Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS10675 and ABZR86_RS10680 are separated by 178 nucleotides ABZR86_RS10680 and ABZR86_RS10685 are separated by 408 nucleotides
ABZR86_RS10675: ABZR86_RS10675 - bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II, at 2,371,672 to 2,372,763
_RS10675
ABZR86_RS10680: ABZR86_RS10680 - riboflavin synthase, at 2,372,942 to 2,373,586
_RS10680
ABZR86_RS10685: ABZR86_RS10685 - LysR family transcriptional regulator, at 2,373,995 to 2,374,897
_RS10685
Position (kb)
2372
2373
2374 Strain fitness (log2 ratio)
-1
0
1 at 2372.786 kb on + strand at 2372.789 kb on + strand at 2373.903 kb on + strand at 2373.941 kb on - strand at 2373.941 kb on - strand at 2373.996 kb on + strand at 2373.996 kb on + strand at 2373.996 kb on + strand at 2373.996 kb on + strand at 2373.996 kb on + strand at 2374.149 kb on + strand, within ABZR86_RS10685 at 2374.149 kb on + strand, within ABZR86_RS10685 at 2374.149 kb on + strand, within ABZR86_RS10685 at 2374.149 kb on + strand, within ABZR86_RS10685 at 2374.150 kb on - strand, within ABZR86_RS10685 at 2374.150 kb on - strand, within ABZR86_RS10685 at 2374.150 kb on - strand, within ABZR86_RS10685 at 2374.150 kb on - strand, within ABZR86_RS10685 at 2374.150 kb on - strand, within ABZR86_RS10685 at 2374.363 kb on - strand, within ABZR86_RS10685 at 2374.384 kb on - strand, within ABZR86_RS10685 at 2374.384 kb on - strand, within ABZR86_RS10685 at 2374.384 kb on - strand, within ABZR86_RS10685 at 2374.384 kb on - strand, within ABZR86_RS10685 at 2374.482 kb on + strand, within ABZR86_RS10685 at 2374.482 kb on + strand, within ABZR86_RS10685 at 2374.482 kb on + strand, within ABZR86_RS10685 at 2374.482 kb on + strand, within ABZR86_RS10685 at 2374.483 kb on - strand, within ABZR86_RS10685 at 2374.483 kb on - strand, within ABZR86_RS10685 at 2374.483 kb on - strand, within ABZR86_RS10685 at 2374.495 kb on - strand, within ABZR86_RS10685 at 2374.495 kb on - strand, within ABZR86_RS10685 at 2374.497 kb on - strand, within ABZR86_RS10685 at 2374.569 kb on + strand, within ABZR86_RS10685
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 2,372,786 + +0.2 2,372,789 + -0.4 2,373,903 + -0.4 2,373,941 - +1.5 2,373,941 - -0.6 2,373,996 + -0.0 2,373,996 + -0.4 2,373,996 + +0.1 2,373,996 + +0.0 2,373,996 + +0.3 2,374,149 + ABZR86_RS10685 0.17 +0.8 2,374,149 + ABZR86_RS10685 0.17 -0.1 2,374,149 + ABZR86_RS10685 0.17 -0.8 2,374,149 + ABZR86_RS10685 0.17 -0.2 2,374,150 - ABZR86_RS10685 0.17 +0.5 2,374,150 - ABZR86_RS10685 0.17 +0.5 2,374,150 - ABZR86_RS10685 0.17 +0.2 2,374,150 - ABZR86_RS10685 0.17 +1.0 2,374,150 - ABZR86_RS10685 0.17 +0.5 2,374,363 - ABZR86_RS10685 0.41 +0.2 2,374,384 - ABZR86_RS10685 0.43 +0.0 2,374,384 - ABZR86_RS10685 0.43 -0.1 2,374,384 - ABZR86_RS10685 0.43 -0.1 2,374,384 - ABZR86_RS10685 0.43 +0.8 2,374,482 + ABZR86_RS10685 0.54 +0.1 2,374,482 + ABZR86_RS10685 0.54 -0.2 2,374,482 + ABZR86_RS10685 0.54 -0.1 2,374,482 + ABZR86_RS10685 0.54 +0.1 2,374,483 - ABZR86_RS10685 0.54 -0.5 2,374,483 - ABZR86_RS10685 0.54 +1.2 2,374,483 - ABZR86_RS10685 0.54 +0.4 2,374,495 - ABZR86_RS10685 0.55 -0.5 2,374,495 - ABZR86_RS10685 0.55 +0.4 2,374,497 - ABZR86_RS10685 0.56 +0.7 2,374,569 + ABZR86_RS10685 0.64 +1.7
Or see this region's nucleotide sequence