Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004213 and ABIE53_004214 overlap by 4 nucleotides ABIE53_004214 and ABIE53_004215 are separated by 36 nucleotides ABIE53_004215 and ABIE53_004216 are separated by 362 nucleotides ABIE53_004216 and ABIE53_004217 are separated by 31 nucleotides
ABIE53_004213: ABIE53_004213 - PTS system fructose-specific IIC component, at 387,034 to 388,869
_004213
ABIE53_004214: ABIE53_004214 - hypothetical protein, at 388,866 to 389,237
_004214
ABIE53_004215: ABIE53_004215 - cytochrome c biogenesis protein CcdA/thiol-disulfide isomerase/thioredoxin, at 389,274 to 391,175
_004215
ABIE53_004216: ABIE53_004216 - thiol-disulfide isomerase/thioredoxin, at 391,538 to 392,089
_004216
ABIE53_004217: ABIE53_004217 - LysR family glycine cleavage system transcriptional activator, at 392,121 to 393,089
_004217
Position (kb) 389
390
391
392 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 388.285 kb on + strand, within ABIE53_004213 at 388.285 kb on + strand, within ABIE53_004213 at 388.285 kb on + strand, within ABIE53_004213 at 388.285 kb on + strand, within ABIE53_004213 at 388.286 kb on - strand, within ABIE53_004213 at 388.286 kb on - strand, within ABIE53_004213 at 388.286 kb on - strand, within ABIE53_004213 at 388.286 kb on - strand, within ABIE53_004213 at 388.286 kb on - strand, within ABIE53_004213 at 388.286 kb on - strand, within ABIE53_004213 at 388.432 kb on + strand, within ABIE53_004213 at 388.468 kb on + strand, within ABIE53_004213 at 388.469 kb on - strand, within ABIE53_004213 at 388.469 kb on - strand, within ABIE53_004213 at 388.786 kb on + strand at 388.786 kb on + strand at 388.786 kb on + strand at 388.786 kb on + strand at 388.786 kb on + strand at 388.786 kb on + strand at 388.786 kb on + strand at 388.786 kb on + strand at 388.786 kb on + strand at 388.786 kb on + strand at 388.786 kb on + strand at 388.786 kb on + strand at 388.786 kb on + strand at 388.786 kb on + strand at 388.786 kb on + strand at 388.787 kb on - strand at 388.787 kb on - strand at 388.787 kb on - strand at 388.787 kb on - strand at 388.787 kb on - strand at 388.787 kb on - strand at 388.787 kb on - strand at 388.787 kb on - strand at 388.787 kb on - strand at 388.787 kb on - strand at 388.787 kb on - strand at 388.787 kb on - strand at 388.787 kb on - strand at 388.787 kb on - strand at 388.842 kb on + strand at 388.842 kb on + strand at 388.843 kb on - strand at 388.843 kb on - strand at 389.032 kb on + strand, within ABIE53_004214 at 389.045 kb on + strand, within ABIE53_004214 at 389.072 kb on + strand, within ABIE53_004214 at 389.103 kb on + strand, within ABIE53_004214 at 389.103 kb on + strand, within ABIE53_004214 at 389.104 kb on - strand, within ABIE53_004214 at 389.104 kb on - strand, within ABIE53_004214 at 389.104 kb on - strand, within ABIE53_004214 at 389.197 kb on - strand, within ABIE53_004214 at 389.219 