Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00340

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00330 and AO353_00335 are separated by 188 nucleotidesAO353_00335 and AO353_00340 are separated by 123 nucleotidesAO353_00340 and AO353_00345 are separated by 246 nucleotides AO353_00330: AO353_00330 - hypothetical protein, at 60,464 to 61,153 _00330 AO353_00335: AO353_00335 - phosphatase, at 61,342 to 61,962 _00335 AO353_00340: AO353_00340 - chromosome partitioning protein ParA, at 62,086 to 62,349 _00340 AO353_00345: AO353_00345 - NADPH-dependent 7-cyano-7-deazaguanine reductase, at 62,596 to 63,426 _00345 Position (kb) 62 63Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 61.120 kb on + strandat 61.120 kb on + strandat 61.120 kb on + strandat 61.120 kb on + strandat 61.120 kb on + strandat 61.120 kb on + strandat 61.120 kb on + strandat 61.120 kb on + strandat 61.120 kb on + strandat 61.120 kb on + strandat 61.120 kb on + strandat 61.120 kb on + strandat 61.120 kb on + strandat 61.120 kb on + strandat 61.120 kb on + strandat 61.120 kb on + strandat 61.120 kb on + strandat 61.120 kb on + strandat 61.120 kb on + strandat 61.121 kb on - strandat 61.121 kb on - strandat 61.121 kb on - strandat 61.121 kb on - strandat 61.121 kb on - strandat 61.121 kb on - strandat 61.121 kb on - strandat 61.121 kb on - strandat 61.121 kb on - strandat 61.121 kb on - strandat 61.121 kb on - strandat 61.121 kb on - strandat 61.121 kb on - strandat 61.121 kb on - strandat 61.124 kb on + strandat 61.124 kb on + strandat 61.124 kb on + strandat 61.124 kb on + strandat 61.124 kb on + strandat 61.124 kb on + strandat 61.124 kb on + strandat 61.124 kb on + strandat 61.124 kb on + strandat 61.124 kb on + strandat 61.125 kb on - strandat 61.125 kb on - strandat 61.125 kb on - strandat 61.125 kb on - strandat 61.125 kb on - strandat 61.125 kb on - strandat 61.125 kb on - strandat 61.125 kb on - strandat 61.125 kb on - strandat 61.133 kb on + strandat 61.134 kb on - strandat 61.214 kb on - strandat 61.214 kb on - strandat 61.216 kb on + strandat 61.216 kb on + strandat 61.216 kb on + strandat 61.216 kb on + strandat 61.216 kb on + strandat 61.217 kb on - strandat 61.217 kb on - strandat 61.217 kb on - strandat 61.217 kb on - strandat 61.217 kb on - strandat 61.217 kb on - strandat 61.218 kb on + strandat 61.218 kb on + strandat 61.218 kb on + strandat 61.218 kb on + strandat 61.218 kb on + strandat 61.218 kb on + strandat 61.219 kb on - strandat 61.219 kb on - strandat 61.219 kb on - strandat 61.219 kb on - strandat 61.219 kb on - strandat 61.219 kb on - strandat 61.228 kb on - strandat 61.228 kb on - strandat 61.228 kb on - strandat 61.228 kb on - strandat 61.232 kb on - strandat 61.232 kb on - strandat 61.232 kb on - strandat 61.232 kb on - strandat 61.237 kb on + strandat 61.237 kb on + strandat 61.325 kb on - strandat 61.325 kb on - strandat 61.325 kb on - strandat 61.337 kb on + strandat 61.337 kb on + strandat 61.337 kb on + strandat 61.337 kb on + strandat 61.337 kb on + strandat 61.338 kb on - strandat 61.338 kb on - strandat 62.009 kb on - strandat 62.013 kb on + strandat 62.052 kb on + strandat 62.052 kb on + strandat 62.053 kb on - strandat 62.053 kb on - strandat 62.053 kb on - strandat 62.053 kb on - strandat 62.421 kb on + strandat 62.421 kb on + strandat 62.421 kb on + strandat 62.422 kb on - strandat 62.422 kb on - strandat 62.422 kb on - strandat 62.422 kb on - strandat 62.427 kb on + strandat 62.427 kb on + strandat 62.427 kb on + strandat 62.428 kb on - strandat 62.443 kb on - strandat 62.443 kb on - strandat 62.494 kb on - strandat 62.494 kb on - strandat 62.514 kb on + strandat 62.514 kb on + strandat 62.515 kb on - strandat 62.569 kb on + strandat 62.569 kb on + strandat 62.591 kb on + strandat 62.591 kb on + strandat 62.591 kb on + strandat 62.591 kb on + strandat 62.591 kb on + strandat 62.591 kb on + strandat 62.591 kb on + strandat 62.591 kb on + strandat 62.591 kb on + strandat 62.591 kb on + strandat 62.591 kb on + strandat 62.591 kb on + strandat 62.591 kb on + strandat 62.592 kb on - strandat 62.592 kb on - strandat 62.592 kb on - strandat 62.597 kb on + strandat 62.681 kb on + strand, within AO353_00345at 62.690 kb on + strand, within AO353_00345at 62.690 kb on + strand, within AO353_00345at 62.690 kb on + strand, within AO353_00345at 62.690 kb on + strand, within AO353_00345at 62.691 kb on - strand, within AO353_00345at 62.691 kb on - strand, within AO353_00345at 62.691 kb on - strand, within AO353_00345at 62.746 kb on + strand, within AO353_00345at 62.746 kb on + strand, within AO353_00345at 62.793 kb on - strand, within AO353_00345at 62.793 kb on - strand, within AO353_00345at 62.963 kb on + strand, within AO353_00345at 62.963 kb on + strand, within AO353_00345at 62.963 kb on + strand, within AO353_00345at 62.963 kb on + strand, within AO353_00345at 63.013 kb on + strand, within AO353_00345at 63.013 kb on + strand, within AO353_00345at 63.013 kb on + strand, within AO353_00345at 63.014 kb on - strand, within AO353_00345at 63.014 kb on - strand, within AO353_00345at 63.051 kb on + strand, within AO353_00345at 63.155 kb on + strand, within AO353_00345at 63.291 kb on - strand, within AO353_00345at 63.291 kb on - strand, within AO353_00345at 63.291 kb on - strand, within AO353_00345at 63.291 kb on - strand, within AO353_00345

