Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2545

Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2544 and DvMF_2545 are separated by 337 nucleotidesDvMF_2545 and DvMF_2546 are separated by 269 nucleotides DvMF_2544: DvMF_2544 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,214,962 to 3,216,506 _2544 DvMF_2545: DvMF_2545 - metal dependent phosphohydrolase (RefSeq), at 3,216,844 to 3,217,653 _2545 DvMF_2546: DvMF_2546 - transcriptional regulator, BadM/Rrf2 family (RefSeq), at 3,217,923 to 3,218,381 _2546 Position (kb) 3216 3217 3218Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3215.898 kb on + strand, within DvMF_2544at 3215.908 kb on + strand, within DvMF_2544at 3216.155 kb on + strand, within DvMF_2544at 3216.159 kb on - strand, within DvMF_2544at 3216.160 kb on + strand, within DvMF_2544at 3216.204 kb on - strand, within DvMF_2544at 3216.213 kb on + strand, within DvMF_2544at 3216.218 kb on + strand, within DvMF_2544at 3216.221 kb on - strand, within DvMF_2544at 3216.221 kb on - strand, within DvMF_2544at 3216.226 kb on - strand, within DvMF_2544at 3216.261 kb on + strand, within DvMF_2544at 3216.358 kb on + strandat 3216.358 kb on + strandat 3216.402 kb on - strandat 3216.446 kb on - strandat 3216.565 kb on + strandat 3216.668 kb on + strandat 3216.874 kb on - strandat 3216.907 kb on + strandat 3216.930 kb on - strand, within DvMF_2545at 3217.027 kb on + strand, within DvMF_2545at 3217.103 kb on + strand, within DvMF_2545at 3217.120 kb on + strand, within DvMF_2545at 3217.120 kb on + strand, within DvMF_2545at 3217.888 kb on - strandat 3217.969 kb on + strand, within DvMF_2546at 3217.987 kb on - strand, within DvMF_2546at 3218.227 kb on + strand, within DvMF_2546at 3218.303 kb on + strand, within DvMF_2546at 3218.338 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml
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3,215,898 + DvMF_2544 0.61 -0.6
3,215,908 + DvMF_2544 0.61 -1.9
3,216,155 + DvMF_2544 0.77 -0.3
3,216,159 - DvMF_2544 0.77 -0.5
3,216,160 + DvMF_2544 0.78 -1.0
3,216,204 - DvMF_2544 0.80 -1.4
3,216,213 + DvMF_2544 0.81 +0.6
3,216,218 + DvMF_2544 0.81 -1.3
3,216,221 - DvMF_2544 0.81 -3.3
3,216,221 - DvMF_2544 0.81 -0.3
3,216,226 - DvMF_2544 0.82 -0.5
3,216,261 + DvMF_2544 0.84 -0.4
3,216,358 + -0.1
3,216,358 + +0.2
3,216,402 - -0.2
3,216,446 - -0.9
3,216,565 + -1.1
3,216,668 + -1.7
3,216,874 - -2.5
3,216,907 + -2.1
3,216,930 - DvMF_2545 0.11 -0.9
3,217,027 + DvMF_2545 0.23 -1.6
3,217,103 + DvMF_2545 0.32 -0.5
3,217,120 + DvMF_2545 0.34 -0.4
3,217,120 + DvMF_2545 0.34 +0.0
3,217,888 - +0.7
3,217,969 + DvMF_2546 0.10 +0.5
3,217,987 - DvMF_2546 0.14 -0.5
3,218,227 + DvMF_2546 0.66 +0.2
3,218,303 + DvMF_2546 0.83 +0.4
3,218,338 - -3.8

Or see this region's nucleotide sequence