Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS08140

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS08135 and ABZR86_RS08140 are separated by 78 nucleotidesABZR86_RS08140 and ABZR86_RS08145 are separated by 138 nucleotidesABZR86_RS08145 and ABZR86_RS08150 are separated by 96 nucleotides ABZR86_RS08135: ABZR86_RS08135 - hypothetical protein, at 1,814,497 to 1,815,096 _RS08135 ABZR86_RS08140: ABZR86_RS08140 - iron-sulfur cluster carrier protein ApbC, at 1,815,175 to 1,816,269 _RS08140 ABZR86_RS08145: ABZR86_RS08145 - DUF2147 domain-containing protein, at 1,816,408 to 1,816,848 _RS08145 ABZR86_RS08150: ABZR86_RS08150 - DeoR/GlpR family DNA-binding transcription regulator, at 1,816,945 to 1,817,757 _RS08150 Position (kb) 1815 1816 1817Strain fitness (log2 ratio) -1 0 1at 1814.207 kb on + strandat 1814.207 kb on + strandat 1814.397 kb on + strandat 1814.800 kb on + strand, within ABZR86_RS08135at 1815.095 kb on - strandat 1815.157 kb on + strandat 1815.157 kb on + strandat 1815.158 kb on - strandat 1816.304 kb on - strandat 1816.304 kb on - strandat 1816.304 kb on - strandat 1816.383 kb on + strandat 1816.383 kb on + strandat 1816.384 kb on - strandat 1816.384 kb on - strandat 1816.384 kb on - strandat 1816.384 kb on - strandat 1816.461 kb on + strand, within ABZR86_RS08145at 1816.741 kb on + strand, within ABZR86_RS08145at 1816.742 kb on - strand, within ABZR86_RS08145at 1816.742 kb on - strand, within ABZR86_RS08145at 1816.742 kb on - strand, within ABZR86_RS08145at 1816.795 kb on + strand, within ABZR86_RS08145at 1816.796 kb on - strand, within ABZR86_RS08145at 1816.847 kb on - strandat 1816.856 kb on + strandat 1816.856 kb on + strandat 1816.857 kb on - strandat 1816.872 kb on + strandat 1816.872 kb on + strandat 1816.879 kb on + strandat 1816.880 kb on - strandat 1816.893 kb on + strandat 1816.893 kb on + strandat 1816.893 kb on + strandat 1816.894 kb on - strandat 1816.894 kb on - strandat 1816.894 kb on - strandat 1816.894 kb on - strandat 1816.894 kb on - strandat 1816.946 kb on + strandat 1816.947 kb on - strandat 1816.947 kb on - strandat 1816.998 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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1,814,207 + +0.7
1,814,207 + +0.2
1,814,397 + -0.4
1,814,800 + ABZR86_RS08135 0.51 +1.1
1,815,095 - -0.3
1,815,157 + -0.0
1,815,157 + -0.4
1,815,158 - -1.0
1,816,304 - -0.0
1,816,304 - +0.8
1,816,304 - +1.4
1,816,383 + +0.3
1,816,383 + -0.1
1,816,384 - -0.6
1,816,384 - -1.7
1,816,384 - -1.0
1,816,384 - -0.1
1,816,461 + ABZR86_RS08145 0.12 -0.3
1,816,741 + ABZR86_RS08145 0.76 +0.4
1,816,742 - ABZR86_RS08145 0.76 +0.0
1,816,742 - ABZR86_RS08145 0.76 -0.3
1,816,742 - ABZR86_RS08145 0.76 -0.1
1,816,795 + ABZR86_RS08145 0.88 -1.4
1,816,796 - ABZR86_RS08145 0.88 -1.4
1,816,847 - +0.2
1,816,856 + -0.4
1,816,856 + +0.1
1,816,857 - -0.3
1,816,872 + +0.5
1,816,872 + -0.7
1,816,879 + -0.4
1,816,880 - +0.1
1,816,893 + -0.4
1,816,893 + -0.5
1,816,893 + -0.3
1,816,894 - -1.2
1,816,894 - +1.1
1,816,894 - -1.5
1,816,894 - +0.5
1,816,894 - +1.6
1,816,946 + +0.5
1,816,947 - +0.4
1,816,947 - +0.6
1,816,998 - -1.4

Or see this region's nucleotide sequence