Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001984

Experiment: D-Serine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Serine (C)
2,230,937	+		ABIE53_001982	0.76	+0.1
2,230,938	-		ABIE53_001982	0.76	+1.4
2,230,938	-		ABIE53_001982	0.76	-0.5
2,230,973	+		ABIE53_001982	0.80	+0.6
2,230,973	+		ABIE53_001982	0.80	-0.5
2,230,974	-		ABIE53_001982	0.80	+0.4
2,230,974	-		ABIE53_001982	0.80	+0.1
2,231,243	+				-0.3
2,231,243	+				+0.1
2,231,243	+				-0.8
2,231,243	+				-1.1
2,231,243	+				-1.6
2,231,243	+				+0.7
2,231,243	+				-1.4
2,231,243	+				-0.2
2,231,243	+				-1.5
2,231,244	-				-0.8
2,231,244	-				+0.2
2,231,244	-				+2.9
2,231,244	-				-0.5
2,231,260	+				-1.4
2,231,260	+				+0.2
2,231,261	-				-0.5
2,231,277	+				-0.8
2,231,277	+				+1.1
2,231,277	+				+0.9
2,231,278	-				-0.7
2,231,291	+				-0.6
2,231,291	+				+0.1
2,231,291	+				-0.6
2,231,291	+				-0.7
2,231,291	+				+0.4
2,231,291	+				-2.8
2,231,292	-				-0.8
2,231,292	-				-0.7
2,231,292	-				+0.6
2,231,292	-				+0.1
2,231,542	+		ABIE53_001983	0.34	-2.4
2,231,543	-		ABIE53_001983	0.35	-0.5
2,231,543	-		ABIE53_001983	0.35	-2.1
2,231,543	-		ABIE53_001983	0.35	-0.1
2,231,580	+		ABIE53_001983	0.43	-0.5
2,231,580	+		ABIE53_001983	0.43	-1.4
2,231,580	+		ABIE53_001983	0.43	-1.5
2,231,581	-		ABIE53_001983	0.43	-0.2
2,231,581	-		ABIE53_001983	0.43	+0.6
2,231,581	-		ABIE53_001983	0.43	-0.8
2,231,777	+				-0.3
2,231,903	-				+0.6
2,231,959	+				-1.2
2,231,960	-				-0.9
2,231,993	+		ABIE53_001984	0.11	+0.1
2,232,054	+		ABIE53_001984	0.18	+2.4
2,232,054	+		ABIE53_001984	0.18	-1.4
2,232,054	+		ABIE53_001984	0.18	+0.2
2,232,054	+		ABIE53_001984	0.18	+0.1
2,232,054	+		ABIE53_001984	0.18	-0.2
2,232,054	+		ABIE53_001984	0.18	-0.7
2,232,055	-		ABIE53_001984	0.19	+0.6
2,232,055	-		ABIE53_001984	0.19	-0.3
2,232,055	-		ABIE53_001984	0.19	+1.9
2,232,055	-		ABIE53_001984	0.19	+0.2
2,232,149	-		ABIE53_001984	0.30	-0.8
2,232,149	-		ABIE53_001984	0.30	+0.4
2,232,166	+		ABIE53_001984	0.32	+0.5
2,232,225	+		ABIE53_001984	0.39	-1.1
2,232,225	+		ABIE53_001984	0.39	-0.4
2,232,225	+		ABIE53_001984	0.39	+0.4
2,232,225	+		ABIE53_001984	0.39	-0.8
2,232,225	+		ABIE53_001984	0.39	+0.7
2,232,226	-		ABIE53_001984	0.39	-0.4
2,232,402	+		ABIE53_001984	0.61	-1.5
2,232,402	+		ABIE53_001984	0.61	+0.8
2,232,402	+		ABIE53_001984	0.61	-1.0
2,232,403	-		ABIE53_001984	0.61	-0.0
2,232,403	-		ABIE53_001984	0.61	+2.2
2,232,403	-		ABIE53_001984	0.61	+0.5
2,232,403	-		ABIE53_001984	0.61	-0.0
2,232,403	-		ABIE53_001984	0.61	-0.3
2,232,403	-		ABIE53_001984	0.61	-0.7
