Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2410

Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2409 and DvMF_2410 are separated by 296 nucleotidesDvMF_2410 and DvMF_2411 are separated by 15 nucleotides DvMF_2409: DvMF_2409 - hypothetical protein (RefSeq), at 3,045,843 to 3,047,543 _2409 DvMF_2410: DvMF_2410 - protein serine/threonine phosphatase (RefSeq), at 3,047,840 to 3,049,822 _2410 DvMF_2411: DvMF_2411 - sigma54 specific transcriptional regulator, Fis family (RefSeq), at 3,049,838 to 3,051,172 _2411 Position (kb) 3047 3048 3049 3050Strain fitness (log2 ratio) -2 -1 0 1at 3047.052 kb on + strand, within DvMF_2409at 3047.578 kb on + strandat 3047.586 kb on - strandat 3048.085 kb on - strand, within DvMF_2410at 3048.296 kb on + strand, within DvMF_2410at 3048.296 kb on + strand, within DvMF_2410at 3048.346 kb on + strand, within DvMF_2410at 3048.368 kb on - strand, within DvMF_2410at 3048.926 kb on + strand, within DvMF_2410at 3049.566 kb on + strand, within DvMF_2410at 3049.592 kb on + strand, within DvMF_2410at 3049.729 kb on + strandat 3049.738 kb on + strandat 3049.810 kb on + strandat 3050.177 kb on - strand, within DvMF_2411at 3050.227 kb on + strand, within DvMF_2411at 3050.269 kb on - strand, within DvMF_2411at 3050.295 kb on + strand, within DvMF_2411at 3050.460 kb on + strand, within DvMF_2411at 3050.542 kb on + strand, within DvMF_2411at 3050.696 kb on + strand, within DvMF_2411

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml
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3,047,052 + DvMF_2409 0.71 -0.4
3,047,578 + -0.8
3,047,586 - -0.7
3,048,085 - DvMF_2410 0.12 -0.6
3,048,296 + DvMF_2410 0.23 +0.1
3,048,296 + DvMF_2410 0.23 -1.4
3,048,346 + DvMF_2410 0.26 -1.6
3,048,368 - DvMF_2410 0.27 -1.0
3,048,926 + DvMF_2410 0.55 -1.7
3,049,566 + DvMF_2410 0.87 -0.7
3,049,592 + DvMF_2410 0.88 -2.6
3,049,729 + -1.0
3,049,738 + -0.8
3,049,810 + -0.5
3,050,177 - DvMF_2411 0.25 -0.4
3,050,227 + DvMF_2411 0.29 -0.2
3,050,269 - DvMF_2411 0.32 -1.2
3,050,295 + DvMF_2411 0.34 -0.2
3,050,460 + DvMF_2411 0.47 +0.3
3,050,542 + DvMF_2411 0.53 -0.2
3,050,696 + DvMF_2411 0.64 -1.3

Or see this region's nucleotide sequence