Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01400

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01395 and AO353_01400 are separated by 21 nucleotidesAO353_01400 and AO353_01405 overlap by 11 nucleotides AO353_01395: AO353_01395 - peptidase S49, at 298,334 to 299,323 _01395 AO353_01400: AO353_01400 - HAD family hydrolase, at 299,345 to 300,007 _01400 AO353_01405: AO353_01405 - 23S rRNA pseudouridylate synthase, at 299,997 to 300,956 _01405 Position (kb) 299 300 301Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 298.466 kb on + strand, within AO353_01395at 298.466 kb on + strand, within AO353_01395at 298.466 kb on + strand, within AO353_01395at 298.467 kb on - strand, within AO353_01395at 298.467 kb on - strand, within AO353_01395at 298.467 kb on - strand, within AO353_01395at 298.702 kb on + strand, within AO353_01395at 298.702 kb on + strand, within AO353_01395at 298.702 kb on + strand, within AO353_01395at 298.702 kb on + strand, within AO353_01395at 298.702 kb on + strand, within AO353_01395at 298.702 kb on + strand, within AO353_01395at 298.702 kb on + strand, within AO353_01395at 298.702 kb on + strand, within AO353_01395at 298.702 kb on + strand, within AO353_01395at 298.702 kb on + strand, within AO353_01395at 298.702 kb on + strand, within AO353_01395at 298.702 kb on + strand, within AO353_01395at 298.702 kb on + strand, within AO353_01395at 298.703 kb on - strand, within AO353_01395at 298.703 kb on - strand, within AO353_01395at 298.703 kb on - strand, within AO353_01395at 298.703 kb on - strand, within AO353_01395at 298.703 kb on - strand, within AO353_01395at 298.703 kb on - strand, within AO353_01395at 298.703 kb on - strand, within AO353_01395at 298.703 kb on - strand, within AO353_01395at 298.717 kb on + strand, within AO353_01395at 298.717 kb on + strand, within AO353_01395at 298.717 kb on + strand, within AO353_01395at 298.717 kb on + strand, within AO353_01395at 298.717 kb on + strand, within AO353_01395at 298.718 kb on - strand, within AO353_01395at 298.718 kb on - strand, within AO353_01395at 298.718 kb on - strand, within AO353_01395at 298.718 kb on - strand, within AO353_01395at 298.718 kb on - strand, within AO353_01395at 298.718 kb on - strand, within AO353_01395at 298.718 kb on - strand, within AO353_01395at 298.718 kb on - strand, within AO353_01395at 298.718 kb on - strand, within AO353_01395at 298.718 kb on - strand, within AO353_01395at 298.719 kb on + strand, within AO353_01395at 298.719 kb on + strand, within AO353_01395at 298.719 kb on + strand, within AO353_01395at 298.720 kb on - strand, within AO353_01395at 298.720 kb on - strand, within AO353_01395at 298.720 kb on - strand, within AO353_01395at 298.818 kb on + strand, within AO353_01395at 298.818 kb on + strand, within AO353_01395at 298.819 kb on - strand, within AO353_01395at 298.845 kb on + strand, within AO353_01395at 298.845 kb on + strand, within AO353_01395at 298.845 kb on + strand, within AO353_01395at 