Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3111

Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3110 and DvMF_3111 are separated by 248 nucleotidesDvMF_3111 and DvMF_3112 are separated by 192 nucleotidesDvMF_3112 and DvMF_3113 are separated by 34 nucleotides DvMF_3110: DvMF_3110 - no description, at 3,923,002 to 3,923,571 _3110 DvMF_3111: DvMF_3111 - MATE efflux family protein (RefSeq), at 3,923,820 to 3,925,289 _3111 DvMF_3112: DvMF_3112 - protein of unknown function DUF77 (RefSeq), at 3,925,482 to 3,925,784 _3112 DvMF_3113: DvMF_3113 - protein of unknown function DUF115 (RefSeq), at 3,925,819 to 3,927,588 _3113 Position (kb) 3923 3924 3925 3926Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3923.563 kb on - strandat 3923.563 kb on - strandat 3923.601 kb on + strandat 3923.721 kb on + strandat 3923.821 kb on - strandat 3923.883 kb on + strandat 3923.939 kb on - strandat 3924.114 kb on - strand, within DvMF_3111at 3924.118 kb on + strand, within DvMF_3111at 3924.744 kb on - strand, within DvMF_3111at 3925.283 kb on + strandat 3925.487 kb on - strandat 3925.573 kb on - strand, within DvMF_3112at 3925.876 kb on - strandat 3925.977 kb on + strandat 3926.055 kb on + strand, within DvMF_3113at 3926.094 kb on - strand, within DvMF_3113at 3926.166 kb on + strand, within DvMF_3113at 3926.256 kb on - strand, within DvMF_3113at 3926.287 kb on - strand, within DvMF_3113

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml
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3,923,563 - -1.3
3,923,563 - -0.0
3,923,601 + -1.3
3,923,721 + -1.8
3,923,821 - -0.1
3,923,883 + -1.7
3,923,939 - +1.3
3,924,114 - DvMF_3111 0.20 +0.1
3,924,118 + DvMF_3111 0.20 +0.9
3,924,744 - DvMF_3111 0.63 -1.1
3,925,283 + -0.5
3,925,487 - -0.7
3,925,573 - DvMF_3112 0.30 +0.2
3,925,876 - -0.9
3,925,977 + +0.1
3,926,055 + DvMF_3113 0.13 +0.3
3,926,094 - DvMF_3113 0.16 -1.1
3,926,166 + DvMF_3113 0.20 -0.8
3,926,256 - DvMF_3113 0.25 -3.8
3,926,287 - DvMF_3113 0.26 -1.0

Or see this region's nucleotide sequence