Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2717

Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2716 and DvMF_2717 are separated by 617 nucleotidesDvMF_2717 and DvMF_2718 are separated by 524 nucleotides DvMF_2716: DvMF_2716 - hypothetical protein (RefSeq), at 3,439,055 to 3,439,375 _2716 DvMF_2717: DvMF_2717 - GTP-binding protein LepA (RefSeq), at 3,439,993 to 3,441,798 _2717 DvMF_2718: DvMF_2718 - signal peptidase I (RefSeq), at 3,442,323 to 3,442,919 _2718 Position (kb) 3439 3440 3441 3442Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3438.995 kb on - strandat 3439.032 kb on + strandat 3439.097 kb on + strand, within DvMF_2716at 3439.231 kb on - strand, within DvMF_2716at 3439.317 kb on + strand, within DvMF_2716at 3439.526 kb on - strandat 3439.714 kb on + strandat 3439.742 kb on + strandat 3439.747 kb on + strandat 3439.747 kb on + strandat 3439.771 kb on + strandat 3439.777 kb on + strandat 3439.936 kb on - strandat 3440.002 kb on + strandat 3440.809 kb on - strand, within DvMF_2717at 3440.990 kb on + strand, within DvMF_2717at 3441.198 kb on + strand, within DvMF_2717at 3441.401 kb on - strand, within DvMF_2717at 3442.000 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml
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3,438,995 - -0.6
3,439,032 + -0.4
3,439,097 + DvMF_2716 0.13 -1.5
3,439,231 - DvMF_2716 0.55 -0.6
3,439,317 + DvMF_2716 0.82 -2.3
3,439,526 - -0.4
3,439,714 + -0.8
3,439,742 + +0.3
3,439,747 + -1.0
3,439,747 + -0.2
3,439,771 + -0.6
3,439,777 + -3.2
3,439,936 - -0.8
3,440,002 + +1.1
3,440,809 - DvMF_2717 0.45 +0.3
3,440,990 + DvMF_2717 0.55 +2.4
3,441,198 + DvMF_2717 0.67 -0.8
3,441,401 - DvMF_2717 0.78 -0.6
3,442,000 + +0.2

Or see this region's nucleotide sequence