298.845 kb on + strand, within AO353_01395at 298.845 kb on + strand, within AO353_01395at 298.845 kb on + strand, within AO353_01395at 298.846 kb on - strand, within AO353_01395at 298.846 kb on - strand, within AO353_01395at 298.846 kb on - strand, within AO353_01395at 298.846 kb on - strand, within AO353_01395at 298.846 kb on - strand, within AO353_01395at 298.846 kb on - strand, within AO353_01395at 298.846 kb on - strand, within AO353_01395at 298.846 kb on - strand, within AO353_01395at 298.846 kb on - strand, within AO353_01395at 298.846 kb on - strand, within AO353_01395at 298.846 kb on - strand, within AO353_01395at 298.846 kb on - strand, within AO353_01395at 298.848 kb on + strand, within AO353_01395at 298.848 kb on + strand, within AO353_01395at 298.848 kb on + strand, within AO353_01395at 298.848 kb on + strand, within AO353_01395at 298.849 kb on - strand, within AO353_01395at 298.849 kb on - strand, within AO353_01395at 298.849 kb on - strand, within AO353_01395at 298.884 kb on + strand, within AO353_01395at 298.884 kb on + strand, within AO353_01395at 298.884 kb on + strand, within AO353_01395at 298.884 kb on + strand, within AO353_01395at 298.884 kb on + strand, within AO353_01395at 298.885 kb on - strand, within AO353_01395at 298.885 kb on - strand, within AO353_01395at 298.885 kb on - strand, within AO353_01395at 298.885 kb on - strand, within AO353_01395at 298.885 kb on - strand, within AO353_01395at 298.885 kb on - strand, within AO353_01395at 298.885 kb on - strand, within AO353_01395at 298.885 kb on - strand, within AO353_01395at 298.932 kb on + strand, within AO353_01395at 298.932 kb on + strand, within AO353_01395at 298.932 kb on + strand, within AO353_01395at 298.932 kb on + strand, within AO353_01395at 298.933 kb on - strand, within AO353_01395at 298.933 kb on - strand, within AO353_01395at 298.938 kb on + strand, within AO353_01395at 298.939 kb on - strand, within AO353_01395at 299.097 kb on + strand, within AO353_01395at 299.097 kb on + strand, within AO353_01395at 299.128 kb on + strand, within AO353_01395at 299.169 kb on + strand, within AO353_01395at 299.346 kb on + strandat 299.346 kb on + strandat 299.346 kb on + strandat 299.346 kb on + strandat 299.347 kb on - strandat 299.347 kb on - strandat 299.347 kb on - strandat 299.445 kb on + strand, within AO353_01400at 299.445 kb on + strand, within AO353_01400at 299.445 kb on + strand, within AO353_01400at 299.446 kb on - strand, within AO353_01400at 299.446 kb on - strand, within AO353_01400at 299.446 kb on - strand, within AO353_01400at 299.446 kb on - strand, within AO353_01400at 299.446 kb on - strand, within AO353_01400at 299.446 kb on - strand, within AO353_01400at 299.446 kb on - strand, within AO353_01400at 299.619 kb on + strand, within AO353_01400at 299.619 kb on + strand, within AO353_01400at 299.619 kb on + strand, within AO353_01400at 299.619 kb on + strand, within AO353_01400at 299.620 kb on - strand, within AO353_01400at 299.772 