Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2808

Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2807 and DvMF_2808 are separated by 4 nucleotidesDvMF_2808 and DvMF_2809 are separated by 187 nucleotides DvMF_2807: DvMF_2807 - major facilitator superfamily MFS_1 (RefSeq), at 3,549,856 to 3,551,100 _2807 DvMF_2808: DvMF_2808 - metal dependent phosphohydrolase (RefSeq), at 3,551,105 to 3,551,647 _2808 DvMF_2809: DvMF_2809 - aminotransferase class V (RefSeq), at 3,551,835 to 3,552,938 _2809 Position (kb) 3551 3552Strain fitness (log2 ratio) -2 -1 0 1at 3550.262 kb on - strand, within DvMF_2807at 3550.348 kb on - strand, within DvMF_2807at 3550.548 kb on - strand, within DvMF_2807at 3550.560 kb on - strand, within DvMF_2807at 3550.641 kb on + strand, within DvMF_2807at 3550.682 kb on - strand, within DvMF_2807at 3550.715 kb on + strand, within DvMF_2807at 3550.752 kb on + strand, within DvMF_2807at 3550.905 kb on + strand, within DvMF_2807at 3551.268 kb on + strand, within DvMF_2808at 3551.327 kb on - strand, within DvMF_2808at 3551.357 kb on + strand, within DvMF_2808at 3551.576 kb on - strand, within DvMF_2808at 3551.658 kb on + strandat 3551.666 kb on - strandat 3551.666 kb on - strandat 3551.838 kb on + strandat 3552.000 kb on + strand, within DvMF_2809at 3552.125 kb on + strand, within DvMF_2809at 3552.138 kb on - strand, within DvMF_2809at 3552.249 kb on - strand, within DvMF_2809at 3552.293 kb on - strand, within DvMF_2809at 3552.459 kb on - strand, within DvMF_2809at 3552.506 kb on + strand, within DvMF_2809at 3552.523 kb on + strand, within DvMF_2809at 3552.524 kb on - strand, within DvMF_2809

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml
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3,550,262 - DvMF_2807 0.33 -1.1
3,550,348 - DvMF_2807 0.40 -0.6
3,550,548 - DvMF_2807 0.56 -0.4
3,550,560 - DvMF_2807 0.57 -0.8
3,550,641 + DvMF_2807 0.63 +0.3
3,550,682 - DvMF_2807 0.66 -0.9
3,550,715 + DvMF_2807 0.69 -0.9
3,550,752 + DvMF_2807 0.72 -0.7
3,550,905 + DvMF_2807 0.84 -0.6
3,551,268 + DvMF_2808 0.30 -0.8
3,551,327 - DvMF_2808 0.41 -1.0
3,551,357 + DvMF_2808 0.46 -0.9
3,551,576 - DvMF_2808 0.87 -1.4
3,551,658 + -0.1
3,551,666 - -1.5
3,551,666 - -0.5
3,551,838 + -0.6
3,552,000 + DvMF_2809 0.15 -0.5
3,552,125 + DvMF_2809 0.26 -1.9
3,552,138 - DvMF_2809 0.27 -0.5
3,552,249 - DvMF_2809 0.38 +1.1
3,552,293 - DvMF_2809 0.41 -0.1
3,552,459 - DvMF_2809 0.57 -0.5
3,552,506 + DvMF_2809 0.61 +0.2
3,552,523 + DvMF_2809 0.62 -0.7
3,552,524 - DvMF_2809 0.62 -1.1

Or see this region's nucleotide sequence