Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2366 and DvMF_2367 are separated by 473 nucleotides DvMF_2367 and DvMF_2368 are separated by 102 nucleotides DvMF_2368 and DvMF_2369 are separated by 142 nucleotides
DvMF_2366: DvMF_2366 - ferric uptake regulator, Fur family (RefSeq), at 2,987,218 to 2,987,613
_2366
DvMF_2367: DvMF_2367 - Rubrerythrin (RefSeq), at 2,988,087 to 2,988,662
_2367
DvMF_2368: DvMF_2368 - Rubredoxin-type Fe(Cys)4 protein (RefSeq), at 2,988,765 to 2,988,992
_2368
DvMF_2369: DvMF_2369 - TPR repeat-containing protein (RefSeq), at 2,989,135 to 2,989,950
_2369
Position (kb)
2988
2989 Strain fitness (log2 ratio)
-1
0
1 at 2987.124 kb on + strand at 2987.350 kb on - strand, within DvMF_2366 at 2987.639 kb on - strand at 2987.670 kb on - strand at 2987.715 kb on + strand at 2987.762 kb on + strand at 2988.027 kb on - strand at 2988.094 kb on - strand at 2988.360 kb on - strand, within DvMF_2367 at 2988.424 kb on + strand, within DvMF_2367 at 2988.666 kb on + strand at 2988.782 kb on + strand at 2988.898 kb on + strand, within DvMF_2368 at 2989.265 kb on + strand, within DvMF_2369 at 2989.379 kb on - strand, within DvMF_2369 at 2989.446 kb on - strand, within DvMF_2369 at 2989.627 kb on - strand, within DvMF_2369
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml remove 2,987,124 + -1.4 2,987,350 - DvMF_2366 0.33 -1.1 2,987,639 - -1.2 2,987,670 - -0.6 2,987,715 + -0.2 2,987,762 + -0.1 2,988,027 - +0.7 2,988,094 - -0.7 2,988,360 - DvMF_2367 0.47 -0.3 2,988,424 + DvMF_2367 0.59 +0.4 2,988,666 + +0.7 2,988,782 + -0.5 2,988,898 + DvMF_2368 0.58 +0.1 2,989,265 + DvMF_2369 0.16 -0.2 2,989,379 - DvMF_2369 0.30 +0.4 2,989,446 - DvMF_2369 0.38 +0.7 2,989,627 - DvMF_2369 0.60 -1.5
Or see this region's nucleotide sequence