Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2381

Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2379 and DvMF_2380 are separated by 19 nucleotidesDvMF_2380 and DvMF_2381 are separated by 236 nucleotidesDvMF_2381 and DvMF_2382 are separated by 542 nucleotides DvMF_2379: DvMF_2379 - ABC transporter related (RefSeq), at 3,005,797 to 3,007,779 _2379 DvMF_2380: DvMF_2380 - NUDIX hydrolase (RefSeq), at 3,007,799 to 3,008,308 _2380 DvMF_2381: DvMF_2381 - protein of unknown function DUF606 (RefSeq), at 3,008,545 to 3,008,985 _2381 DvMF_2382: DvMF_2382 - aspartate-semialdehyde dehydrogenase (RefSeq), at 3,009,528 to 3,010,577 _2382 Position (kb) 3008 3009Strain fitness (log2 ratio) -1 0 1at 3007.590 kb on + strandat 3007.601 kb on + strandat 3007.664 kb on - strandat 3007.781 kb on - strandat 3008.025 kb on + strand, within DvMF_2380at 3008.146 kb on - strand, within DvMF_2380at 3008.186 kb on - strand, within DvMF_2380at 3008.278 kb on - strandat 3008.282 kb on + strandat 3008.290 kb on - strandat 3008.561 kb on + strandat 3008.585 kb on + strandat 3008.593 kb on - strand, within DvMF_2381at 3008.633 kb on + strand, within DvMF_2381at 3008.831 kb on - strand, within DvMF_2381at 3008.903 kb on + strand, within DvMF_2381at 3009.020 kb on - strandat 3009.080 kb on - strandat 3009.245 kb on + strandat 3009.458 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml
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3,007,590 + +0.0
3,007,601 + +0.7
3,007,664 - -0.3
3,007,781 - +0.2
3,008,025 + DvMF_2380 0.44 -0.4
3,008,146 - DvMF_2380 0.68 -0.5
3,008,186 - DvMF_2380 0.76 -0.8
3,008,278 - -1.6
3,008,282 + -0.1
3,008,290 - -0.1
3,008,561 + -0.4
3,008,585 + +0.5
3,008,593 - DvMF_2381 0.11 +0.5
3,008,633 + DvMF_2381 0.20 +0.1
3,008,831 - DvMF_2381 0.65 -1.1
3,008,903 + DvMF_2381 0.81 -0.3
3,009,020 - -0.0
3,009,080 - -1.6
3,009,245 + -0.4
3,009,458 - +0.0

Or see this region's nucleotide sequence