Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS08145 and ABZR86_RS08150 are separated by 96 nucleotides ABZR86_RS08150 and ABZR86_RS08155 overlap by 4 nucleotides ABZR86_RS08155 and ABZR86_RS08160 overlap by 4 nucleotides
ABZR86_RS08145: ABZR86_RS08145 - DUF2147 domain-containing protein, at 1,816,408 to 1,816,848
_RS08145
ABZR86_RS08150: ABZR86_RS08150 - DeoR/GlpR family DNA-binding transcription regulator, at 1,816,945 to 1,817,757
_RS08150
ABZR86_RS08155: ABZR86_RS08155 - HAD family hydrolase, at 1,817,754 to 1,818,392
_RS08155
ABZR86_RS08160: ABZR86_RS08160 - MFS transporter, at 1,818,389 to 1,819,507
_RS08160
Position (kb)
1817
1818
1819 Strain fitness (log2 ratio)
-1
0
1 at 1816.795 kb on + strand, within ABZR86_RS08145 at 1816.796 kb on - strand, within ABZR86_RS08145 at 1816.847 kb on - strand at 1816.856 kb on + strand at 1816.856 kb on + strand at 1816.857 kb on - strand at 1816.872 kb on + strand at 1816.872 kb on + strand at 1816.879 kb on + strand at 1816.880 kb on - strand at 1816.893 kb on + strand at 1816.893 kb on + strand at 1816.893 kb on + strand at 1816.894 kb on - strand at 1816.894 kb on - strand at 1816.894 kb on - strand at 1816.894 kb on - strand at 1816.894 kb on - strand at 1816.946 kb on + strand at 1816.947 kb on - strand at 1816.947 kb on - strand at 1816.998 kb on - strand at 1817.626 kb on + strand, within ABZR86_RS08150 at 1817.887 kb on + strand, within ABZR86_RS08155 at 1817.888 kb on - strand, within ABZR86_RS08155 at 1817.888 kb on - strand, within ABZR86_RS08155 at 1817.935 kb on + strand, within ABZR86_RS08155 at 1817.935 kb on + strand, within ABZR86_RS08155 at 1818.010 kb on + strand, within ABZR86_RS08155 at 1818.061 kb on + strand, within ABZR86_RS08155 at 1818.061 kb on + strand, within ABZR86_RS08155 at 1818.061 kb on + strand, within ABZR86_RS08155 at 1818.316 kb on + strand, within ABZR86_RS08155 at 1818.316 kb on + strand, within ABZR86_RS08155 at 1818.316 kb on + strand, within ABZR86_RS08155 at 1818.317 kb on - strand, within ABZR86_RS08155 at 1818.317 kb on - strand, within ABZR86_RS08155 at 1818.317 kb on - strand, within ABZR86_RS08155 at 1818.317 kb on - strand, within ABZR86_RS08155 at 1818.366 kb on - strand at 1818.519 kb on + strand, within ABZR86_RS08160 at 1818.520 kb on - strand, within ABZR86_RS08160 at 1818.795 kb on + strand, within ABZR86_RS08160 at 1818.796 kb on - strand, within ABZR86_RS08160 at 1818.796 kb on - strand, within ABZR86_RS08160 at 1818.915 kb on - strand, within ABZR86_RS08160 at 1819.209 kb on + strand, within ABZR86_RS08160
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 1,816,795 + ABZR86_RS08145 0.88 -1.4 1,816,796 - ABZR86_RS08145 0.88 -1.4 1,816,847 - +0.2 1,816,856 + -0.4 1,816,856 + +0.1 1,816,857 - -0.3 1,816,872 + +0.5 1,816,872 + -0.7 1,816,879 + -0.4 1,816,880 - +0.1 1,816,893 + -0.4 1,816,893 + -0.5 1,816,893 + -0.3 1,816,894 - -1.2 1,816,894 - +1.1 1,816,894 - -1.5 1,816,894 - +0.5 1,816,894 - +1.6 1,816,946 + +0.5 1,816,947 - +0.4 1,816,947 - +0.6 1,816,998 - -1.4 1,817,626 + ABZR86_RS08150 0.84 -0.1 1,817,887 + ABZR86_RS08155 0.21 -0.8 1,817,888 - ABZR86_RS08155 0.21 -0.6 1,817,888 - ABZR86_RS08155 0.21 -1.7 1,817,935 + ABZR86_RS08155 0.28 -0.1 1,817,935 + ABZR86_RS08155 0.28 -0.7 1,818,010 + ABZR86_RS08155 0.40 -0.1 1,818,061 + ABZR86_RS08155 0.48 +0.1 1,818,061 + ABZR86_RS08155 0.48 -0.8 1,818,061 + ABZR86_RS08155 0.48 -1.0 1,818,316 + ABZR86_RS08155 0.88 -0.8 1,818,316 + ABZR86_RS08155 0.88 -0.4 1,818,316 + ABZR86_RS08155 0.88 -0.8 1,818,317 - ABZR86_RS08155 0.88 -0.8 1,818,317 - ABZR86_RS08155 0.88 -1.0 1,818,317 - ABZR86_RS08155 0.88 +0.7 1,818,317 - ABZR86_RS08155 0.88 -0.2 1,818,366 - -1.2 1,818,519 + ABZR86_RS08160 0.12 -0.1 1,818,520 - ABZR86_RS08160 0.12 +0.3 1,818,795 + ABZR86_RS08160 0.36 -0.5 1,818,796 - ABZR86_RS08160 0.36 -0.3 1,818,796 - ABZR86_RS08160 0.36 -0.8 1,818,915 - ABZR86_RS08160 0.47 -0.4 1,819,209 + ABZR86_RS08160 0.73 -1.4
Or see this region's nucleotide sequence