kb on + strand, within AO353_01400at 299.772 kb on + strand, within AO353_01400at 299.772 kb on + strand, within AO353_01400at 299.772 kb on + strand, within AO353_01400at 299.772 kb on + strand, within AO353_01400at 299.772 kb on + strand, within AO353_01400at 299.773 kb on - strand, within AO353_01400at 299.773 kb on - strand, within AO353_01400at 299.784 kb on + strand, within AO353_01400at 299.784 kb on + strand, within AO353_01400at 299.784 kb on + strand, within AO353_01400at 299.784 kb on + strand, within AO353_01400at 299.785 kb on - strand, within AO353_01400at 299.785 kb on - strand, within AO353_01400at 299.829 kb on + strand, within AO353_01400at 299.894 kb on + strand, within AO353_01400at 299.895 kb on - strand, within AO353_01400at 299.895 kb on - strand, within AO353_01400at 299.895 kb on - strand, within AO353_01400at 299.994 kb on + strandat 299.994 kb on + strandat 299.995 kb on - strandat 299.995 kb on - strandat 300.097 kb on + strand, within AO353_01405at 300.097 kb on + strand, within AO353_01405at 300.097 kb on + strand, within AO353_01405at 300.097 kb on + strand, within AO353_01405at 300.097 kb on + strand, within AO353_01405at 300.098 kb on - strand, within AO353_01405at 300.098 kb on - strand, within AO353_01405at 300.098 kb on - strand, within AO353_01405at 300.098 kb on - strand, within AO353_01405at 300.098 kb on - strand, within AO353_01405at 300.098 kb on - strand, within AO353_01405at 300.098 kb on - strand, within AO353_01405at 300.098 kb on - strand, within AO353_01405at 300.098 kb on - strand, within AO353_01405at 300.163 kb on + strand, within AO353_01405at 300.164 kb on - strand, within AO353_01405at 300.164 kb on - strand, within AO353_01405at 300.422 kb on + strand, within AO353_01405at 300.422 kb on + strand, within AO353_01405at 300.422 kb on + strand, within AO353_01405at 300.423 kb on - strand, within AO353_01405at 300.423 kb on - strand, within AO353_01405at 300.424 kb on + strand, within AO353_01405at 300.424 kb on + strand, within AO353_01405at 300.424 kb on + strand, within AO353_01405at 300.425 kb on - strand, within AO353_01405at 300.425 kb on - strand, within AO353_01405at 300.589 kb on + strand, within AO353_01405at 300.590 kb on - strand, within AO353_01405at 300.590 kb on - strand, within AO353_01405at 300.590 kb on - strand, within AO353_01405at 300.776 kb on - strand, within AO353_01405at 300.878 kb on + strandat 300.879 kb on - strandat 300.879 kb on - strandat 300.884 kb on + strandat 300.885 kb on - strandat 300.885 kb on - strandat 300.898 kb on + strandat 300.899 kb on - strandat 300.899 kb on - strandat 300.924 kb on + strandat 300.924 kb on + strandat 300.924 kb on + strandat 300.924 kb on + strandat 300.924 kb on + strandat 300.925 kb on - strandat 300.925 kb on - strandat 300.925 kb on - strandat 300.925 kb on - strandat 300.925 kb on - strandat 300.925 kb on - strandat 300.925 kb on - strandat 300.996 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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298,466 + AO353_01395 0.13 -2.7
