Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03495

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03490 and AO353_03495 are separated by 495 nucleotidesAO353_03495 and AO353_03500 are separated by 9 nucleotides AO353_03490: AO353_03490 - Fis family transcriptional regulator, at 745,839 to 747,347 _03490 AO353_03495: AO353_03495 - glycine cleavage system protein H, at 747,843 to 748,226 _03495 AO353_03500: AO353_03500 - Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data), at 748,236 to 751,088 _03500 Position (kb) 747 748 749Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 746.895 kb on + strand, within AO353_03490at 746.896 kb on - strand, within AO353_03490at 746.962 kb on + strand, within AO353_03490at 746.970 kb on + strand, within AO353_03490at 746.970 kb on + strand, within AO353_03490at 746.970 kb on + strand, within AO353_03490at 747.033 kb on + strand, within AO353_03490at 747.243 kb on + strandat 747.244 kb on - strandat 747.244 kb on - strandat 747.252 kb on + strandat 747.252 kb on + strandat 747.252 kb on + strandat 747.252 kb on + strandat 747.252 kb on + strandat 747.253 kb on - strandat 747.253 kb on - strandat 747.324 kb on + strandat 747.324 kb on + strandat 747.325 kb on - strandat 747.418 kb on + strandat 747.437 kb on + strandat 747.437 kb on + strandat 747.437 kb on + strandat 747.437 kb on + strandat 747.438 kb on - strandat 747.438 kb on - strandat 747.438 kb on - strandat 747.438 kb on - strandat 747.600 kb on - strandat 747.631 kb on - strandat 747.668 kb on + strandat 747.710 kb on - strandat 747.751 kb on + strandat 747.752 kb on - strandat 747.752 kb on - strandat 747.832 kb on + strandat 747.833 kb on - strandat 747.833 kb on - strandat 747.861 kb on - strandat 747.958 kb on + strand, within AO353_03495at 747.959 kb on - strand, within AO353_03495at 747.981 kb on + strand, within AO353_03495at 748.038 kb on + strand, within AO353_03495at 748.038 kb on + strand, within AO353_03495at 748.038 kb on + strand, within AO353_03495at 748.038 kb on + strand, within AO353_03495at 748.038 kb on + strand, within AO353_03495at 748.039 kb on - strand, within AO353_03495at 748.039 kb on - strand, within AO353_03495at 748.039 kb on - strand, within AO353_03495at 748.039 kb on - strand, within AO353_03495at 748.039 kb on - strand, within AO353_03495at 748.039 kb on - strand, within AO353_03495at 748.039 kb on - strand, within AO353_03495at 748.192 kb on - strandat 748.246 kb on + strandat 748.246 kb on + strandat 748.246 kb on + strandat 748.246 kb on + strandat 748.246 kb on + strandat 748.247 kb on - strandat 748.247 kb on - strandat 748.247 kb on - strandat 748.247 kb on - strandat 748.252 kb on + strandat 748.252 kb on + strandat 748.252 kb on + strandat 748.252 kb on + strandat 748.252 kb on + strandat 748.252 kb on + strandat 748.253 kb on - strandat 748.479 kb on + strandat 748.479 kb on + strandat 748.480 kb on - strandat 748.480 kb on - strandat 748.480 kb on - strandat 748.480 kb on - strandat 748.480 kb on - strandat 748.480 kb on - strandat 748.480 kb on - strandat 748.480 kb on - strandat 748.494 kb on + strandat 748.494 kb on + strandat 748.494 kb on + strandat 748.495 kb on - strandat 748.497 kb on + strandat 748.497 kb on + strandat 748.497 kb on + strandat 748.497 kb on + strandat 748.497 kb on + strandat 748.497 kb on + strandat 748.497 kb on + strandat 748.498 kb on - strandat 748.498 kb on - strandat 748.498 kb on - strandat 748.498 kb on - strandat 748.498 kb on - strandat 748.498 kb on - strandat 748.498 kb on - strandat 748.508 kb on + strandat 748.554 kb on + strand, within AO353_03500at 748.554 kb on + strand, within AO353_03500at 748.554 kb on + strand, within AO353_03500at 748.555 kb on - strand, within AO353_03500at 748.555 kb on - strand, within AO353_03500at 748.563 kb on + strand, within AO353_03500at 748.563 kb on + strand, within AO353_03500at 748.564 kb on - strand, within AO353_03500at 749.085 kb on + strand, within AO353_03500at 749.085 kb on + strand, within AO353_03500at 749.085 kb on + strand, within AO353_03500at 749.086 kb on - strand, within AO353_03500at 749.086 kb on - strand, within AO353_03500at 749.086 kb on - strand, within AO353_03500at 749.086 kb on - strand, within AO353_03500at 749.201 kb on + strand, within AO353_03500at 749.202 kb on - strand, within AO353_03500at 749.202 kb on - strand, within AO353_03500at 749.202 kb on - strand, within AO353_03500

