,798 - +0.4
1,757,798 - -0.6
1,757,798 - +2.1
1,757,798 - +1.6
1,757,798 - +1.6
1,757,903 + +1.1
1,757,903 + -1.6
1,757,903 + -1.2
1,757,903 + -1.6
1,757,903 + -1.9
1,757,903 + -0.6
1,757,903 + +0.4
1,757,903 + -0.6
1,757,904 - -0.9
1,757,985 + -2.2
1,757,985 + +0.4
1,757,985 + +2.4
1,757,985 + +1.2
1,757,985 + -2.8
1,757,985 + -1.6
1,757,985 + +0.8
1,757,986 - -2.2
1,757,986 - -0.8
1,757,986 - +1.2
1,757,986 - -0.6
1,758,024 + AO353_07970 0.11 -1.2
1,758,024 + AO353_07970 0.11 -1.6
1,758,024 + AO353_07970 0.11 +0.4
1,758,024 + AO353_07970 0.11 -0.6
1,758,025 - AO353_07970 0.11 +0.4
1,758,025 - AO353_07970 0.11 -0.6
1,758,201 - AO353_07970 0.22 -1.2
1,758,246 + AO353_07970 0.24 +1.7
1,758,291 - AO353_07970 0.27 -1.9
1,758,387 + AO353_07970 0.33 +2.2
1,758,387 + AO353_07970 0.33 +0.4
1,758,387 + AO353_07970 0.33 -0.2
1,758,387 + AO353_07970 0.33 +2.2
1,758,388 - AO353_07970 0.33 +3.0
1,758,388 - AO353_07970 0.33 +3.2
1,758,388 - AO353_07970 0.33 -1.2
1,758,505 + AO353_07970 0.40 +0.4
1,758,506 - AO353_07970 0.40 -2.4
1,758,506 - AO353_07970 0.40 +2.7
1,758,594 + AO353_07970 0.45 +0.1
1,758,594 + AO353_07970 0.45 +0.4
1,758,594 + AO353_07970 0.45 -3.2
1,758,595 - AO353_07970 0.45 +2.3
1,758,595 - AO353_07970 0.45 -0.1
1,758,595 - AO353_07970 0.45 -1.2
1,758,648 + AO353_07970 0.48 +0.4
1,758,680 + AO353_07970 0.50 -1.6
1,758,759 + AO353_07970 0.55 +1.0
1,758,759 + AO353_07970 0.55 -1.2
1,758,760 - AO353_07970 0.55 -1.2
1,758,760 - AO353_07970 0.55 -0.6
1,759,229 + AO353_07970 0.83 -1.2
1,759,230 - AO353_07970 0.83 -1.2
1,759,230 - AO353_07970 0.83 -1.2
1,759,372 + -1.6
1,759,372 + -0.2
1,759,372 + +0.4
1,759,372 + -0.6
1,759,372 + -2.4
1,759,373 - +1.0
1,759,373 - +2.4
1,759,373 - -0.6
1,759,489 + +1.6
1,759,489 + -1.1
1,759,490 - -2.8
1,759,490 - -2.4
1,759,515 + -1.2
1,759,515 + -0.6
1,759,515 + +1.6
1,759,515 + -0.6
1,759,515 + +0.6
1,759,515 + -1.2
1,759,515 + +0.4
1,759,515 + -1.9
1,759,515 + -0.0
1,759,515 + -1.2
1,759,515 + -0.6
1,759,515 + -2.4
1,759,516 - -1.2
1,759,516 - -1.0
1,759,516 - -1.6
1,759,516 - +1.7
1,759,516 - -0.9
1,759,516 - +0.2
1,759,519 + -1.2
1,759,519 + +1.7
1,759,519 + -3.1
1,759,519 + +2.3
1,759,519 + -2.4
1,759,519 + -0.6
1,759,519 + -2.2
1,759,519 + +0.4
1,759,520 - +0.4
1,759,520 - -2.8
1,759,520 - -0.6
1,759,552 + -2.4
1,760,003 - -2.6
1,760,003 - +3.4
1,760,003 - +0.4
1,760,003 - -1.6
1,760,006 + -0.9
1,760,006 + +2.4
1,760,006 + -1.6
1,760,006 + -0.6
1,760,006 + +1.2
1,760,007 - -2.8
1,760,007 - +1.4
1,760,007 - -1.9
1,760,007 - -1.9
1,760,007 - +0.8
1,760,007 - +0.4
1,760,007 - -3.2
1,760,173 + -1.6
1,760,173 + +0.1
1,760,173 + -1.2
1,760,173 + -2.6
1,760,173 + +1.4
1,760,174 - +0.4
1,760,174 - -2.4
1,760,212 - +0.4
1,760,223 + -0.6
1,760,223 + -2.8
1,760,223 + -0.6
1,760,224 - +0.1
1,760,224 - -1.2
1,760,262 + AO353_07980 0.16 -0.8
1,760,273 + AO353_07980 0.18 +2.0
1,760,273 + AO353_07980 0.18 -0.2
1,760,273 + AO353_07980 0.18 +0.4
1,760,273 + AO353_07980 0.18 -0.9
1,760,274 - AO353_07980 0.18 -1.9
1,760,274 - AO353_07980 0.18 -1.9
1,760,274 - AO353_07980 0.18 +0.4
1,760,274 - AO353_07980 0.18 -2.8
1,760,274 - AO353_07980 0.18 +0.4
1,760,274 - AO353_07980 0.18 -0.4
1,760,274 - AO353_07980 0.18 -0.4
1,760,274 - AO353_07980 0.18 +0.9
1,760,274 - AO353_07980 0.18 +0.4
1,760,274 - AO353_07980 0.18 -1.2
1,760,274 - AO353_07980 0.18 -1.2
1,760,484 + AO353_07980 0.65 -1.2
1,760,484 + AO353_07980 0.65 +3.0
1,760,484 + AO353_07980 0.65 +0.4
1,760,484 + AO353_07980 0.65 +2.2
1,760,485 - AO353_07980 0.65 -0.4
1,760,485 - AO353_07980 0.65 -2.6
1,760,485 - AO353_07980 0.65 -1.2

Or see this region's nucleotide sequence