Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00685

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00675 and AO353_00680 are separated by 322 nucleotidesAO353_00680 and AO353_00685 are separated by 67 nucleotidesAO353_00685 and AO353_00690 are separated by 146 nucleotidesAO353_00690 and AO353_00695 are separated by 3 nucleotides AO353_00675: AO353_00675 - recombination protein RecR, at 142,994 to 143,596 _00675 AO353_00680: AO353_00680 - nucleoid-associated protein, at 143,919 to 144,257 _00680 AO353_00685: AO353_00685 - DNA polymerase III subunit gamma/tau, at 144,325 to 146,433 _00685 AO353_00690: AO353_00690 - amino acid ABC transporter substrate-binding protein, at 146,580 to 147,338 _00690 AO353_00695: AO353_00695 - diguanylate cyclase, at 147,342 to 149,042 _00695 Position (kb) 144 145 146 147Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 143.354 kb on + strand, within AO353_00675at 143.354 kb on + strand, within AO353_00675at 143.354 kb on + strand, within AO353_00675at 143.354 kb on + strand, within AO353_00675at 143.354 kb on + strand, within AO353_00675at 143.355 kb on - strand, within AO353_00675at 143.355 kb on - strand, within AO353_00675at 143.355 kb on - strand, within AO353_00675at 143.355 kb on - strand, within AO353_00675at 143.515 kb on + strand, within AO353_00675at 143.516 kb on - strand, within AO353_00675at 143.614 kb on + strandat 143.614 kb on + strandat 143.614 kb on + strandat 143.614 kb on + strandat 143.615 kb on - strandat 143.615 kb on - strandat 143.615 kb on - strandat 143.632 kb on + strandat 143.633 kb on - strandat 143.633 kb on - strandat 143.634 kb on + strandat 143.634 kb on + strandat 143.748 kb on + strandat 143.748 kb on + strandat 143.749 kb on - strandat 143.780 kb on - strandat 143.896 kb on - strandat 144.141 kb on - strand, within AO353_00680at 144.276 kb on - strandat 144.276 kb on - strandat 144.276 kb on - strandat 144.276 kb on - strandat 144.324 kb on - strandat 144.324 kb on - strandat 144.324 kb on - strandat 144.324 kb on - strandat 144.326 kb on + strandat 146.512 kb on + strandat 146.521 kb on + strandat 146.529 kb on + strandat 146.530 kb on - strandat 146.579 kb on + strandat 146.721 kb on + strand, within AO353_00690at 146.721 kb on + strand, within AO353_00690at 146.721 kb on + strand, within AO353_00690at 146.836 kb on - strand, within AO353_00690at 146.874 kb on + strand, within AO353_00690at 146.874 kb on + strand, within AO353_00690at 146.874 kb on + strand, within AO353_00690at 146.875 kb on - strand, within AO353_00690at 146.875 kb on - strand, within AO353_00690at 146.984 kb on - strand, within AO353_00690at 147.092 kb on + strand, within AO353_00690at 147.100 kb on - strand, within AO353_00690at 147.204 kb on + strand, within AO353_00690at 147.204 kb on + strand, within AO353_00690at 147.204 kb on + strand, within AO353_00690at 147.204 kb on + strand, within AO353_00690at 147.205 kb on - strand, within AO353_00690at 147.205 kb on - strand, within AO353_00690at 147.212 kb on + strand, within AO353_00690at 147.301 kb on - strandat 147.301 kb on - strandat 147.337 kb on - strandat 147.337 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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143,354 + AO353_00675 0.60 -2.2
143,354 + AO353_00675 0.60 -2.2
143,354 + AO353_00675 0.60 -2.5
143,354 + AO353_00675 0.60 -4.2
143,354 + AO353_00675 0.60 -0.2
143,355 - AO353_00675 0.60 -0.2
143,355 - AO353_00675 0.60 -4.0
143,355 - AO353_00675 0.60 -1.8
143,355 - AO353_00675 0.60 +1.6
143,515 + AO353_00675 0.86 -3.4
143,516 - AO353_00675 0.87 -3.2
143,614 + -1.2
143,614 + -2.2
143,614 + -2.8
143,614 + -2.8
143,615 - -2.8
143,615 - -2.5
143,615 - -0.2
143,632 + -3.4
143,633 - -1.2
143,633 - -1.2
143,634 + -2.2
143,634 + -3.2
143,748 + -2.1
143,748 + +0.4
143,749 - +1.8
143,780 - -2.5
143,896 - +2.8
144,141 - AO353_00680 0.65 +0.8
144,276 - -1.8
144,276 - +1.2
144,276 - +3.2
144,276 - -0.5
144,324 - +2.1
144,324 - -1.8
144,324 - -1.8
144,324 - -2.2
144,326 + +2.2
146,512 + +1.1
146,521 + +1.4
146,529 + -1.5
146,530 - +1.7
146,579 + -1.8
146,721 + AO353_00690 0.19 +1.3
146,721 + AO353_00690 0.19 +0.3
146,721 + AO353_00690 0.19 +2.5
146,836 - AO353_00690 0.34 -1.8
146,874 + AO353_00690 0.39 -0.2
146,874 + AO353_00690 0.39 +0.0
146,874 + AO353_00690 0.39 +2.6
146,875 - AO353_00690 0.39 -1.2
146,875 - AO353_00690 0.39 -0.2
146,984 - AO353_00690 0.53 -0.2
147,092 + AO353_00690 0.67 -0.2
147,100 - AO353_00690 0.69 +0.4
147,204 + AO353_00690 0.82 -2.2
147,204 + AO353_00690 0.82 -0.2
147,204 + AO353_00690 0.82 +1.3
147,204 + AO353_00690 0.82 -1.2
147,205 - AO353_00690 0.82 +2.6
147,205 - AO353_00690 0.82 -0.2
147,212 + AO353_00690 0.83 +0.1
147,301 - +0.3
147,301 - +3.4
147,337 - +1.3
147,337 - +0.4

Or see this region's nucleotide sequence