Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2379 and DvMF_2380 are separated by 19 nucleotides DvMF_2380 and DvMF_2381 are separated by 236 nucleotides DvMF_2381 and DvMF_2382 are separated by 542 nucleotides
DvMF_2379: DvMF_2379 - ABC transporter related (RefSeq), at 3,005,797 to 3,007,779
_2379
DvMF_2380: DvMF_2380 - NUDIX hydrolase (RefSeq), at 3,007,799 to 3,008,308
_2380
DvMF_2381: DvMF_2381 - protein of unknown function DUF606 (RefSeq), at 3,008,545 to 3,008,985
_2381
DvMF_2382: DvMF_2382 - aspartate-semialdehyde dehydrogenase (RefSeq), at 3,009,528 to 3,010,577
_2382
Position (kb)
3008
3009 Strain fitness (log2 ratio)
-1
0
1 at 3007.590 kb on + strand at 3007.601 kb on + strand at 3007.664 kb on - strand at 3007.781 kb on - strand at 3008.025 kb on + strand, within DvMF_2380 at 3008.146 kb on - strand, within DvMF_2380 at 3008.186 kb on - strand, within DvMF_2380 at 3008.278 kb on - strand at 3008.282 kb on + strand at 3008.290 kb on - strand at 3008.561 kb on + strand at 3008.585 kb on + strand at 3008.593 kb on - strand, within DvMF_2381 at 3008.633 kb on + strand, within DvMF_2381 at 3008.831 kb on - strand, within DvMF_2381 at 3008.903 kb on + strand, within DvMF_2381 at 3009.020 kb on - strand at 3009.080 kb on - strand at 3009.245 kb on + strand at 3009.458 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml remove 3,007,590 + +0.0 3,007,601 + +0.7 3,007,664 - -0.3 3,007,781 - +0.2 3,008,025 + DvMF_2380 0.44 -0.4 3,008,146 - DvMF_2380 0.68 -0.5 3,008,186 - DvMF_2380 0.76 -0.8 3,008,278 - -1.6 3,008,282 + -0.1 3,008,290 - -0.1 3,008,561 + -0.4 3,008,585 + +0.5 3,008,593 - DvMF_2381 0.11 +0.5 3,008,633 + DvMF_2381 0.20 +0.1 3,008,831 - DvMF_2381 0.65 -1.1 3,008,903 + DvMF_2381 0.81 -0.3 3,009,020 - -0.0 3,009,080 - -1.6 3,009,245 + -0.4 3,009,458 - +0.0
Or see this region's nucleotide sequence