298,466 + AO353_01395 0.13 -0.6
298,466 + AO353_01395 0.13 +1.0
298,467 - AO353_01395 0.13 -2.2
298,467 - AO353_01395 0.13 -3.3
298,467 - AO353_01395 0.13 -2.2
298,702 + AO353_01395 0.37 -1.7
298,702 + AO353_01395 0.37 +2.5
298,702 + AO353_01395 0.37 -1.2
298,702 + AO353_01395 0.37 -1.2
298,702 + AO353_01395 0.37 -3.5
298,702 + AO353_01395 0.37 -1.2
298,702 + AO353_01395 0.37 -1.2
298,702 + AO353_01395 0.37 -0.2
298,702 + AO353_01395 0.37 +0.8
298,702 + AO353_01395 0.37 +1.3
298,702 + AO353_01395 0.37 +0.1
298,702 + AO353_01395 0.37 -3.2
298,702 + AO353_01395 0.37 -2.5
298,703 - AO353_01395 0.37 -3.3
298,703 - AO353_01395 0.37 -0.2
298,703 - AO353_01395 0.37 -2.2
298,703 - AO353_01395 0.37 -1.2
298,703 - AO353_01395 0.37 +0.9
298,703 - AO353_01395 0.37 +0.8
298,703 - AO353_01395 0.37 -1.7
298,703 - AO353_01395 0.37 -2.3
298,717 + AO353_01395 0.39 -1.2
298,717 + AO353_01395 0.39 +0.9
298,717 + AO353_01395 0.39 +0.1
298,717 + AO353_01395 0.39 +3.2
298,717 + AO353_01395 0.39 -1.5
298,718 - AO353_01395 0.39 -1.2
298,718 - AO353_01395 0.39 -2.5
298,718 - AO353_01395 0.39 -1.7
298,718 - AO353_01395 0.39 -2.5
298,718 - AO353_01395 0.39 -2.2
298,718 - AO353_01395 0.39 +1.7
298,718 - AO353_01395 0.39 -0.7
298,718 - AO353_01395 0.39 -0.6
298,718 - AO353_01395 0.39 +0.4
298,718 - AO353_01395 0.39 +2.7
298,719 + AO353_01395 0.39 -0.2
298,719 + AO353_01395 0.39 -0.2
298,719 + AO353_01395 0.39 -0.2
298,720 - AO353_01395 0.39 -0.7
298,720 - AO353_01395 0.39 -2.2
298,720 - AO353_01395 0.39 -0.2
298,818 + AO353_01395 0.49 +2.0
298,818 + AO353_01395 0.49 -1.2
298,819 - AO353_01395 0.49 -1.7
298,845 + AO353_01395 0.52 -1.4
298,845 + AO353_01395 0.52 -2.3
298,845 + AO353_01395 0.52 +0.2
298,845 + AO353_01395 0.52 -0.2
298,845 + AO353_01395 0.52 +2.7
298,845 + AO353_01395 0.52 -3.0
298,846 - AO353_01395 0.52 -1.7
298,846 - AO353_01395 0.52 -1.5
298,846 - AO353_01395 0.52 -1.2
298,846 - AO353_01395 0.52 +2.8
298,846 - AO353_01395 0.52 -0.2
298,846 - AO353_01395 0.52 +1.1
298,846 - AO353_01395 0.52 -0.2
298,846 - AO353_01395 0.52 -2.5
298,846 - AO353_01395 0.52 -0.2
298,846 - AO353_01395 0.52 -1.2
298,846 - AO353_01395 0.52 -2.2
298,846 - AO353_01395 0.52 +0.6
298,848 + AO353_01395 0.52 +1.3
298,848 + AO353_01395 0.52 +0.8
298,848 + AO353_01395 0.52 -0.3
298,848 + AO353_01395 0.52 -0.6
298,849 - AO353_01395 0.52 -0.4
298,849 - AO353_01395 0.52 -3.3
298,849 - AO353_01395 0.52 -0.2
298,884 + AO353_01395 0.56 -0.2
298,884 + AO353_01395 0.56 +0.3
298,884 + AO353_01395 0.56 -1.9
298,884 + AO353_01395 0.56 -0.5
298,884 + AO353_01395 0.56 +2.5
298,885 - AO353_01395 0.56 -0.2
298,885 - AO353_01395 0.56 +2.8
298,885 - AO353_01395 0.56 +1.4
298,885 - AO353_01395 0.56 -1.4
298,885 - AO353_01395 0.56 -1.2
298,885 - AO353_01395 0.56 -0.6
298,885 - AO353_01395 0.56 -3.0
298,885 - AO353_01395 0.56 +0.3
298,932 + AO353_01395 0.60 +0.8
298,932 + AO353_01395 0.60 +0.4
