Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02455 and AO353_02460 are separated by 229 nucleotides AO353_02460 and AO353_02465 are separated by 0 nucleotides AO353_02465 and AO353_02470 overlap by 4 nucleotides AO353_02470 and AO353_02475 are separated by 115 nucleotides
AO353_02455: AO353_02455 - type IV secretion protein Rhs, at 523,787 to 528,595
_02455
AO353_02460: AO353_02460 - hypothetical protein, at 528,825 to 529,226
_02460
AO353_02465: AO353_02465 - hypothetical protein, at 529,227 to 529,598
_02465
AO353_02470: AO353_02470 - Cro/Cl family transcriptional regulator, at 529,595 to 529,936
_02470
AO353_02475: AO353_02475 - hypothetical protein, at 530,052 to 530,507
_02475
Position (kb) 529
530 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 528.468 kb on + strand at 528.469 kb on - strand at 528.469 kb on - strand at 528.469 kb on - strand at 528.681 kb on + strand at 528.681 kb on + strand at 528.681 kb on + strand at 528.681 kb on + strand at 528.681 kb on + strand at 528.681 kb on + strand at 528.681 kb on + strand at 528.681 kb on + strand at 528.682 kb on - strand at 528.682 kb on - strand at 528.682 kb on - strand at 528.682 kb on - strand at 528.682 kb on - strand at 528.686 kb on + strand at 528.686 kb on + strand at 528.686 kb on + strand at 528.687 kb on - strand at 528.687 kb on - strand at 528.687 kb on - strand at 528.748 kb on + strand at 528.748 kb on + strand at 528.749 kb on - strand at 528.749 kb on - strand at 528.749 kb on - strand at 528.749 kb on - strand at 528.753 kb on + strand at 528.753 kb on + strand at 528.753 kb on + strand at 528.754 kb on - strand at 528.754 kb on - strand at 528.754 kb on - strand at 528.765 kb on + strand at 528.766 kb on - strand at 528.766 kb on - strand at 528.970 kb on + strand, within AO353_02460 at 529.017 kb on + strand, within AO353_02460 at 529.018 kb on - strand, within AO353_02460 at 529.018 kb on - strand, within AO353_02460 at 529.018 kb on - strand, within AO353_02460 at 529.018 kb on - strand, within AO353_02460 at 529.018 kb on - strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.072 kb on + strand, within AO353_02460 at 529.073 kb on - strand, within AO353_02460 at 529.073 kb on - strand, within AO353_02460 at 529.073 kb on - strand, within AO353_02460 at 529.073 kb on - strand, within AO353_02460 at 529.073 kb on - strand, within AO353_02460 at 529.195 kb on + strand at 529.195 kb on + strand at 529.255 kb on + strand at 529.256 kb on - strand at 529.513 kb on + strand, within AO353_02465 at 529.514 kb on - strand, within AO353_02465 at 529.514 kb on - strand, within AO353_02465 at 529.514 kb on - strand, within AO353_02465 at 529.590 kb on + strand at 529.591 kb on - strand at 529.695 kb on + strand, within AO353_02470 at 529.695 kb on + strand, within AO353_02470 at 529.696 kb on - strand, within AO353_02470 at 529.696 kb on - strand, within AO353_02470 at 529.766 kb on + strand, within AO353_02470 at 529.766 kb on + strand at 529.766 kb on + strand, within AO353_02470 at 529.767 kb on - strand, within AO353_02470 at 529.767 kb on - strand, within AO353_02470 at 529.767 kb on - strand, within AO353_02470 at 529.767 kb on - strand, within AO353_02470 at 529.767 kb on - strand, within AO353_02470 at 529.767 kb on - strand, within AO353_02470 at 529.872 kb on + strand, within AO353_02470 at 529.886 kb on + strand, within AO353_02470 at 529.886 kb on + strand at 529.886 kb on + strand, within AO353_02470 at 529.886 kb on + strand at 529.886 kb on + strand, within AO353_02470 at 529.886 kb on + strand, within AO353_02470 at 529.887 kb on - strand, within AO353_02470 at 529.896 kb on + strand, within AO353_02470 at 529.897 kb on - strand, within AO353_02470 at 529.922 kb on + strand at 529.922 kb on + strand at 529.922 kb on + strand at 529.922 kb on + strand at 529.923 kb on - strand at 529.930 kb on + strand at 529.940 kb on + strand at 529.940 kb on + strand at 529.941 kb on - strand at 529.941 kb on - strand at 529.941 kb on - strand at 529.948 kb on - strand at 529.962 kb on + strand at 529.963 kb on - strand at 529.984 kb on - strand at 529.991 kb on + strand at 529.991 kb on + strand at 529.991 kb on + strand at 529.991 kb on + strand at 529.992 kb on - strand at 529.998 kb on - strand at 529.998 kb on - strand at 530.079 kb on + strand at 530.079 kb on + strand at 530.079 kb on + strand at 530.079 kb on + strand at 530.079 kb on + strand at 530.080 kb on - strand at 530.080 kb on - strand at 530.080 kb on - strand at 530.234 kb on + strand, within AO353_02475 at 530.234 kb on + strand, within AO353_02475 at 530.234 kb on + strand, within AO353_02475 at 530.269 kb on + strand, within AO353_02475 at 530.269 kb on + strand, within AO353_02475 at 530.269 kb on + strand, within AO353_02475 at 530.269 kb on + strand, within AO353_02475 at 530.269 kb on + strand, within AO353_02475 at 530.269 kb on + strand, within AO353_02475 at 530.270 kb on - strand, within AO353_02475 at 530.270 kb on - strand, within AO353_02475 at 530.270 kb on - strand, within AO353_02475 at 530.270 kb on - strand, within AO353_02475 at 530.270 kb on - strand, within AO353_02475 at 530.270 kb on - strand, within AO353_02475 at 530.270 kb on - strand, within AO353_02475 at 530.270 kb on - strand, within AO353_02475 at 530.290 kb on - strand, within AO353_02475 at 530.321 kb on - strand, within AO353_02475 at 530.336 kb on - strand, within AO353_02475 at 530.375 kb on + strand, within AO353_02475 at 530.376 kb on - strand, within AO353_02475 at 530.430 kb on + strand, within AO353_02475 at 530.430 kb on + strand, within AO353_02475 at 530.475 kb on + strand at 530.592 kb on + strand at 530.593 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 528,468 + -0.1 528,469 - -3.0 528,469 - +0.2 528,469 - +3.7 528,681 + +0.2 528,681 + +4.0 528,681 + -2.5 528,681 + -1.1 528,681 + -2.5 528,681 + -0.7 528,681 + +2.4 528,681 + -1.7 528,682 - -0.1 528,682 - -1.1 528,682 - -0.1 528,682 - -0.6 528,682 - -1.7 528,686 + -1.7 528,686 + +3.9 528,686 + -0.5 528,687 - -1.5 528,687 - +0.4 528,687 - +3.1 528,748 + -1.7 528,748 + -0.1 528,749 - -2.1 528,749 - -2.5 528,749 - -1.7 528,749 - -2.1 528,753 + -3.3 528,753 + +0.9 528,753 + +0.6 528,754 - -3.7 528,754 - -0.1 528,754 - -0.1 528,765 + -1.7 528,766 - -0.1 528,766 - +0.6 528,970 + AO353_02460 0.36 -1.6 529,017 + AO353_02460 0.48 -1.4 529,018 - AO353_02460 0.48 -1.1 529,018 - AO353_02460 0.48 -4.0 529,018 - AO353_02460 0.48 -1.1 529,018 - AO353_02460 0.48 -1.7 529,018 - AO353_02460 0.48 +1.4 529,072 + AO353_02460 0.61 +0.3 529,072 + AO353_02460 0.61 -1.7 529,072 + AO353_02460 0.61 -0.7 529,072 + AO353_02460 0.61 -2.1 529,072 + AO353_02460 0.61 -1.1 529,072 + AO353_02460 0.61 -0.1 529,072 + AO353_02460 0.61 -0.1 529,072 + AO353_02460 0.61 -2.1 529,073 - AO353_02460 0.62 +1.2 529,073 - AO353_02460 0.62 +0.6 529,073 - AO353_02460 0.62 -1.7 529,073 - AO353_02460 0.62 -3.1 529,073 - AO353_02460 0.62 -0.6 529,195 + -2.1 529,195 + -1.7 529,255 + -0.5 529,256 - -1.1 529,513 + AO353_02465 0.77 +0.4 529,514 - AO353_02465 0.77 -3.1 529,514 - AO353_02465 0.77 -0.1 529,514 - AO353_02465 0.77 -2.9 529,590 + +2.0 529,591 - -2.1 529,695 + AO353_02470 0.29 +0.2 529,695 + AO353_02470 0.29 +0.7 529,696 - AO353_02470 0.30 +2.2 529,696 - AO353_02470 0.30 -1.1 529,766 + AO353_02470 0.50 -1.1 529,766 + -1.1 529,766 + AO353_02470 0.50 -1.1 529,767 - AO353_02470 0.50 +1.4 529,767 - AO353_02470 0.50 +0.9 529,767 - AO353_02470 0.50 -0.9 529,767 - AO353_02470 0.50 -0.1 529,767 - AO353_02470 0.50 -1.1 529,767 - AO353_02470 0.50 -2.1 529,872 + AO353_02470 0.81 +2.7 529,886 + AO353_02470 0.85 -1.1 529,886 + -0.7 529,886 + AO353_02470 0.85 +0.7 529,886 + -0.1 529,886 + AO353_02470 0.85 -0.1 529,886 + AO353_02470 0.85 -0.1 529,887 - AO353_02470 0.85 -1.1 529,896 + AO353_02470 0.88 +0.9 529,897 - AO353_02470 0.88 -2.7 529,922 + -1.7 529,922 + -1.1 529,922 + -0.4 529,922 + +0.1 529,923 - +0.9 529,930 + -0.1 529,940 + +0.9 529,940 + -0.7 529,941 - -0.1 529,941 - -1.1 529,941 - -1.1 529,948 - +1.9 529,962 + -2.5 529,963 - -1.7 529,984 - -1.9 529,991 + -0.1 529,991 + -0.7 529,991 + +0.7 529,991 + -2.7 529,992 - -0.5 529,998 - +3.3 529,998 - -1.1 530,079 + -1.7 530,079 + +1.8 530,079 + +2.4 530,079 + +0.9 530,079 + -0.1 530,080 - +2.2 530,080 - -1.5 530,080 - +1.3 530,234 + AO353_02475 0.40 -0.1 530,234 + AO353_02475 0.40 -1.7 530,234 + AO353_02475 0.40 -0.1 530,269 + AO353_02475 0.48 -1.7 530,269 + AO353_02475 0.48 -1.7 530,269 + AO353_02475 0.48 +2.2 530,269 + AO353_02475 0.48 -0.1 530,269 + AO353_02475 0.48 +1.8 530,269 + AO353_02475 0.48 +2.2 530,270 - AO353_02475 0.48 +2.2 530,270 - AO353_02475 0.48 -0.1 530,270 - AO353_02475 0.48 -0.1 530,270 - AO353_02475 0.48 -1.7 530,270 - AO353_02475 0.48 +0.2 530,270 - AO353_02475 0.48 -0.5 530,270 - AO353_02475 0.48 -1.7 530,270 - AO353_02475 0.48 -2.1 530,290 - AO353_02475 0.52 -0.1 530,321 - AO353_02475 0.59 -0.2 530,336 - AO353_02475 0.62 -1.1 530,375 + AO353_02475 0.71 -1.1 530,376 - AO353_02475 0.71 -0.1 530,430 + AO353_02475 0.83 -1.7 530,430 + AO353_02475 0.83 -1.7 530,475 + +0.9 530,592 + -1.5 530,593 - +0.9
Or see this region's nucleotide sequence