Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03100

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03095 and AO353_03100 are separated by 94 nucleotidesAO353_03100 and AO353_03105 are separated by 30 nucleotidesAO353_03105 and AO353_03110 are separated by 83 nucleotides AO353_03095: AO353_03095 - hypothetical protein, at 664,312 to 665,271 _03095 AO353_03100: AO353_03100 - XRE family transcriptional regulator, at 665,366 to 665,683 _03100 AO353_03105: AO353_03105 - XRE family transcriptional regulator, at 665,714 to 666,034 _03105 AO353_03110: AO353_03110 - hydrolase, at 666,118 to 667,173 _03110 Position (kb) 665 666Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 664.504 kb on + strand, within AO353_03095at 664.504 kb on + strand, within AO353_03095at 664.504 kb on + strand, within AO353_03095at 664.504 kb on + strand, within AO353_03095at 664.504 kb on + strand, within AO353_03095at 664.504 kb on + strand, within AO353_03095at 664.504 kb on + strand, within AO353_03095at 664.504 kb on + strand, within AO353_03095at 664.504 kb on + strand, within AO353_03095at 664.505 kb on - strand, within AO353_03095at 664.505 kb on - strand, within AO353_03095at 664.505 kb on - strand, within AO353_03095at 664.505 kb on - strand, within AO353_03095at 664.505 kb on - strand, within AO353_03095at 664.505 kb on - strand, within AO353_03095at 664.505 kb on - strand, within AO353_03095at 664.549 kb on - strand, within AO353_03095at 664.564 kb on + strand, within AO353_03095at 664.564 kb on + strand, within AO353_03095at 664.564 kb on + strand, within AO353_03095at 664.564 kb on + strand, within AO353_03095at 664.565 kb on - strand, within AO353_03095at 664.565 kb on - strand, within AO353_03095at 664.660 kb on + strand, within AO353_03095at 664.660 kb on + strand, within AO353_03095at 664.660 kb on + strand, within AO353_03095at 664.660 kb on + strand, within AO353_03095at 664.660 kb on + strand, within AO353_03095at 664.660 kb on + strand, within AO353_03095at 664.660 kb on + strand, within AO353_03095at 664.661 kb on - strand, within AO353_03095at 664.661 kb on - strand, within AO353_03095at 664.661 kb on - strand, within AO353_03095at 664.661 kb on - strand, within AO353_03095at 664.661 kb on - strand, within AO353_03095at 664.661 kb on - strand, within AO353_03095at 664.661 kb on - strand, within AO353_03095at 664.661 kb on - strand, within AO353_03095at 664.879 kb on + strand, within AO353_03095at 664.879 kb on + strand, within AO353_03095at 664.879 kb on + strand, within AO353_03095at 664.880 kb on - strand, within AO353_03095at 664.880 kb on - strand, within AO353_03095at 664.880 kb on - strand, within AO353_03095at 664.933 kb on + strand, within AO353_03095at 664.934 kb on - strand, within AO353_03095at 664.934 kb on - strand, within AO353_03095at 664.934 kb on - strand, within AO353_03095at 664.934 kb on - strand, within AO353_03095at 664.963 kb on + strand, within AO353_03095at 664.963 kb on + strand, within AO353_03095at 664.963 kb on + strand, within AO353_03095at 664.963 kb on + strand, within AO353_03095at 664.963 kb on + strand, within AO353_03095at 664.964 kb on - strand, within AO353_03095at 664.964 kb on - strand, within AO353_03095at 664.964 kb on - strand, within AO353_03095at 664.964 kb on - strand, within AO353_03095at 665.020 kb on + strand, within AO353_03095at 665.021 kb on - strand, within AO353_03095at 665.035 kb on + strand, within AO353_03095at 665.035 kb on + strand, within AO353_03095at 665.036 kb on - strand, within AO353_03095at 665.036 kb on - strand, within AO353_03095at 665.036 kb on - strand, within AO353_03095at 665.062 kb on + strand, within AO353_03095at 665.093 kb on + strand, within AO353_03095at 665.093 kb on + strand, within AO353_03095at 665.093 kb on + strand, within AO353_03095at 665.093 kb on + strand, within AO353_03095at 665.094 kb on - strand, within AO353_03095at 665.094 kb on - strand, within AO353_03095at 665.094 kb on - strand, within AO353_03095at 665.125 kb on + strand, within AO353_03095at 665.125 kb on + strand, within AO353_03095at 665.125 kb on + strand, within AO353_03095at 665.125 kb on + strand, within AO353_03095at 665.125 kb on + strand, within AO353_03095at 665.126 kb on - strand, within AO353_03095at 665.126 kb on - strand, within AO353_03095at 665.126 kb on - strand, within AO353_03095at 665.126 kb on - strand, within AO353_03095at 665.126 kb on - strand, within AO353_03095at 665.126 kb on - strand, within AO353_03095at 665.137 kb on + strand, within AO353_03095at 665.137 kb on + strand, within AO353_03095at 665.137 kb on + strand, within AO353_03095at 665.137 kb on + strand, within AO353_03095at 665.137 kb on + strand, within AO353_03095at 665.137 kb on + strand, within AO353_03095at 665.137 kb on + strand, within AO353_03095at 665.137 kb on + strand, within AO353_03095at 665.137 kb on + strand, within AO353_03095at 665.137 kb on + strand, within AO353_03095at 665.137 kb on + strand, within AO353_03095at 665.137 kb on + strand, within AO353_03095at 665.138 kb on - strand, within AO353_03095at 665.138 kb on - strand, within AO353_03095at 665.138 kb on - strand, within AO353_03095at 665.138 kb on - strand, within AO353_03095at 665.138 kb on - strand, within AO353_03095at 665.138 kb on - strand, within AO353_03095at 665.238 kb on + strandat 665.238 kb on + strandat 665.238 kb on + strandat 665.269 kb on + strandat 665.269 kb on + strandat 665.270 kb on - strandat 665.270 kb on - strandat 665.270 kb on - strandat 665.270 kb on - strandat 665.270 kb on - strandat 665.340 kb on - strandat 665.340 kb on - strandat 665.495 kb on - strand, within AO353_03100at 665.565 kb on - strand, within AO353_03100at 665.639 kb on - strand, within AO353_03100at 665.697 kb on - strandat 665.698 kb on + strandat 665.699 kb on - strandat 665.699 kb on - strandat 665.709 kb on + strandat 665.709 kb on + strandat 665.710 kb on - strandat 665.710 kb on - strandat 665.744 kb on - strandat 665.748 kb on - strand, within AO353_03105at 665.748 kb on - strand, within AO353_03105at 665.748 kb on - strand, within AO353_03105at 665.748 kb on - strand, within AO353_03105at 665.748 kb on - strand, within AO353_03105at 665.757 kb on + strand, within AO353_03105at 665.757 kb on + strand, within AO353_03105at 665.757 kb on + strand, within AO353_03105at 665.788 kb on + strand, within AO353_03105at 665.789 kb on - strand, within AO353_03105at 665.789 kb on - strand, within AO353_03105at 665.823 kb on + strand, within AO353_03105at 665.823 kb on + strand, within AO353_03105at 665.823 kb on + strand, within AO353_03105at 665.824 kb on - strand, within AO353_03105at 665.824 kb on - strand, within AO353_03105at 665.967 kb on + strand, within AO353_03105at 665.967 kb on + strand, within AO353_03105at 665.967 kb on + strand, within AO353_03105at 665.967 kb on + strand, within AO353_03105at 665.967 kb on + strand, within AO353_03105at 665.967 kb on + strand, within AO353_03105at 665.968 kb on - strand, within AO353_03105at 665.968 kb on - strand, within AO353_03105at 665.968 kb on - strand, within AO353_03105at 665.968 kb on - strand, within AO353_03105at 665.968 kb on - strand, within AO353_03105at 665.968 kb on - strand, within AO353_03105at 665.968 kb on - strand, within AO353_03105at 666.035 kb on + strandat 666.074 kb on + strandat 666.075 kb on - strandat 666.105 kb on + strandat 666.106 kb on - strandat 666.106 kb on - strandat 666.106 kb on - strandat 666.111 kb on + strandat 666.111 kb on + strandat 666.111 kb on + strandat 666.111 kb on + strandat 666.111 kb on + strandat 666.111 kb on + strandat 666.111 kb on + strandat 666.111 kb on + strandat 666.111 kb on + strandat 666.111 kb on + strandat 666.112 kb on - strandat 666.112 kb on - strandat 666.112 kb on - strandat 666.112 kb on - strandat 666.112 kb on - strandat 666.112 kb on - strandat 666.112 kb on - strandat 666.112 kb on - strandat 666.112 kb on - strandat 666.112 kb on - strandat 666.112 kb on - strandat 666.119 kb on + strandat 666.120 kb on - strandat 666.120 kb on - strandat 666.120 kb on - strandat 666.123 kb on + strandat 666.123 kb on + strandat 666.123 kb on + strandat 666.124 kb on - strandat 666.124 kb on - strandat 666.124 kb on - strandat 666.124 kb on - strandat 666.124 kb on - strandat 666.124 kb on - strandat 666.124 kb on - strandat 666.404 kb on + strand, within AO353_03110at 666.405 kb on - strand, within AO353_03110at 666.405 kb on - strand, within AO353_03110at 666.477 kb on - strand, within AO353_03110

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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664,504 + AO353_03095 0.20 +3.6
664,504 + AO353_03095 0.20 -0.1
664,504 + AO353_03095 0.20 -0.8
664,504 + AO353_03095 0.20 -2.1
664,504 + AO353_03095 0.20 +1.0
664,504 + AO353_03095 0.20 -1.6
664,504 + AO353_03095 0.20 +1.4
664,504 + AO353_03095 0.20 +0.7
664,504 + AO353_03095 0.20 -1.1
664,505 - AO353_03095 0.20 -2.1
664,505 - AO353_03095 0.20 -1.1
664,505 - AO353_03095 0.20 -2.1
664,505 - AO353_03095 0.20 +0.9
664,505 - AO353_03095 0.20 -1.1
664,505 - AO353_03095 0.20 -1.6
664,505 - AO353_03095 0.20 -1.1
664,549 - AO353_03095 0.25 -0.9
664,564 + AO353_03095 0.26 -1.6
664,564 + AO353_03095 0.26 -2.1
664,564 + AO353_03095 0.26 -1.6
664,564 + AO353_03095 0.26 -3.1
664,565 - AO353_03095 0.26 -1.1
664,565 - AO353_03095 0.26 +0.5
664,660 + AO353_03095 0.36 -1.1
664,660 + AO353_03095 0.36 -0.4
664,660 + AO353_03095 0.36 +3.1
664,660 + AO353_03095 0.36 -1.1
664,660 + AO353_03095 0.36 -1.6
664,660 + AO353_03095 0.36 -2.9
664,660 + AO353_03095 0.36 +0.7
664,661 - AO353_03095 0.36 +0.2
664,661 - AO353_03095 0.36 +1.7
664,661 - AO353_03095 0.36 -0.6
664,661 - AO353_03095 0.36 -1.1
664,661 - AO353_03095 0.36 -1.1
664,661 - AO353_03095 0.36 +2.1
664,661 - AO353_03095 0.36 -2.4
664,661 - AO353_03095 0.36 +1.6
664,879 + AO353_03095 0.59 +0.1
664,879 + AO353_03095 0.59 -0.1
664,879 + AO353_03095 0.59 -1.4
664,880 - AO353_03095 0.59 -0.1
664,880 - AO353_03095 0.59 -1.1
664,880 - AO353_03095 0.59 -0.1
664,933 + AO353_03095 0.65 +2.9
664,934 - AO353_03095 0.65 +0.9
664,934 - AO353_03095 0.65 -0.7
664,934 - AO353_03095 0.65 -0.1
664,934 - AO353_03095 0.65 -1.6
664,963 + AO353_03095 0.68 -0.1
664,963 + AO353_03095 0.68 +0.6
664,963 + AO353_03095 0.68 -1.1
664,963 + AO353_03095 0.68 -0.5
664,963 + AO353_03095 0.68 +0.7
664,964 - AO353_03095 0.68 -0.1
664,964 - AO353_03095 0.68 -1.1
664,964 - AO353_03095 0.68 -1.6
664,964 - AO353_03095 0.68 -0.5
665,020 + AO353_03095 0.74 -1.1
665,021 - AO353_03095 0.74 -1.6
