Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04050 and AO353_04055 are separated by 293 nucleotides AO353_04055 and AO353_04060 are separated by 120 nucleotides AO353_04060 and AO353_04065 overlap by 4 nucleotides
AO353_04050: AO353_04050 - ATP-binding protein, at 870,564 to 871,658
_04050
AO353_04055: AO353_04055 - methionine--tRNA ligase, at 871,952 to 874,003
_04055
AO353_04060: AO353_04060 - NADH:quinone oxidoreductase, at 874,124 to 874,711
_04060
AO353_04065: AO353_04065 - electron transporter RnfB, at 874,708 to 875,922
_04065
Position (kb) 871
872
873
874
875 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 871.702 kb on - strand at 871.702 kb on - strand at 871.702 kb on - strand at 871.702 kb on - strand at 871.760 kb on + strand at 871.767 kb on - strand at 871.802 kb on + strand at 871.802 kb on + strand at 871.802 kb on + strand at 871.802 kb on + strand at 871.802 kb on + strand at 871.803 kb on - strand at 871.803 kb on - strand at 871.803 kb on - strand at 871.803 kb on - strand at 871.803 kb on - strand at 871.803 kb on - strand at 871.803 kb on - strand at 871.803 kb on - strand at 871.804 kb on + strand at 871.804 kb on + strand at 871.804 kb on + strand at 871.804 kb on + strand at 871.804 kb on + strand at 871.804 kb on + strand at 871.804 kb on + strand at 871.804 kb on + strand at 871.805 kb on - strand at 871.805 kb on - strand at 871.805 kb on - strand at 871.805 kb on - strand at 871.805 kb on - strand at 871.805 kb on - strand at 871.805 kb on - strand at 871.805 kb on - strand at 871.852 kb on + strand at 871.852 kb on + strand at 871.853 kb on - strand at 871.853 kb on - strand at 871.853 kb on - strand at 871.868 kb on - strand at 871.897 kb on + strand at 871.897 kb on + strand at 873.691 kb on + strand, within AO353_04055 at 873.691 kb on + strand, within AO353_04055 at 873.691 kb on + strand, within AO353_04055 at 874.001 kb on + strand at 874.001 kb on + strand at 874.001 kb on + strand at 874.001 kb on + strand at 874.001 kb on + strand at 874.001 kb on + strand at 874.001 kb on + strand at 874.001 kb on + strand at 874.001 kb on + strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.002 kb on - strand at 874.060 kb on + strand at 874.075 kb on + strand at 874.089 kb on + strand at 874.089 kb on + strand at 874.168 kb on + strand at 874.168 kb on + strand at 874.313 kb on + strand, within AO353_04060 at 874.313 kb on + strand, within AO353_04060 at 874.352 kb on + strand, within AO353_04060 at 874.352 kb on + strand, within AO353_04060 at 874.352 kb on + strand, within AO353_04060 at 874.352 kb on + strand, within AO353_04060 at 874.353 kb on - strand, within AO353_04060 at 874.353 kb on - strand, within AO353_04060 at 874.380 kb on + strand, within AO353_04060 at 874.380 kb on + strand, within AO353_04060 at 874.381 kb on - strand, within AO353_04060 at 874.381 kb on - strand, within AO353_04060 at 874.390 kb on + strand, within AO353_04060 at 874.391 kb on - strand, within AO353_04060 at 874.523 kb on + strand, within AO353_04060 at 874.524 kb on - strand, within AO353_04060 at 