Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS21420 and ABZR86_RS21425 are separated by 13 nucleotides ABZR86_RS21425 and ABZR86_RS21430 are separated by 4 nucleotides ABZR86_RS21430 and ABZR86_RS21435 are separated by 5 nucleotides
ABZR86_RS21420: ABZR86_RS21420 - alpha/beta fold hydrolase, at 249,760 to 250,602
_RS21420
ABZR86_RS21425: ABZR86_RS21425 - EamA family transporter, at 250,616 to 250,981
_RS21425
ABZR86_RS21430: ABZR86_RS21430 - EamA family transporter, at 250,986 to 251,438
_RS21430
ABZR86_RS21435: ABZR86_RS21435 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 251,444 to 252,646
_RS21435
Position (kb) 250
251 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 249.655 kb on + strand at 249.692 kb on + strand at 249.692 kb on + strand at 249.692 kb on + strand at 249.693 kb on - strand at 249.693 kb on - strand at 249.725 kb on - strand at 249.889 kb on + strand, within ABZR86_RS21420 at 249.890 kb on - strand, within ABZR86_RS21420 at 249.958 kb on + strand, within ABZR86_RS21420 at 250.096 kb on + strand, within ABZR86_RS21420 at 250.097 kb on - strand, within ABZR86_RS21420 at 250.138 kb on + strand, within ABZR86_RS21420 at 250.138 kb on + strand, within ABZR86_RS21420 at 250.139 kb on - strand, within ABZR86_RS21420 at 250.219 kb on + strand, within ABZR86_RS21420 at 250.330 kb on + strand, within ABZR86_RS21420 at 250.330 kb on + strand, within ABZR86_RS21420 at 250.331 kb on - strand, within ABZR86_RS21420 at 250.331 kb on - strand, within ABZR86_RS21420 at 250.489 kb on + strand, within ABZR86_RS21420 at 250.490 kb on - strand, within ABZR86_RS21420 at 250.490 kb on - strand, within ABZR86_RS21420 at 250.490 kb on - strand, within ABZR86_RS21420 at 250.490 kb on - strand, within ABZR86_RS21420 at 250.490 kb on - strand, within ABZR86_RS21420 at 251.668 kb on - strand, within ABZR86_RS21435 at 251.858 kb on + strand, within ABZR86_RS21435 at 251.972 kb on + strand, within ABZR86_RS21435 at 251.973 kb on - strand, within ABZR86_RS21435 at 251.973 kb on - strand, within ABZR86_RS21435
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 249,655 + -1.2 249,692 + -0.9 249,692 + -0.3 249,692 + -0.3 249,693 - -0.4 249,693 - -0.7 249,725 - +0.1 249,889 + ABZR86_RS21420 0.15 -1.2 249,890 - ABZR86_RS21420 0.15 -0.9 249,958 + ABZR86_RS21420 0.23 -1.6 250,096 + ABZR86_RS21420 0.40 -0.5 250,097 - ABZR86_RS21420 0.40 -1.5 250,138 + ABZR86_RS21420 0.45 -1.4 250,138 + ABZR86_RS21420 0.45 -0.6 250,139 - ABZR86_RS21420 0.45 -1.9 250,219 + ABZR86_RS21420 0.54 -2.9 250,330 + ABZR86_RS21420 0.68 -2.0 250,330 + ABZR86_RS21420 0.68 -1.8 250,331 - ABZR86_RS21420 0.68 -1.4 250,331 - ABZR86_RS21420 0.68 -1.5 250,489 + ABZR86_RS21420 0.86 -1.8 250,490 - ABZR86_RS21420 0.87 -1.0 250,490 - ABZR86_RS21420 0.87 -1.6 250,490 - ABZR86_RS21420 0.87 -1.4 250,490 - ABZR86_RS21420 0.87 -1.1 250,490 - ABZR86_RS21420 0.87 -1.5 251,668 - ABZR86_RS21435 0.19 -0.9 251,858 + ABZR86_RS21435 0.34 -0.2 251,972 + ABZR86_RS21435 0.44 -0.4 251,973 - ABZR86_RS21435 0.44 -1.7 251,973 - ABZR86_RS21435 0.44 +0.4
Or see this region's nucleotide sequence