Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2401 and DvMF_2402 are separated by 418 nucleotides DvMF_2402 and DvMF_2403 are separated by 598 nucleotides DvMF_2403 and DvMF_2404 are separated by 131 nucleotides
DvMF_2401: DvMF_2401 - nickel transporter permease NikB (RefSeq), at 3,034,090 to 3,035,031
_2401
DvMF_2402: DvMF_2402 - nickel ABC transporter, periplasmic nickel-binding protein (RefSeq), at 3,035,450 to 3,037,066
_2402
DvMF_2403: DvMF_2403 - TOBE domain protein (RefSeq), at 3,037,665 to 3,037,874
_2403
DvMF_2404: DvMF_2404 - protein of unknown function DUF1105 (RefSeq), at 3,038,006 to 3,038,593
_2404
Position (kb)
3035
3036
3037
3038 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3034.495 kb on + strand, within DvMF_2401 at 3035.151 kb on + strand at 3035.151 kb on + strand at 3035.603 kb on - strand at 3035.743 kb on - strand, within DvMF_2402 at 3035.899 kb on + strand, within DvMF_2402 at 3035.924 kb on - strand, within DvMF_2402 at 3036.128 kb on + strand, within DvMF_2402 at 3036.145 kb on + strand, within DvMF_2402 at 3036.279 kb on - strand, within DvMF_2402 at 3036.374 kb on - strand, within DvMF_2402 at 3036.388 kb on + strand, within DvMF_2402 at 3036.610 kb on + strand, within DvMF_2402 at 3037.012 kb on + strand at 3037.475 kb on + strand at 3037.564 kb on - strand at 3037.671 kb on - strand at 3037.686 kb on - strand, within DvMF_2403 at 3037.770 kb on + strand, within DvMF_2403 at 3037.802 kb on - strand, within DvMF_2403 at 3038.028 kb on - strand at 3038.028 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml remove 3,034,495 + DvMF_2401 0.43 -0.3 3,035,151 + -0.3 3,035,151 + -0.5 3,035,603 - +2.7 3,035,743 - DvMF_2402 0.18 +2.1 3,035,899 + DvMF_2402 0.28 -0.6 3,035,924 - DvMF_2402 0.29 +2.0 3,036,128 + DvMF_2402 0.42 +0.9 3,036,145 + DvMF_2402 0.43 +1.4 3,036,279 - DvMF_2402 0.51 +1.8 3,036,374 - DvMF_2402 0.57 +2.0 3,036,388 + DvMF_2402 0.58 -0.9 3,036,610 + DvMF_2402 0.72 -2.1 3,037,012 + -0.1 3,037,475 + -2.7 3,037,564 - -2.0 3,037,671 - -0.9 3,037,686 - DvMF_2403 0.10 -1.2 3,037,770 + DvMF_2403 0.50 -1.1 3,037,802 - DvMF_2403 0.65 +0.0 3,038,028 - -0.7 3,038,028 - -1.6
Or see this region's nucleotide sequence