Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS22035 and ABZR86_RS22040 are separated by 59 nucleotides ABZR86_RS22040 and ABZR86_RS22045 overlap by 4 nucleotides
ABZR86_RS22035: ABZR86_RS22035 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 368,681 to 370,063
_RS22035
ABZR86_RS22040: ABZR86_RS22040 - lipoprotein insertase outer membrane protein LolB, at 370,123 to 370,731
_RS22040
ABZR86_RS22045: ABZR86_RS22045 - tetratricopeptide repeat protein, at 370,728 to 372,464
_RS22045
Position (kb) 370
371 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 369.673 kb on - strand, within ABZR86_RS22035 at 369.958 kb on - strand at 370.026 kb on - strand at 370.057 kb on - strand at 370.057 kb on - strand at 370.107 kb on + strand at 370.124 kb on + strand at 370.124 kb on + strand at 370.125 kb on - strand at 370.933 kb on + strand, within ABZR86_RS22045 at 371.047 kb on + strand, within ABZR86_RS22045 at 371.047 kb on + strand, within ABZR86_RS22045 at 371.048 kb on - strand, within ABZR86_RS22045 at 371.048 kb on - strand, within ABZR86_RS22045 at 371.143 kb on + strand, within ABZR86_RS22045 at 371.143 kb on + strand, within ABZR86_RS22045 at 371.143 kb on + strand, within ABZR86_RS22045 at 371.161 kb on + strand, within ABZR86_RS22045 at 371.245 kb on + strand, within ABZR86_RS22045 at 371.245 kb on + strand, within ABZR86_RS22045 at 371.245 kb on + strand, within ABZR86_RS22045 at 371.245 kb on + strand, within ABZR86_RS22045 at 371.246 kb on - strand, within ABZR86_RS22045 at 371.246 kb on - strand, within ABZR86_RS22045 at 371.246 kb on - strand, within ABZR86_RS22045 at 371.246 kb on - strand, within ABZR86_RS22045 at 371.246 kb on - strand, within ABZR86_RS22045 at 371.260 kb on - strand, within ABZR86_RS22045 at 371.267 kb on - strand, within ABZR86_RS22045 at 371.267 kb on - strand, within ABZR86_RS22045 at 371.299 kb on + strand, within ABZR86_RS22045 at 371.423 kb on - strand, within ABZR86_RS22045 at 371.423 kb on - strand, within ABZR86_RS22045 at 371.527 kb on + strand, within ABZR86_RS22045 at 371.587 kb on + strand, within ABZR86_RS22045 at 371.587 kb on + strand, within ABZR86_RS22045 at 371.587 kb on + strand, within ABZR86_RS22045 at 371.588 kb on - strand, within ABZR86_RS22045 at 371.588 kb on - strand, within ABZR86_RS22045 at 371.638 kb on + strand, within ABZR86_RS22045 at 371.638 kb on + strand, within ABZR86_RS22045 at 371.639 kb on - strand, within ABZR86_RS22045 at 371.639 kb on - strand, within ABZR86_RS22045 at 371.639 kb on - strand, within ABZR86_RS22045 at 371.639 kb on - strand, within ABZR86_RS22045 at 371.668 kb on + strand, within ABZR86_RS22045 at 371.669 kb on - strand, within ABZR86_RS22045
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 369,673 - ABZR86_RS22035 0.72 +0.4 369,958 - +0.8 370,026 - -0.0 370,057 - -0.3 370,057 - +0.8 370,107 + +0.3 370,124 + -0.0 370,124 + -0.3 370,125 - -0.9 370,933 + ABZR86_RS22045 0.12 -1.3 371,047 + ABZR86_RS22045 0.18 -2.1 371,047 + ABZR86_RS22045 0.18 -0.4 371,048 - ABZR86_RS22045 0.18 -1.8 371,048 - ABZR86_RS22045 0.18 -1.2 371,143 + ABZR86_RS22045 0.24 -1.2 371,143 + ABZR86_RS22045 0.24 -1.1 371,143 + ABZR86_RS22045 0.24 -0.5 371,161 + ABZR86_RS22045 0.25 -0.8 371,245 + ABZR86_RS22045 0.30 -1.0 371,245 + ABZR86_RS22045 0.30 -0.7 371,245 + ABZR86_RS22045 0.30 -1.4 371,245 + ABZR86_RS22045 0.30 +0.3 371,246 - ABZR86_RS22045 0.30 -0.7 371,246 - ABZR86_RS22045 0.30 -2.0 371,246 - ABZR86_RS22045 0.30 -3.4 371,246 - ABZR86_RS22045 0.30 -0.7 371,246 - ABZR86_RS22045 0.30 -0.5 371,260 - ABZR86_RS22045 0.31 -0.5 371,267 - ABZR86_RS22045 0.31 -0.2 371,267 - ABZR86_RS22045 0.31 -0.4 371,299 + ABZR86_RS22045 0.33 -1.0 371,423 - ABZR86_RS22045 0.40 -3.0 371,423 - ABZR86_RS22045 0.40 -0.4 371,527 + ABZR86_RS22045 0.46 -2.3 371,587 + ABZR86_RS22045 0.49 -1.2 371,587 + ABZR86_RS22045 0.49 +0.5 371,587 + ABZR86_RS22045 0.49 -1.0 371,588 - ABZR86_RS22045 0.50 -1.4 371,588 - ABZR86_RS22045 0.50 -1.0 371,638 + ABZR86_RS22045 0.52 -2.0 371,638 + ABZR86_RS22045 0.52 -1.7 371,639 - ABZR86_RS22045 0.52 -0.6 371,639 - ABZR86_RS22045 0.52 +0.7 371,639 - ABZR86_RS22045 0.52 -0.6 371,639 - ABZR86_RS22045 0.52 -2.0 371,668 + ABZR86_RS22045 0.54 +0.0 371,669 - ABZR86_RS22045 0.54 -0.9
Or see this region's nucleotide sequence