kb on + strand at 389.219 kb on + strand at 389.219 kb on + strand at 389.219 kb on + strand at 389.219 kb on + strand at 389.219 kb on + strand at 389.219 kb on + strand at 389.220 kb on - strand at 389.220 kb on - strand at 389.220 kb on - strand at 389.220 kb on - strand at 389.235 kb on + strand at 389.235 kb on + strand at 389.236 kb on - strand at 389.236 kb on - strand at 389.242 kb on + strand at 389.251 kb on - strand at 389.251 kb on - strand at 389.293 kb on + strand at 389.293 kb on + strand at 389.372 kb on - strand at 389.372 kb on - strand at 389.612 kb on + strand, within ABIE53_004215 at 389.613 kb on - strand, within ABIE53_004215 at 389.704 kb on + strand, within ABIE53_004215 at 389.705 kb on - strand, within ABIE53_004215 at 389.705 kb on - strand, within ABIE53_004215 at 389.705 kb on - strand, within ABIE53_004215 at 389.705 kb on - strand, within ABIE53_004215 at 389.705 kb on - strand, within ABIE53_004215 at 389.866 kb on + strand, within ABIE53_004215 at 389.896 kb on + strand, within ABIE53_004215 at 389.896 kb on + strand, within ABIE53_004215 at 389.896 kb on + strand, within ABIE53_004215 at 389.896 kb on + strand, within ABIE53_004215 at 389.897 kb on - strand, within ABIE53_004215 at 389.897 kb on - strand, within ABIE53_004215 at 389.897 kb on - strand, within ABIE53_004215 at 389.912 kb on - strand, within ABIE53_004215 at 389.965 kb on + strand, within ABIE53_004215 at 390.070 kb on + strand, within ABIE53_004215 at 390.094 kb on + strand, within ABIE53_004215 at 390.127 kb on + strand, within ABIE53_004215 at 390.127 kb on + strand, within ABIE53_004215 at 390.127 kb on + strand, within ABIE53_004215 at 390.128 kb on - strand, within ABIE53_004215 at 390.128 kb on - strand, within ABIE53_004215 at 390.527 kb on + strand, within ABIE53_004215 at 390.608 kb on - strand, within ABIE53_004215 at 390.608 kb on - strand, within ABIE53_004215 at 390.804 kb on + strand, within ABIE53_004215 at 390.805 kb on - strand, within ABIE53_004215 at 390.967 kb on + strand, within ABIE53_004215 at 391.136 kb on + strand at 391.136 kb on + strand at 391.136 kb on + strand at 391.136 kb on + strand at 391.176 kb on - strand at 391.206 kb on + strand at 391.238 kb on - strand at 391.296 kb on - strand at 391.299 kb on + strand at 391.299 kb on + strand at 391.300 kb on - strand at 391.300 kb on - strand at 391.300 kb on - strand at 391.309 kb on + strand at 391.332 kb on + strand at 391.332 kb on + strand at 391.332 kb on + strand at 391.333 kb on - strand at 391.384 kb on - strand at 391.444 kb on + strand at 391.444 kb on + strand at 391.444 kb on + strand at 391.445 kb on - strand at 391.445 kb on - strand at 391.466 kb on + strand at 391.467 kb on - strand at 391.669 kb on - strand, within ABIE53_004216 at 391.754 kb on + strand, within ABIE53_004216 at 391.754 kb on + strand, within ABIE53_004216 at 391.754 kb on + strand, within ABIE53_004216 at 391.754 kb on + strand, within ABIE53_004216 at 391.755 kb on - strand, within ABIE53_004216 at 391.755 kb on - strand, within ABIE53_004216 at 391.755 kb on - strand, within ABIE53_004216 at 391.788 kb on - strand, within ABIE53_004216 at 391.802 kb on + strand, within ABIE53_004216 at 391.803 kb on - strand, within ABIE53_004216 at 391.803 kb on - strand, within ABIE53_004216 at 391.803 kb on - strand, within ABIE53_004216 at 391.804 kb on + strand, within ABIE53_004216 at 391.805 kb on - strand, within ABIE53_004216 at 391.805 kb on - strand, within ABIE53_004216 at 391.805 kb on - strand, within ABIE53_004216 at 391.805 kb on - strand, within ABIE53_004216 at 391.811 kb on + strand, within ABIE53_004216 at 391.857 kb on - strand, within ABIE53_004216 at 391.941 kb on - strand, within ABIE53_004216 at 391.970 kb on + strand, within ABIE53_004216 at 391.985 kb on + strand, within ABIE53_004216 at 391.985 kb on + strand, within ABIE53_004216 at 391.986 kb on - strand, within ABIE53_004216 at 391.986 kb on - strand, within ABIE53_004216 at 391.986 kb on - strand, within ABIE53_004216 at 391.986 kb on - strand, within ABIE53_004216 at 391.986 kb on - strand, within ABIE53_004216 at 391.986 kb on - strand, within ABIE53_004216 at 391.986 kb on - strand, within ABIE53_004216 at 391.986 kb on - strand, within ABIE53_004216 at 392.015 kb on + strand, within ABIE53_004216 at 392.016 kb on - strand, within ABIE53_004216 at 392.040 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 388,285 + ABIE53_004213 0.68 +0.2 388,285 + ABIE53_004213 0.68 -0.1 388,285 + ABIE53_004213 0.68 +0.2 388,285 + ABIE53_004213 0.68 +0.1 388,286 - ABIE53_004213 0.68 -0.9 388,286 - ABIE53_004213 0.68 -0.1 388,286 - ABIE53_004213 0.68 +0.1 388,286 - ABIE53_004213 0.68 +0.5 388,286 - ABIE53_004213 0.68 -0.1 388,286 - ABIE53_004213 0.68 +0.1 388,432 + ABIE53_004213 0.76 -0.1 388,468 + ABIE53_004213 0.78 +1.0 388,469 - ABIE53_004213 0.78 +0.0 388,469 - ABIE53_004213 0.78 -0.3 388,786 + +1.3 388,786 + -1.0 388,786 + -0.2 388,786 + -0.9 388,786 + -0.9 388,786 + +0.0 388,786 + -0.6 388,786 + -1.1 388,786 + -0.1 388,786 + -1.3 388,786 + -0.3 388,786 + +0.8 388,786 + +0.9 388,786 + -0.7 388,786 + -0.1 388,787 - +1.0 388,787 - -0.3 388,787 - -0.4 388,787 - +0.5 388,787 - +0.7 388,787 - -1.1 388,787 - +0.2 388,787 - +0.1 388,787 - -0.4 388,787 - +1.2 388,787 - +0.6 388,787 - -0.8 388,787 - -0.7 388,787 - +1.8 388,842 + +0.0 388,842 + -1.3 388,843 - -0.3 388,843 - +3.0 389,032 + ABIE53_004214 0.45 +1.3 389,045 + ABIE53_004214 0.48 -0.6 389,072 + ABIE53_004214 0.55 -1.1 389,103 + ABIE53_004214 0.64 +0.2 389,103 + ABIE53_004214 0.64 +0.0 389,104 - ABIE53_004214 0.64 -0.8 389,104 - ABIE53_004214 0.64 -0.4 389,104 - ABIE53_004214 0.64 -0.4 389,197 - ABIE53_004214 0.89 -0.9 389,219 + +0.2 389,219 + +1.0 389,219 + -0.1 389,219 + +0.0 389,219 + -0.0 389,219 + -1.6 