Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00670 and AO353_00675 are separated by 205 nucleotides AO353_00675 and AO353_00680 are separated by 322 nucleotides AO353_00680 and AO353_00685 are separated by 67 nucleotides
AO353_00670: AO353_00670 - acyl-CoA dehydrogenase, at 141,640 to 142,788
_00670
AO353_00675: AO353_00675 - recombination protein RecR, at 142,994 to 143,596
_00675
AO353_00680: AO353_00680 - nucleoid-associated protein, at 143,919 to 144,257
_00680
AO353_00685: AO353_00685 - DNA polymerase III subunit gamma/tau, at 144,325 to 146,433
_00685
Position (kb)
142
143
144 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 142.069 kb on - strand, within AO353_00670 at 142.278 kb on + strand, within AO353_00670 at 142.278 kb on + strand, within AO353_00670 at 142.279 kb on - strand, within AO353_00670 at 142.281 kb on - strand, within AO353_00670 at 142.337 kb on + strand, within AO353_00670 at 142.337 kb on + strand, within AO353_00670 at 142.337 kb on + strand, within AO353_00670 at 142.338 kb on - strand, within AO353_00670 at 142.338 kb on - strand, within AO353_00670 at 142.338 kb on - strand, within AO353_00670 at 142.655 kb on + strand, within AO353_00670 at 142.656 kb on - strand, within AO353_00670 at 142.656 kb on - strand, within AO353_00670 at 142.769 kb on + strand at 142.770 kb on - strand at 142.770 kb on - strand at 142.770 kb on - strand at 142.770 kb on - strand at 142.770 kb on - strand at 142.819 kb on + strand at 142.819 kb on + strand at 142.922 kb on + strand at 142.922 kb on + strand at 142.922 kb on + strand at 142.922 kb on + strand at 142.923 kb on - strand at 142.932 kb on + strand at 142.932 kb on + strand at 142.932 kb on + strand at 142.995 kb on + strand at 142.995 kb on + strand at 142.995 kb on + strand at 142.995 kb on + strand at 143.110 kb on + strand, within AO353_00675 at 143.111 kb on - strand, within AO353_00675 at 143.133 kb on + strand, within AO353_00675 at 143.133 kb on + strand, within AO353_00675 at 143.133 kb on + strand, within AO353_00675 at 143.133 kb on + strand, within AO353_00675 at 143.134 kb on - strand, within AO353_00675 at 143.134 kb on - strand, within AO353_00675 at 143.134 kb on - strand, within AO353_00675 at 143.134 kb on - strand, within AO353_00675 at 143.134 kb on - strand, within AO353_00675 at 143.195 kb on - strand, within AO353_00675 at 143.195 kb on - strand, within AO353_00675 at 143.289 kb on + strand, within AO353_00675 at 143.290 kb on - strand, within AO353_00675 at 143.323 kb on - strand, within AO353_00675 at 143.323 kb on - strand, within AO353_00675 at 143.354 kb on + strand, within AO353_00675 at 143.354 kb on + strand, within AO353_00675 at 143.354 kb on + strand, within AO353_00675 at 143.354 kb on + strand, within AO353_00675 at 143.354 kb on + strand, within AO353_00675 at 143.355 kb on - strand, within AO353_00675 at 143.355 kb on - strand, within AO353_00675 at 143.355 kb on - strand, within AO353_00675 at 143.355 kb on - strand, within AO353_00675 at 143.515 kb on + strand, within AO353_00675 at 143.516 kb on - strand, within AO353_00675 at 143.614 kb on + strand at 143.614 kb on + strand at 143.614 kb on + strand at 143.614 kb on + strand at 143.615 kb on - strand at 143.615 kb on - strand at 143.615 kb on - strand at 143.632 kb on + strand at 143.633 kb on - strand at 143.633 kb on - strand at 143.634 kb on + strand at 143.634 kb on + strand at 143.748 kb on + strand at 143.748 kb on + strand at 143.749 kb on - strand at 143.780 kb on - strand at 143.896 kb on - strand at 144.141 kb on - strand, within AO353_00680 at 144.276 kb on - strand at 144.276 kb on - strand at 144.276 kb on - strand at 144.276 kb on - strand at 144.324 kb on - strand at 144.324 kb on - strand at 144.324 kb on - strand at 144.324 kb on - strand at 144.326 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 142,069 - AO353_00670 0.37 -1.8 142,278 + AO353_00670 0.56 -1.8 142,278 + AO353_00670 0.56 +1.0 142,279 - AO353_00670 0.56 +2.6 142,281 - AO353_00670 0.56 -1.2 142,337 + AO353_00670 0.61 -0.8 142,337 + AO353_00670 0.61 -0.2 142,337 + AO353_00670 0.61 -0.2 142,338 - AO353_00670 0.61 +1.6 142,338 - AO353_00670 0.61 -0.2 142,338 - AO353_00670 0.61 -0.2 142,655 + AO353_00670 0.88 -0.2 142,656 - AO353_00670 0.88 -0.8 142,656 - AO353_00670 0.88 +0.5 142,769 + -1.5 142,770 - +1.4 142,770 - -1.2 142,770 - -3.0 142,770 - +2.7 142,770 - -2.2 142,819 + +1.4 142,819 + +0.4 142,922 + +1.3 142,922 + +0.2 142,922 + +0.2 142,922 + -1.2 142,923 - +1.0 142,932 + -0.2 142,932 + -1.8 142,932 + -0.2 142,995 + -0.8 142,995 + +0.4 142,995 + -2.8 142,995 + +1.4 143,110 + AO353_00675 0.19 -0.2 143,111 - AO353_00675 0.19 -0.2 143,133 + AO353_00675 0.23 -1.2 143,133 + AO353_00675 0.23 -1.2 143,133 + AO353_00675 0.23 -0.2 143,133 + AO353_00675 0.23 -1.2 143,134 - AO353_00675 0.23 -3.9 143,134 - AO353_00675 0.23 -1.2 143,134 - AO353_00675 0.23 -2.8 143,134 - AO353_00675 0.23 -1.2 143,134 - AO353_00675 0.23 -1.2 143,195 - AO353_00675 0.33 -0.2 143,195 - AO353_00675 0.33 -0.2 143,289 + AO353_00675 0.49 -3.0 143,290 - AO353_00675 0.49 -2.5 143,323 - AO353_00675 0.55 -1.8 143,323 - AO353_00675 0.55 -1.2 143,354 + AO353_00675 0.60 -2.2 143,354 + AO353_00675 0.60 -2.2 143,354 + AO353_00675 0.60 -2.5 143,354 + AO353_00675 0.60 -4.2 143,354 + AO353_00675 0.60 -0.2 143,355 - AO353_00675 0.60 -0.2 143,355 - AO353_00675 0.60 -4.0 143,355 - AO353_00675 0.60 -1.8 143,355 - AO353_00675 0.60 +1.6 143,515 + AO353_00675 0.86 -3.4 143,516 - AO353_00675 0.87 -3.2 143,614 + -1.2 143,614 + -2.2 143,614 + -2.8 143,614 + -2.8 143,615 - -2.8 143,615 - -2.5 143,615 - -0.2 143,632 + -3.4 143,633 - -1.2 143,633 - -1.2 143,634 + -2.2 143,634 + -3.2 143,748 + -2.1 143,748 + +0.4 143,749 - +1.8 143,780 - -2.5 143,896 - +2.8 144,141 - AO353_00680 0.65 +0.8 144,276 - -1.8 144,276 - +1.2 144,276 - +3.2 144,276 - -0.5 144,324 - +2.1 144,324 - -1.8 144,324 - -1.8 144,324 - -2.2 144,326 + +2.2
Or see this region's nucleotide sequence