298,932 + AO353_01395 0.60 -2.2
298,932 + AO353_01395 0.60 -0.2
298,933 - AO353_01395 0.61 -1.6
298,933 - AO353_01395 0.61 -1.2
298,938 + AO353_01395 0.61 -0.2
298,939 - AO353_01395 0.61 -2.7
299,097 + AO353_01395 0.77 -3.0
299,097 + AO353_01395 0.77 -0.2
299,128 + AO353_01395 0.80 +2.4
299,169 + AO353_01395 0.84 +0.8
299,346 + -1.2
299,346 + +0.8
299,346 + -2.2
299,346 + -1.2
299,347 - +2.2
299,347 - +2.4
299,347 - -0.2
299,445 + AO353_01400 0.15 +1.4
299,445 + AO353_01400 0.15 -0.2
299,445 + AO353_01400 0.15 -2.7
299,446 - AO353_01400 0.15 -0.2
299,446 - AO353_01400 0.15 +1.8
299,446 - AO353_01400 0.15 -0.2
299,446 - AO353_01400 0.15 -2.5
299,446 - AO353_01400 0.15 +2.4
299,446 - AO353_01400 0.15 -0.2
299,446 - AO353_01400 0.15 -1.7
299,619 + AO353_01400 0.41 -2.5
299,619 + AO353_01400 0.41 -1.7
299,619 + AO353_01400 0.41 -0.9
299,619 + AO353_01400 0.41 -0.6
299,620 - AO353_01400 0.41 -0.2
299,772 + AO353_01400 0.64 -1.2
299,772 + AO353_01400 0.64 -0.3
299,772 + AO353_01400 0.64 +0.2
299,772 + AO353_01400 0.64 +2.2
299,772 + AO353_01400 0.64 +2.0
299,772 + AO353_01400 0.64 -1.2
299,773 - AO353_01400 0.65 -1.2
299,773 - AO353_01400 0.65 +1.2
299,784 + AO353_01400 0.66 +1.7
299,784 + AO353_01400 0.66 -1.2
299,784 + AO353_01400 0.66 -3.0
299,784 + AO353_01400 0.66 -0.2
299,785 - AO353_01400 0.66 -2.5
299,785 - AO353_01400 0.66 +1.2
299,829 + AO353_01400 0.73 -1.6
299,894 + AO353_01400 0.83 -0.6
299,895 - AO353_01400 0.83 +3.0
299,895 - AO353_01400 0.83 +0.1
299,895 - AO353_01400 0.83 +1.0
299,994 + -1.2
299,994 + -2.2
299,995 - -1.2
299,995 - -0.4
300,097 + AO353_01405 0.10 +0.1
300,097 + AO353_01405 0.10 -0.2
300,097 + AO353_01405 0.10 -1.7
300,097 + AO353_01405 0.10 -1.7
300,097 + AO353_01405 0.10 -1.7
300,098 - AO353_01405 0.11 -1.2
300,098 - AO353_01405 0.11 -0.2
300,098 - AO353_01405 0.11 -1.7
300,098 - AO353_01405 0.11 -2.5
300,098 - AO353_01405 0.11 -1.2
300,098 - AO353_01405 0.11 -1.2
300,098 - AO353_01405 0.11 -3.3
300,098 - AO353_01405 0.11 -0.7
300,098 - AO353_01405 0.11 -3.6
300,163 + AO353_01405 0.17 -1.7
300,164 - AO353_01405 0.17 -1.7
300,164 - AO353_01405 0.17 -1.7
300,422 + AO353_01405 0.44 -1.2
300,422 + AO353_01405 0.44 -1.2
300,422 + AO353_01405 0.44 -2.5
300,423 - AO353_01405 0.44 -2.2
300,423 - AO353_01405 0.44 -2.2
300,424 + AO353_01405 0.44 -1.2
300,424 + AO353_01405 0.44 +2.4
300,424 + AO353_01405 0.44 -1.2
300,425 - AO353_01405 0.45 -3.3
300,425 - AO353_01405 0.45 -0.2
300,589 + AO353_01405 0.62 -1.7
300,590 - AO353_01405 0.62 -3.0
300,590 - AO353_01405 0.62 -0.2
300,590 - AO353_01405 0.62 -1.7
300,776 - AO353_01405 0.81 -2.7
300,878 + -1.7
300,879 - -0.7
300,879 - -1.2
300,884 + -1.2
300,885 - -2.2
300,885 - -2.2
300,898 + -0.2
300,899 - -1.7
300,899 - -1.7
300,924 + -2.2
300,924 + -2.2
300,924 + +2.3
300,924 + -1.7
300,924 + -0.2
300,925 - -2.2
300,925 - -1.7
300,925 - +0.6
300,925 - +1.2
300,925 - -2.5
300,925 - -1.7
300,925 - -2.5
300,996 + -3.5

Or see this region's nucleotide sequence