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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61,120 + -0.7
61,120 + +0.8
61,120 + -2.2
61,120 + -0.2
61,120 + -2.2
61,120 + -1.2
61,120 + +1.8
61,120 + +2.1
61,120 + -0.2
61,120 + +1.1
61,120 + +1.4
61,120 + +1.1
61,120 + -1.8
61,120 + -1.8
61,120 + -1.8
61,120 + +0.6
61,120 + -1.2
61,120 + -0.2
61,120 + -2.8
61,121 - -1.8
61,121 - -0.2
61,121 - -0.9
61,121 - +1.2
61,121 - +1.5
61,121 - +0.8
61,121 - -1.8
61,121 - -3.0
61,121 - -0.2
61,121 - -1.2
61,121 - -1.8
61,121 - -2.2
61,121 - -2.2
61,121 - -1.2
61,124 + -1.8
61,124 + -0.2
61,124 + -0.2
61,124 + -0.2
61,124 + -1.8
61,124 + +1.4
61,124 + +2.4
61,124 + +2.1
61,124 + +1.3
61,124 + -2.2
61,125 - -1.2
61,125 - -1.2
61,125 - +2.1
61,125 - -2.0
61,125 - +1.1
61,125 - +1.7
61,125 - +0.4
61,125 - -1.8
61,125 - -1.8
61,133 + -2.8
61,134 - +0.3
61,214 - -0.2
61,214 - -3.4
61,216 + +0.1
61,216 + -1.2
61,216 + -2.2
61,216 + -1.8
61,216 + -3.2
61,217 - +0.6
61,217 - -1.6
61,217 - -1.8
61,217 - -2.5
61,217 - -0.2
61,217 - -0.2
61,218 + +0.6
61,218 + -0.2
61,218 + +1.4
61,218 + +0.7
61,218 + -0.6
61,218 + +1.1
61,219 - +0.8
61,219 - -1.8
61,219 - -1.8
61,219 - -1.2
61,219 - +1.4
61,219 - -1.2
61,228 - -0.2
61,228 - -2.2
61,228 - -1.2
61,228 - -2.2
61,232 - -3.0
61,232 - -1.2
61,232 - -0.2
61,232 - -0.9
61,237 + -1.2
61,237 + -2.5
61,325 - +2.1
61,325 - -2.2
61,325 - -1.2
61,337 + +0.8
61,337 + -3.0
61,337 + +2.0
61,337 + -0.2
61,337 + -0.0
61,338 - -0.2
61,338 - -1.2
62,009 - -0.2
62,013 + -1.5
62,052 + +0.4
62,052 + -1.8
62,053 - +2.6
62,053 - -1.8
62,053 - +1.2
62,053 - +0.9
62,421 + -0.2
62,421 + +1.7
62,421 + -3.0
62,422 - -3.4
62,422 - -1.2
62,422 - +0.0
62,422 - -0.8
62,427 + +2.6
62,427 + -1.2
62,427 + +0.4
62,428 - -0.6
62,443 - -2.1
62,443 - -1.2
62,494 - -1.8
62,494 - -1.2
62,514 + +0.7
62,514 + +0.8
62,515 - -2.2
62,569 + +0.6
62,569 + -1.2
62,591 + +0.1
62,591 + -2.5
62,591 + +0.4
62,591 + -0.2
62,591 + +0.4
62,591 + -1.2
62,591 + -1.6
62,591 + -0.2
62,591 + +0.8
62,591 + -1.8
62,591 + +1.8
62,591 + -1.8
62,591 + +2.3
62,592 - +2.1
62,592 - -1.2
62,592 - -1.2
62,597 + +1.6
62,681 + AO353_00345 0.10 +2.4
62,690 + AO353_00345 0.11 +0.8
62,690 + AO353_00345 0.11 -1.2
62,690 + AO353_00345 0.11 +1.1
62,690 + AO353_00345 0.11 +1.1
62,691 - AO353_00345 0.11 -1.2
62,691 - AO353_00345 0.11 -1.8
62,691 - AO353_00345 0.11 +2.4
62,746 + AO353_00345 0.18 -2.2
62,746 + AO353_00345 0.18 -1.2
62,793 - AO353_00345 0.24 -0.2
62,793 - AO353_00345 0.24 +0.8
62,963 + AO353_00345 0.44 -0.2
62,963 + AO353_00345 0.44 +0.4
62,963 + AO353_00345 0.44 +0.5
62,963 + AO353_00345 0.44 +0.8
63,013 + AO353_00345 0.50 -1.5
63,013 + AO353_00345 0.50 +1.4
63,013 + AO353_00345 0.50 +2.6
63,014 - AO353_00345 0.50 -0.8
63,014 - AO353_00345 0.50 -0.9
63,051 + AO353_00345 0.55 +0.4
63,155 + AO353_00345 0.67 -1.2
63,291 - AO353_00345 0.84 -0.6
63,291 - AO353_00345 0.84 -1.8
63,291 - AO353_00345 0.84 -0.6
63,291 - AO353_00345 0.84 +2.1

Or see this region's nucleotide sequence