Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2322

Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2321 and DvMF_2322 are separated by 341 nucleotidesDvMF_2322 and DvMF_2323 are separated by 498 nucleotides DvMF_2321: DvMF_2321 - hypothetical protein (RefSeq), at 2,920,577 to 2,921,281 _2321 DvMF_2322: DvMF_2322 - bifunctional acetaldehyde-CoA/alcohol dehydrogenase (RefSeq), at 2,921,623 to 2,924,337 _2322 DvMF_2323: DvMF_2323 - hypothetical protein (RefSeq), at 2,924,836 to 2,925,915 _2323 Position (kb) 2921 2922 2923 2924 2925Strain fitness (log2 ratio) -2 -1 0 1at 2920.661 kb on - strand, within DvMF_2321at 2920.833 kb on - strand, within DvMF_2321at 2921.028 kb on + strand, within DvMF_2321at 2921.094 kb on - strand, within DvMF_2321at 2921.123 kb on + strand, within DvMF_2321at 2921.290 kb on - strandat 2921.343 kb on + strandat 2921.543 kb on + strandat 2921.838 kb on + strandat 2921.914 kb on - strand, within DvMF_2322at 2921.988 kb on + strand, within DvMF_2322at 2922.127 kb on + strand, within DvMF_2322at 2922.259 kb on + strand, within DvMF_2322at 2922.417 kb on - strand, within DvMF_2322at 2922.715 kb on - strand, within DvMF_2322at 2923.030 kb on + strand, within DvMF_2322at 2923.146 kb on + strand, within DvMF_2322at 2923.241 kb on + strand, within DvMF_2322at 2923.492 kb on - strand, within DvMF_2322at 2923.676 kb on + strand, within DvMF_2322at 2923.695 kb on - strand, within DvMF_2322at 2923.741 kb on - strand, within DvMF_2322at 2923.751 kb on - strand, within DvMF_2322at 2924.012 kb on + strand, within DvMF_2322at 2925.127 kb on - strand, within DvMF_2323at 2925.255 kb on + strand, within DvMF_2323

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml
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2,920,661 - DvMF_2321 0.12 +0.4
2,920,833 - DvMF_2321 0.36 -0.4
2,921,028 + DvMF_2321 0.64 -0.6
2,921,094 - DvMF_2321 0.73 +0.6
2,921,123 + DvMF_2321 0.77 -2.6
2,921,290 - -1.0
2,921,343 + -0.8
2,921,543 + -0.7
2,921,838 + +0.8
2,921,914 - DvMF_2322 0.11 -0.8
2,921,988 + DvMF_2322 0.13 -0.9
2,922,127 + DvMF_2322 0.19 -0.4
2,922,259 + DvMF_2322 0.23 -0.3
2,922,417 - DvMF_2322 0.29 -0.8
2,922,715 - DvMF_2322 0.40 -0.6
2,923,030 + DvMF_2322 0.52 -0.2
2,923,146 + DvMF_2322 0.56 -0.4
2,923,241 + DvMF_2322 0.60 -1.4
2,923,492 - DvMF_2322 0.69 -0.2
2,923,676 + DvMF_2322 0.76 +1.4
2,923,695 - DvMF_2322 0.76 -0.6
2,923,741 - DvMF_2322 0.78 -1.2
2,923,751 - DvMF_2322 0.78 -0.4
2,924,012 + DvMF_2322 0.88 -1.0
2,925,127 - DvMF_2323 0.27 -0.6
2,925,255 + DvMF_2323 0.39 -0.7

Or see this region's nucleotide sequence