665,035 + AO353_03095 0.75 -1.3
665,035 + AO353_03095 0.75 -3.2
665,036 - AO353_03095 0.75 -2.6
665,036 - AO353_03095 0.75 -3.1
665,036 - AO353_03095 0.75 -1.1
665,062 + AO353_03095 0.78 -1.8
665,093 + AO353_03095 0.81 +2.0
665,093 + AO353_03095 0.81 +0.4
665,093 + AO353_03095 0.81 -0.1
665,093 + AO353_03095 0.81 +1.5
665,094 - AO353_03095 0.81 -1.3
665,094 - AO353_03095 0.81 -0.1
665,094 - AO353_03095 0.81 +3.3
665,125 + AO353_03095 0.85 -0.1
665,125 + AO353_03095 0.85 +0.7
665,125 + AO353_03095 0.85 -0.2
665,125 + AO353_03095 0.85 -1.1
665,125 + AO353_03095 0.85 -1.1
665,126 - AO353_03095 0.85 -0.1
665,126 - AO353_03095 0.85 -1.4
665,126 - AO353_03095 0.85 +1.8
665,126 - AO353_03095 0.85 +0.9
665,126 - AO353_03095 0.85 +1.0
665,126 - AO353_03095 0.85 -3.1
665,137 + AO353_03095 0.86 -0.8
665,137 + AO353_03095 0.86 -1.1
665,137 + AO353_03095 0.86 +0.2
665,137 + AO353_03095 0.86 -0.1
665,137 + AO353_03095 0.86 +2.3
665,137 + AO353_03095 0.86 -2.4
665,137 + AO353_03095 0.86 +0.1
665,137 + AO353_03095 0.86 -0.6
665,137 + AO353_03095 0.86 -0.4
665,137 + AO353_03095 0.86 +3.1
665,137 + AO353_03095 0.86 +1.9
665,137 + AO353_03095 0.86 -1.1
665,138 - AO353_03095 0.86 -2.1
665,138 - AO353_03095 0.86 -0.1
665,138 - AO353_03095 0.86 -0.9
665,138 - AO353_03095 0.86 -2.6
665,138 - AO353_03095 0.86 -2.1
665,138 - AO353_03095 0.86 -1.6
665,238 + -2.6
665,238 + -2.1
665,238 + -1.1
665,269 + +0.4
665,269 + -0.1
665,270 - -0.5
665,270 - -1.6
665,270 - +1.7
665,270 - +0.9
665,270 - -0.1
665,340 - -1.1
665,340 - -1.1
665,495 - AO353_03100 0.41 -1.6
665,565 - AO353_03100 0.63 -1.1
665,639 - AO353_03100 0.86 -0.1
665,697 - +2.4
665,698 + +1.3
665,699 - +0.4
665,699 - +0.3
665,709 + -1.1
665,709 + -1.2
665,710 - -2.6
665,710 - +0.3
665,744 - +1.2
665,748 - AO353_03105 0.11 -0.1
665,748 - AO353_03105 0.11 -0.1
665,748 - AO353_03105 0.11 -1.8
665,748 - AO353_03105 0.11 -2.4
665,748 - AO353_03105 0.11 +0.7
665,757 + AO353_03105 0.13 -2.4
665,757 + AO353_03105 0.13 +0.5
665,757 + AO353_03105 0.13 -2.6
665,788 + AO353_03105 0.23 -0.6
665,789 - AO353_03105 0.23 +0.6
665,789 - AO353_03105 0.23 -3.1
665,823 + AO353_03105 0.34 -1.1
665,823 + AO353_03105 0.34 -0.1
665,823 + AO353_03105 0.34 -1.1
665,824 - AO353_03105 0.34 -3.6
665,824 - AO353_03105 0.34 -1.6
665,967 + AO353_03105 0.79 -2.1
665,967 + AO353_03105 0.79 -2.1
665,967 + AO353_03105 0.79 -1.1
665,967 + AO353_03105 0.79 +1.5
665,967 + AO353_03105 0.79 -2.1
665,967 + AO353_03105 0.79 -1.6
665,968 - AO353_03105 0.79 -2.6
665,968 - AO353_03105 0.79 +3.5
665,968 - AO353_03105 0.79 -1.1
665,968 - AO353_03105 0.79 -1.6
665,968 - AO353_03105 0.79 +0.7
665,968 - AO353_03105 0.79 -1.6
665,968 - AO353_03105 0.79 -0.9
666,035 + -2.4
666,074 + -2.4
666,075 - +0.4
666,105 + +0.4
666,106 - -1.1
666,106 - -1.6
666,106 - -1.6
666,111 + -0.1
666,111 + -1.1
666,111 + -1.6
666,111 + -0.5
666,111 + -2.1
666,111 + +0.4
666,111 + -2.4
666,111 + -1.6
666,111 + -1.4
666,111 + -2.1
666,112 - -2.4
666,112 - +0.9
666,112 - -0.5
666,112 - -1.1
666,112 - +1.9
666,112 - -1.1
666,112 - +0.9
666,112 - -0.1
666,112 - -2.1
666,112 - -1.6
666,112 - -0.6
666,119 + -0.1
666,120 - -2.1
666,120 - +2.1
666,120 - +0.9
666,123 + -3.1
666,123 + -1.1
666,123 + -2.1
666,124 - -1.1
666,124 - -0.1
666,124 - -2.1
666,124 - -1.1
666,124 - -1.6
666,124 - -0.1
666,124 - -1.1
666,404 + AO353_03110 0.27 -0.1
666,405 - AO353_03110 0.27 -0.1
666,405 - AO353_03110 0.27 -1.6
666,477 - AO353_03110 0.34 +1.1

Or see this region's nucleotide sequence