2,232,427	+		ABIE53_001984	0.64	-0.5
2,232,427	+		ABIE53_001984	0.64	-0.2
2,232,427	+		ABIE53_001984	0.64	-0.6
2,232,427	+		ABIE53_001984	0.64	+1.1
2,232,427	+		ABIE53_001984	0.64	+2.1
2,232,428	-		ABIE53_001984	0.64	-0.2
2,232,428	-		ABIE53_001984	0.64	-0.3
2,232,428	-		ABIE53_001984	0.64	-0.6
2,232,496	+		ABIE53_001984	0.72	-1.8
2,232,496	+		ABIE53_001984	0.72	+1.6
2,232,496	+		ABIE53_001984	0.72	-0.3
2,232,496	+		ABIE53_001984	0.72	-0.2
2,232,496	+		ABIE53_001984	0.72	+1.9
2,232,496	+		ABIE53_001984	0.72	-1.5
2,232,496	+		ABIE53_001984	0.72	-0.3
2,232,497	-		ABIE53_001984	0.72	+0.3
2,232,497	-		ABIE53_001984	0.72	-0.6
2,232,497	-		ABIE53_001984	0.72	-0.9
2,232,497	-		ABIE53_001984	0.72	+1.4
2,232,497	-		ABIE53_001984	0.72	-0.3
2,232,497	-		ABIE53_001984	0.72	-1.3
2,232,497	-		ABIE53_001984	0.72	-0.5
2,232,497	-		ABIE53_001984	0.72	-0.5
2,232,497	-		ABIE53_001984	0.72	+2.3
2,232,554	+		ABIE53_001984	0.79	-0.7
2,232,556	+		ABIE53_001984	0.79	-0.9
2,232,556	+		ABIE53_001984	0.79	+0.5
2,232,556	+		ABIE53_001984	0.79	+0.4
2,232,556	+		ABIE53_001984	0.79	+0.6
2,232,556	+		ABIE53_001984	0.79	-1.4
2,232,556	+		ABIE53_001984	0.79	-0.6
2,232,556	+		ABIE53_001984	0.79	+0.4
2,232,556	+		ABIE53_001984	0.79	+0.0
2,232,557	-		ABIE53_001984	0.79	-1.3
2,232,557	-		ABIE53_001984	0.79	-2.2
2,232,557	-		ABIE53_001984	0.79	+0.4
2,232,557	-		ABIE53_001984	0.79	-2.0
2,232,557	-		ABIE53_001984	0.79	+0.1
2,232,557	-		ABIE53_001984	0.79	-0.0
2,232,557	-		ABIE53_001984	0.79	-1.4
2,232,557	-		ABIE53_001984	0.79	-0.5
2,232,557	-		ABIE53_001984	0.79	-1.1
2,232,557	-		ABIE53_001984	0.79	+1.1
2,232,619	+		ABIE53_001984	0.87	+0.7
2,232,619	+		ABIE53_001984	0.87	+0.1
2,232,619	+		ABIE53_001984	0.87	+0.9
2,232,620	-		ABIE53_001984	0.87	+1.6
2,232,620	-		ABIE53_001984	0.87	+0.6
2,232,620	-		ABIE53_001984	0.87	+0.0
2,232,620	-		ABIE53_001984	0.87	-0.6
2,232,620	-		ABIE53_001984	0.87	-0.6
2,232,712	+				+1.3
2,232,713	-				-0.2
2,232,765	+				-0.2
2,232,765	+				+0.4
2,232,765	+				-0.5
2,232,765	+				+0.9
2,232,765	+				-0.3
2,232,766	-				-0.1
2,232,766	-				+0.9
2,232,766	-				+1.4
2,232,766	-				-0.1
2,232,872	-				-0.5
2,232,872	-				-1.4
2,233,113	+		ABIE53_001985	0.33	+1.5
2,233,114	-		ABIE53_001985	0.33	+0.3
2,233,114	-		ABIE53_001985	0.33	-0.2
2,233,405	+		ABIE53_001985	0.64	+0.5
2,233,405	+		ABIE53_001985	0.64	-1.1
2,233,405	+		ABIE53_001985	0.64	+0.7
2,233,406	-		ABIE53_001985	0.65	+1.2
2,233,659	+				-0.2
2,233,659	+				+1.9
2,233,659	+				+0.0
2,233,660	-				-1.0
2,233,660	-				+0.7
2,233,660	-				+1.9
2,233,660	-				-1.0