Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2416 and DvMF_2417 are separated by 2 nucleotides DvMF_2417 and DvMF_2418 overlap by 4 nucleotides DvMF_2418 and DvMF_2419 overlap by 4 nucleotides DvMF_2419 and DvMF_2420 are separated by 561 nucleotides
DvMF_2416: DvMF_2416 - Tetratricopeptide TPR_4 (RefSeq), at 3,055,499 to 3,055,858
_2416
DvMF_2417: DvMF_2417 - hypothetical protein (RefSeq), at 3,055,861 to 3,056,229
_2417
DvMF_2418: DvMF_2418 - type III secretion chaperone SycN (RefSeq), at 3,056,226 to 3,056,627
_2418
DvMF_2419: DvMF_2419 - type III secretion regulator YopN/LcrE/InvE/MxiC (RefSeq), at 3,056,624 to 3,057,763
_2419
DvMF_2420: DvMF_2420 - hypothetical protein (RefSeq), at 3,058,325 to 3,058,621
_2420
Position (kb)
3056
3057
3058 Strain fitness (log2 ratio)
-2
-1
0
1 at 3055.624 kb on - strand, within DvMF_2416 at 3055.624 kb on - strand, within DvMF_2416 at 3055.858 kb on + strand at 3055.886 kb on - strand at 3055.964 kb on + strand, within DvMF_2417 at 3056.000 kb on + strand, within DvMF_2417 at 3056.095 kb on - strand, within DvMF_2417 at 3056.371 kb on + strand, within DvMF_2418 at 3056.379 kb on - strand, within DvMF_2418 at 3056.508 kb on + strand, within DvMF_2418 at 3056.573 kb on + strand, within DvMF_2418 at 3056.577 kb on + strand, within DvMF_2418 at 3056.592 kb on - strand at 3056.686 kb on - strand at 3056.808 kb on + strand, within DvMF_2419 at 3056.808 kb on + strand, within DvMF_2419 at 3056.816 kb on - strand, within DvMF_2419 at 3056.816 kb on - strand, within DvMF_2419 at 3056.816 kb on - strand, within DvMF_2419 at 3056.816 kb on - strand, within DvMF_2419 at 3057.006 kb on - strand, within DvMF_2419 at 3057.104 kb on + strand, within DvMF_2419 at 3057.230 kb on - strand, within DvMF_2419 at 3057.281 kb on - strand, within DvMF_2419 at 3057.423 kb on + strand, within DvMF_2419 at 3057.604 kb on - strand, within DvMF_2419 at 3057.722 kb on + strand at 3057.997 kb on + strand at 3058.508 kb on + strand, within DvMF_2420
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml remove 3,055,624 - DvMF_2416 0.35 -0.2 3,055,624 - DvMF_2416 0.35 +0.2 3,055,858 + -0.9 3,055,886 - -0.2 3,055,964 + DvMF_2417 0.28 -0.5 3,056,000 + DvMF_2417 0.38 -1.1 3,056,095 - DvMF_2417 0.63 -1.0 3,056,371 + DvMF_2418 0.36 -2.3 3,056,379 - DvMF_2418 0.38 +0.6 3,056,508 + DvMF_2418 0.70 -0.0 3,056,573 + DvMF_2418 0.86 -0.3 3,056,577 + DvMF_2418 0.87 +0.5 3,056,592 - -0.5 3,056,686 - -0.2 3,056,808 + DvMF_2419 0.16 -0.6 3,056,808 + DvMF_2419 0.16 -1.2 3,056,816 - DvMF_2419 0.17 +0.1 3,056,816 - DvMF_2419 0.17 -0.1 3,056,816 - DvMF_2419 0.17 -0.3 3,056,816 - DvMF_2419 0.17 -0.2 3,057,006 - DvMF_2419 0.34 -0.4 3,057,104 + DvMF_2419 0.42 -0.7 3,057,230 - DvMF_2419 0.53 -0.9 3,057,281 - DvMF_2419 0.58 -0.2 3,057,423 + DvMF_2419 0.70 +0.2 3,057,604 - DvMF_2419 0.86 -0.7 3,057,722 + -1.1 3,057,997 + -0.5 3,058,508 + DvMF_2420 0.62 -0.3
Or see this region's nucleotide sequence