Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2587 and DvMF_2588 are separated by 77 nucleotides DvMF_2588 and DvMF_2589 are separated by 236 nucleotides DvMF_2589 and DvMF_2590 are separated by 595 nucleotides
DvMF_2587: DvMF_2587 - maf protein (RefSeq), at 3,272,312 to 3,272,962
_2587
DvMF_2588: DvMF_2588 - phosphatidylglycerophosphatase A (RefSeq), at 3,273,040 to 3,273,564
_2588
DvMF_2589: DvMF_2589 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 3,273,801 to 3,274,532
_2589
DvMF_2590: DvMF_2590 - response regulator receiver protein (RefSeq), at 3,275,128 to 3,275,523
_2590
Position (kb)
3273
3274
3275 Strain fitness (log2 ratio)
-2
-1
0
1 at 3272.961 kb on + strand at 3272.961 kb on + strand at 3273.576 kb on - strand at 3273.610 kb on + strand at 3274.189 kb on - strand, within DvMF_2589 at 3274.282 kb on + strand, within DvMF_2589 at 3274.331 kb on + strand, within DvMF_2589 at 3274.415 kb on + strand, within DvMF_2589 at 3274.433 kb on + strand, within DvMF_2589 at 3274.433 kb on + strand, within DvMF_2589 at 3274.433 kb on + strand, within DvMF_2589 at 3274.441 kb on - strand, within DvMF_2589 at 3274.523 kb on - strand at 3274.603 kb on - strand at 3274.653 kb on - strand at 3274.754 kb on - strand at 3274.885 kb on + strand at 3275.145 kb on + strand at 3275.145 kb on + strand at 3275.145 kb on + strand at 3275.317 kb on - strand, within DvMF_2590
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml remove 3,272,961 + -0.1 3,272,961 + -0.3 3,273,576 - -1.3 3,273,610 + +0.5 3,274,189 - DvMF_2589 0.53 -0.3 3,274,282 + DvMF_2589 0.66 -0.8 3,274,331 + DvMF_2589 0.72 -0.5 3,274,415 + DvMF_2589 0.84 -0.1 3,274,433 + DvMF_2589 0.86 -0.2 3,274,433 + DvMF_2589 0.86 -0.9 3,274,433 + DvMF_2589 0.86 +1.2 3,274,441 - DvMF_2589 0.87 -0.3 3,274,523 - -1.1 3,274,603 - -0.5 3,274,653 - -0.3 3,274,754 - -0.0 3,274,885 + -0.4 3,275,145 + -0.5 3,275,145 + -2.6 3,275,145 + -1.0 3,275,317 - DvMF_2590 0.48 -0.6
Or see this region's nucleotide sequence