874.530 kb on + strand, within AO353_04060 at 874.530 kb on + strand, within AO353_04060 at 874.530 kb on + strand, within AO353_04060 at 874.536 kb on + strand, within AO353_04060 at 874.536 kb on + strand, within AO353_04060 at 874.536 kb on + strand, within AO353_04060 at 874.536 kb on + strand, within AO353_04060 at 874.536 kb on + strand, within AO353_04060 at 874.537 kb on - strand, within AO353_04060 at 874.537 kb on - strand, within AO353_04060 at 874.537 kb on - strand at 874.537 kb on - strand, within AO353_04060 at 874.725 kb on + strand at 874.725 kb on + strand at 874.725 kb on + strand at 874.787 kb on - strand at 874.933 kb on - strand, within AO353_04065 at 874.986 kb on - strand, within AO353_04065
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 871,702 - -1.5 871,702 - -0.9 871,702 - +0.1 871,702 - -2.5 871,760 + +0.1 871,767 - -1.9 871,802 + -0.9 871,802 + +0.1 871,802 + +1.7 871,802 + -1.5 871,802 + -2.4 871,803 - +1.8 871,803 - -0.4 871,803 - +0.5 871,803 - -0.2 871,803 - -0.9 871,803 - +1.3 871,803 - -0.9 871,803 - -0.9 871,804 + -3.1 871,804 + -0.5 871,804 + +0.1 871,804 + -0.5 871,804 + +0.1 871,804 + -0.9 871,804 + -2.2 871,804 + -1.4 871,805 - -1.9 871,805 - +0.1 871,805 - -0.9 871,805 - -0.9 871,805 - -2.7 871,805 - +0.7 871,805 - +2.6 871,805 - -0.9 871,852 + +0.3 871,852 + -1.9 871,853 - +2.0 871,853 - -0.5 871,853 - -0.3 871,868 - -1.7 871,897 + +2.9 871,897 + +0.6 873,691 + AO353_04055 0.85 -3.1 873,691 + AO353_04055 0.85 -2.9 873,691 + AO353_04055 0.85 -2.2 874,001 + +0.1 874,001 + +0.1 874,001 + +1.0 874,001 + -1.9 874,001 + -2.1 874,001 + -1.9 874,001 + +2.4 874,001 + -2.5 874,001 + -0.9 874,002 - +0.6 874,002 - -2.2 874,002 - +1.7 874,002 - -0.7 874,002 - +2.0 874,002 - -1.5 874,002 - -0.9 874,002 - -1.7 874,002 - +0.8 874,002 - +1.1 874,002 - -1.9 874,002 - +0.3 874,002 - +1.7 874,002 - +1.9 874,002 - +0.6 874,002 - +1.3 874,002 - -1.2 874,002 - -0.9 874,002 - -0.9 874,002 - -2.2 874,060 + +1.8 874,075 + -0.6 874,089 + +0.1 874,089 + +0.6 874,168 + -1.9 874,168 + -0.9 874,313 + AO353_04060 0.32 -2.7 874,313 + AO353_04060 0.32 +2.8 874,352 + AO353_04060 0.39 -0.9 874,352 + AO353_04060 0.39 -3.1 874,352 + AO353_04060 0.39 -1.9 874,352 + AO353_04060 0.39 +1.1 874,353 - AO353_04060 0.39 -1.5 874,353 - AO353_04060 0.39 -1.5 874,380 + AO353_04060 0.44 -0.2 874,380 + AO353_04060 0.44 +3.4 874,381 - AO353_04060 0.44 +0.1 874,381 - AO353_04060 0.44 -0.9 874,390 + AO353_04060 0.45 -0.9 874,391 - AO353_04060 0.45 +1.1 874,523 + AO353_04060 0.68 -1.5 874,524 - AO353_04060 0.68 +0.5 874,530 + AO353_04060 0.69 +0.1 874,530 + AO353_04060 0.69 -1.9 874,530 + AO353_04060 0.69 +0.1 874,536 + AO353_04060 0.70 -0.9 874,536 + AO353_04060 0.70 +0.4 874,536 + AO353_04060 0.70 +0.6 874,536 + AO353_04060 0.70 +2.2 874,536 + AO353_04060 0.70 -2.2 874,537 - AO353_04060 0.70 +0.1 874,537 - AO353_04060 0.70 -0.9 874,537 - +0.1 874,537 - AO353_04060 0.70 -1.9 874,725 + +0.1 874,725 + -3.1 874,725 + -1.5 874,787 - +3.9 874,933 - AO353_04065 0.19 +0.4 874,986 - AO353_04065 0.23 +3.1
Or see this region's nucleotide sequence