389,219 + +1.5 389,220 - -1.2 389,220 - -0.4 389,220 - +1.0 389,220 - -0.1 389,235 + -0.5 389,235 + +1.3 389,236 - -0.8 389,236 - +1.3 389,242 + -0.6 389,251 - -0.7 389,251 - +0.2 389,293 + -0.7 389,293 + -0.3 389,372 - -0.9 389,372 - -0.1 389,612 + ABIE53_004215 0.18 -0.0 389,613 - ABIE53_004215 0.18 -1.8 389,704 + ABIE53_004215 0.23 -0.3 389,705 - ABIE53_004215 0.23 -1.1 389,705 - ABIE53_004215 0.23 -1.5 389,705 - ABIE53_004215 0.23 +1.5 389,705 - ABIE53_004215 0.23 -0.2 389,705 - ABIE53_004215 0.23 -0.1 389,866 + ABIE53_004215 0.31 +0.3 389,896 + ABIE53_004215 0.33 -0.5 389,896 + ABIE53_004215 0.33 +1.0 389,896 + ABIE53_004215 0.33 +1.2 389,896 + ABIE53_004215 0.33 +0.1 389,897 - ABIE53_004215 0.33 -0.8 389,897 - ABIE53_004215 0.33 -0.3 389,897 - ABIE53_004215 0.33 +0.2 389,912 - ABIE53_004215 0.34 +0.4 389,965 + ABIE53_004215 0.36 +1.5 390,070 + ABIE53_004215 0.42 -1.0 390,094 + ABIE53_004215 0.43 +0.2 390,127 + ABIE53_004215 0.45 +0.8 390,127 + ABIE53_004215 0.45 -0.9 390,127 + ABIE53_004215 0.45 +0.4 390,128 - ABIE53_004215 0.45 +0.7 390,128 - ABIE53_004215 0.45 -1.4 390,527 + ABIE53_004215 0.66 -0.3 390,608 - ABIE53_004215 0.70 -0.4 390,608 - ABIE53_004215 0.70 -0.3 390,804 + ABIE53_004215 0.80 -0.6 390,805 - ABIE53_004215 0.80 +0.0 390,967 + ABIE53_004215 0.89 -1.1 391,136 + +0.2 391,136 + -0.2 391,136 + -1.0 391,136 + +1.2 391,176 - -1.0 391,206 + +0.8 391,238 - -1.0 391,296 - +0.5 391,299 + -1.2 391,299 + -0.3 391,300 - +0.7 391,300 - -0.9 391,300 - -0.9 391,309 + -0.1 391,332 + -0.5 391,332 + +1.2 391,332 + +1.6 391,333 - +0.5 391,384 - -0.5 391,444 + -0.0 391,444 + -0.4 391,444 + -0.4 391,445 - +0.8 391,445 - -0.8 391,466 + -0.3 391,467 - -0.6 391,669 - ABIE53_004216 0.24 +0.0 391,754 + ABIE53_004216 0.39 +0.1 391,754 + ABIE53_004216 0.39 -0.2 391,754 + ABIE53_004216 0.39 -1.0 391,754 + ABIE53_004216 0.39 +1.5 391,755 - ABIE53_004216 0.39 -0.2 391,755 - ABIE53_004216 0.39 -0.2 391,755 - ABIE53_004216 0.39 -1.2 391,788 - ABIE53_004216 0.45 +2.0 391,802 + ABIE53_004216 0.48 +1.0 391,803 - ABIE53_004216 0.48 -1.4 391,803 - ABIE53_004216 0.48 -0.9 391,803 - ABIE53_004216 0.48 -0.8 391,804 + ABIE53_004216 0.48 +0.5 391,805 - ABIE53_004216 0.48 -1.2 391,805 - ABIE53_004216 0.48 -0.7 391,805 - ABIE53_004216 0.48 +0.2 391,805 - ABIE53_004216 0.48 -1.8 391,811 + ABIE53_004216 0.49 +0.2 391,857 - ABIE53_004216 0.58 +1.0 391,941 - ABIE53_004216 0.73 -0.5 391,970 + ABIE53_004216 0.78 +0.7 391,985 + ABIE53_004216 0.81 -0.7 391,985 + ABIE53_004216 0.81 -0.6 391,986 - ABIE53_004216 0.81 +0.9 391,986 - ABIE53_004216 0.81 -2.6 391,986 - ABIE53_004216 0.81 -2.2 391,986 - ABIE53_004216 0.81 +1.0 391,986 - ABIE53_004216 0.81 -0.2 391,986 - ABIE53_004216 0.81 +0.9 391,986 - ABIE53_004216 0.81 +0.0 391,986 - ABIE53_004216 0.81 +1.0 392,015 + ABIE53_004216 0.86 +1.3 392,016 - ABIE53_004216 0.87 -0.1 392,040 - -0.3
Or see this region's nucleotide sequence