Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS01760 and ABZR86_RS01765 are separated by 192 nucleotides ABZR86_RS01765 and ABZR86_RS01770 are separated by 95 nucleotides ABZR86_RS01770 and ABZR86_RS01775 are separated by 85 nucleotides ABZR86_RS01775 and ABZR86_RS01780 are separated by 107 nucleotides
ABZR86_RS01760: ABZR86_RS01760 - flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, at 382,128 to 383,387
_RS01760
ABZR86_RS01765: ABZR86_RS01765 - DUF4156 domain-containing protein, at 383,580 to 383,906
_RS01765
ABZR86_RS01770: ABZR86_RS01770 - methyltransferase domain-containing protein, at 384,002 to 384,697
_RS01770
ABZR86_RS01775: ABZR86_RS01775 - HD-GYP domain-containing protein, at 384,783 to 385,589
_RS01775
ABZR86_RS01780: ABZR86_RS01780 - helix-turn-helix domain-containing protein, at 385,697 to 386,659
_RS01780
Position (kb) 384
385 Strain fitness (log2 ratio) -2
-1
0
1
2 at 383.530 kb on - strand at 383.546 kb on - strand at 383.546 kb on - strand at 383.546 kb on - strand at 383.660 kb on + strand, within ABZR86_RS01765 at 383.661 kb on - strand, within ABZR86_RS01765 at 383.661 kb on - strand, within ABZR86_RS01765 at 383.774 kb on + strand, within ABZR86_RS01765 at 383.775 kb on - strand, within ABZR86_RS01765 at 383.775 kb on - strand, within ABZR86_RS01765 at 383.847 kb on + strand, within ABZR86_RS01765 at 383.847 kb on + strand, within ABZR86_RS01765 at 383.847 kb on + strand, within ABZR86_RS01765 at 383.847 kb on + strand, within ABZR86_RS01765 at 383.847 kb on + strand, within ABZR86_RS01765 at 383.848 kb on - strand, within ABZR86_RS01765 at 383.848 kb on - strand, within ABZR86_RS01765 at 383.848 kb on - strand, within ABZR86_RS01765 at 383.904 kb on + strand at 383.913 kb on + strand at 383.914 kb on - strand at 383.978 kb on + strand at 383.978 kb on + strand at 383.978 kb on + strand at 383.979 kb on - strand at 383.979 kb on - strand at 383.979 kb on - strand at 383.979 kb on - strand at 383.979 kb on - strand at 383.979 kb on - strand at 383.999 kb on + strand at 383.999 kb on + strand at 383.999 kb on + strand at 383.999 kb on + strand at 383.999 kb on + strand at 383.999 kb on + strand at 383.999 kb on + strand at 383.999 kb on + strand at 383.999 kb on + strand at 383.999 kb on + strand at 384.000 kb on - strand at 384.000 kb on - strand at 384.000 kb on - strand at 384.000 kb on - strand at 384.000 kb on - strand at 384.000 kb on - strand at 384.000 kb on - strand at 384.000 kb on - strand at 384.000 kb on - strand at 384.081 kb on + strand, within ABZR86_RS01770 at 384.081 kb on + strand, within ABZR86_RS01770 at 384.081 kb on + strand, within ABZR86_RS01770 at 384.082 kb on - strand, within ABZR86_RS01770 at 384.152 kb on - strand, within ABZR86_RS01770 at 384.306 kb on - strand, within ABZR86_RS01770 at 384.306 kb on - strand, within ABZR86_RS01770 at 384.554 kb on + strand, within ABZR86_RS01770 at 384.554 kb on + strand, within ABZR86_RS01770 at 384.555 kb on - strand, within ABZR86_RS01770 at 384.583 kb on + strand, within ABZR86_RS01770 at 384.583 kb on + strand, within ABZR86_RS01770 at 384.584 kb on - strand, within ABZR86_RS01770 at 384.802 kb on + strand at 384.802 kb on + strand at 384.802 kb on + strand at 384.802 kb on + strand at 384.803 kb on - strand at 384.803 kb on - strand at 384.819 kb on + strand at 384.819 kb on + strand at 384.819 kb on + strand at 384.819 kb on + strand at 384.820 kb on - strand at 384.820 kb on - strand at 384.954 kb on + strand, within ABZR86_RS01775 at 384.954 kb on + strand, within ABZR86_RS01775 at 385.279 kb on - strand, within ABZR86_RS01775 at 385.455 kb on + strand, within ABZR86_RS01775 at 385.456 kb on - strand, within ABZR86_RS01775 at 385.456 kb on - strand, within ABZR86_RS01775 at 385.456 kb on - strand, within ABZR86_RS01775 at 385.554 kb on + strand at 385.555 kb on - strand at 385.555 kb on - strand at 385.555 kb on - strand at 385.596 kb on + strand at 385.596 kb on + strand at 385.596 kb on + strand at 385.596 kb on + strand at 385.597 kb on - strand at 385.597 kb on - strand at 385.597 kb on - strand at 385.597 kb on - strand at 385.597 kb on - strand at 385.639 kb on - strand at 385.683 kb on + strand at 385.683 kb on + strand at 385.683 kb on + strand at 385.683 kb on + strand at 385.683 kb on + strand at 385.683 kb on + strand at 385.684 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 383,530 - +0.2 383,546 - +0.6 383,546 - +1.6 383,546 - -0.2 383,660 + ABZR86_RS01765 0.24 -0.0 383,661 - ABZR86_RS01765 0.25 -0.3 383,661 - ABZR86_RS01765 0.25 +0.9 383,774 + ABZR86_RS01765 0.59 -0.7 383,775 - ABZR86_RS01765 0.60 -0.4 383,775 - ABZR86_RS01765 0.60 -1.4 383,847 + ABZR86_RS01765 0.82 +1.9 383,847 + ABZR86_RS01765 0.82 -0.4 383,847 + ABZR86_RS01765 0.82 +0.5 383,847 + ABZR86_RS01765 0.82 +0.3 383,847 + ABZR86_RS01765 0.82 +0.4 383,848 - ABZR86_RS01765 0.82 +0.1 383,848 - ABZR86_RS01765 0.82 +0.9 383,848 - ABZR86_RS01765 0.82 -0.2 383,904 + -0.2 383,913 + +0.0 383,914 - +0.2 383,978 + -0.1 383,978 + -2.7 383,978 + +0.4 383,979 - +0.3 383,979 - -1.3 383,979 - -0.5 383,979 - +0.4 383,979 - +0.3 383,979 - +0.6 383,999 + +0.4 383,999 + +0.3 383,999 + -0.3 383,999 + +1.1 383,999 + -1.0 383,999 + -1.2 383,999 + -0.0 383,999 + -0.1 383,999 + +0.0 383,999 + +0.1 384,000 - +0.8 384,000 - +0.4 384,000 - -0.9 384,000 - +0.2 384,000 - -0.2 384,000 - -0.6 384,000 - -0.1 384,000 - +0.4 384,000 - -0.3 384,081 + ABZR86_RS01770 0.11 +0.4 384,081 + ABZR86_RS01770 0.11 +0.1 384,081 + ABZR86_RS01770 0.11 +0.1 384,082 - ABZR86_RS01770 0.11 +1.3 384,152 - ABZR86_RS01770 0.22 -0.0 384,306 - ABZR86_RS01770 0.44 +0.8 384,306 - ABZR86_RS01770 0.44 -0.1 384,554 + ABZR86_RS01770 0.79 +1.2 384,554 + ABZR86_RS01770 0.79 -0.4 384,555 - ABZR86_RS01770 0.79 -0.4 384,583 + ABZR86_RS01770 0.83 -2.2 384,583 + ABZR86_RS01770 0.83 -0.3 384,584 - ABZR86_RS01770 0.84 -0.3 384,802 + -0.4 384,802 + -0.5 384,802 + -0.4 384,802 + -0.7 384,803 - -0.7 384,803 - +0.6 384,819 + +0.9 384,819 + +0.5 384,819 + -1.7 384,819 + -0.7 384,820 - -0.1 384,820 - +1.4 384,954 + ABZR86_RS01775 0.21 +1.0 384,954 + ABZR86_RS01775 0.21 +0.3 385,279 - ABZR86_RS01775 0.61 +0.3 385,455 + ABZR86_RS01775 0.83 -0.3 385,456 - ABZR86_RS01775 0.83 +0.6 385,456 - ABZR86_RS01775 0.83 +0.2 385,456 - ABZR86_RS01775 0.83 -0.9 385,554 + +0.1 385,555 - +0.8 385,555 - +0.3 385,555 - +1.0 385,596 + +0.4 385,596 + +0.0 385,596 + -0.2 385,596 + +0.1 385,597 - +0.1 385,597 - +0.2 385,597 - -0.4 385,597 - -0.7 385,597 - -0.5 385,639 - +0.1 385,683 + +0.6 385,683 + -0.0 385,683 + +0.1 385,683 + +0.1 385,683 + +0.6 385,683 + -0.6 385,684 - +0.2
Or see this region's nucleotide sequence