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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746,895 + AO353_03490 0.70 +1.4
746,896 - AO353_03490 0.70 -2.1
746,962 + AO353_03490 0.74 -1.6
746,970 + AO353_03490 0.75 +2.7
746,970 + AO353_03490 0.75 -0.5
746,970 + AO353_03490 0.75 -1.6
747,033 + AO353_03490 0.79 +1.5
747,243 + -0.1
747,244 - +0.7
747,244 - +0.9
747,252 + +2.4
747,252 + -0.1
747,252 + -1.1
747,252 + +1.7
747,252 + -1.6
747,253 - +0.9
747,253 - -1.5
747,324 + -2.1
747,324 + -2.6
747,325 - -2.1
747,418 + -2.1
747,437 + -0.1
747,437 + -0.1
747,437 + -2.9
747,437 + -1.6
747,438 - -0.1
747,438 - -1.1
747,438 - -0.4
747,438 - -0.3
747,600 - -2.1
747,631 - -0.1
747,668 + -1.1
747,710 - -2.6
747,751 + -1.1
747,752 - -0.1
747,752 - +2.1
747,832 + -2.6
747,833 - -3.2
747,833 - +1.4
747,861 - -0.8
747,958 + AO353_03495 0.30 -1.6
747,959 - AO353_03495 0.30 -1.1
747,981 + AO353_03495 0.36 -1.1
748,038 + AO353_03495 0.51 -0.1
748,038 + AO353_03495 0.51 +0.5
748,038 + AO353_03495 0.51 -0.6
748,038 + AO353_03495 0.51 +0.2
748,038 + AO353_03495 0.51 +0.0
748,039 - AO353_03495 0.51 -2.9
748,039 - AO353_03495 0.51 +1.7
748,039 - AO353_03495 0.51 +1.7
748,039 - AO353_03495 0.51 -0.1
748,039 - AO353_03495 0.51 +0.4
748,039 - AO353_03495 0.51 +0.5
748,039 - AO353_03495 0.51 -1.6
748,192 - +0.4
748,246 + +1.1
748,246 + -2.1
748,246 + +1.4
748,246 + +0.2
748,246 + +1.3
748,247 - -0.1
748,247 - -2.1
748,247 - +0.9
748,247 - -1.4
748,252 + -1.6
748,252 + -2.1
748,252 + -1.1
748,252 + -1.6
748,252 + +4.1
748,252 + +2.3
748,253 - +0.7
748,479 + -0.1
748,479 + -1.4
748,480 - -1.6
748,480 - +1.9
748,480 - -2.3
748,480 - +0.1
748,480 - +0.7
748,480 - +0.7
748,480 - -0.1
748,480 - -2.1
748,494 + -1.6
748,494 + +1.7
748,494 + -1.8
748,495 - -2.1
748,497 + -0.1
748,497 + -2.1
748,497 + +1.5
748,497 + -2.1
748,497 + +1.9
748,497 + +1.2
748,497 + -0.8
748,498 - +0.5
748,498 - +0.7
748,498 - +0.9
748,498 - -2.6
748,498 - +0.9
748,498 - -1.8
748,498 - -1.5
748,508 + -0.5
748,554 + AO353_03500 0.11 -1.4
748,554 + AO353_03500 0.11 -2.4
748,554 + AO353_03500 0.11 -1.6
748,555 - AO353_03500 0.11 -0.5
748,555 - AO353_03500 0.11 +2.5
748,563 + AO353_03500 0.11 -1.6
748,563 + AO353_03500 0.11 -2.1
748,564 - AO353_03500 0.11 +1.3
749,085 + AO353_03500 0.30 -2.4
749,085 + AO353_03500 0.30 -1.1
749,085 + AO353_03500 0.30 +1.9
749,086 - AO353_03500 0.30 -2.1
749,086 - AO353_03500 0.30 +1.7
749,086 - AO353_03500 0.30 +1.4
749,086 - AO353_03500 0.30 -1.9
749,201 + AO353_03500 0.34 -0.1
749,202 - AO353_03500 0.34 -1.1
749,202 - AO353_03500 0.34 +1.9
749,202 - AO353_03500 0.34 -2.1

Or see this region's nucleotide sequence