Experiment: MoYLS4 with Gentamicin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2259 and DvMF_2260 overlap by 4 nucleotides DvMF_2260 and DvMF_2261 overlap by 13 nucleotides DvMF_2261 and DvMF_2262 are separated by 139 nucleotides
DvMF_2259: DvMF_2259 - ABC transporter related (RefSeq), at 2,838,525 to 2,839,349
_2259
DvMF_2260: DvMF_2260 - cobalamin synthesis protein P47K (RefSeq), at 2,839,346 to 2,840,125
_2260
DvMF_2261: DvMF_2261 - hypothetical protein (RefSeq), at 2,840,113 to 2,841,198
_2261
DvMF_2262: DvMF_2262 - hypothetical protein (RefSeq), at 2,841,338 to 2,842,216
_2262
Position (kb)
2840
2841
2842 Strain fitness (log2 ratio)
-2
-1
0
1 at 2839.179 kb on + strand, within DvMF_2259 at 2839.187 kb on - strand, within DvMF_2259 at 2839.187 kb on - strand, within DvMF_2259 at 2839.384 kb on + strand at 2839.416 kb on + strand at 2839.417 kb on + strand at 2839.474 kb on - strand, within DvMF_2260 at 2839.576 kb on - strand, within DvMF_2260 at 2839.605 kb on - strand, within DvMF_2260 at 2839.615 kb on - strand, within DvMF_2260 at 2839.619 kb on - strand, within DvMF_2260 at 2839.619 kb on - strand, within DvMF_2260 at 2839.851 kb on - strand, within DvMF_2260 at 2839.860 kb on + strand, within DvMF_2260 at 2839.901 kb on - strand, within DvMF_2260 at 2839.927 kb on + strand, within DvMF_2260 at 2840.029 kb on - strand, within DvMF_2260 at 2840.233 kb on + strand, within DvMF_2261 at 2840.509 kb on - strand, within DvMF_2261 at 2840.811 kb on + strand, within DvMF_2261 at 2840.843 kb on + strand, within DvMF_2261 at 2840.993 kb on - strand, within DvMF_2261 at 2841.168 kb on - strand at 2841.205 kb on + strand at 2841.269 kb on - strand at 2841.320 kb on - strand at 2841.446 kb on - strand, within DvMF_2262 at 2841.512 kb on + strand, within DvMF_2262 at 2841.613 kb on + strand, within DvMF_2262 at 2841.621 kb on - strand, within DvMF_2262 at 2841.699 kb on - strand, within DvMF_2262 at 2841.754 kb on + strand, within DvMF_2262 at 2841.754 kb on + strand, within DvMF_2262 at 2841.754 kb on + strand, within DvMF_2262 at 2841.754 kb on + strand, within DvMF_2262 at 2841.762 kb on - strand, within DvMF_2262 at 2841.762 kb on - strand, within DvMF_2262 at 2841.813 kb on + strand, within DvMF_2262 at 2841.939 kb on - strand, within DvMF_2262 at 2842.002 kb on - strand, within DvMF_2262
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Gentamicin 0.0625 mg/ml remove 2,839,179 + DvMF_2259 0.79 -1.9 2,839,187 - DvMF_2259 0.80 -0.7 2,839,187 - DvMF_2259 0.80 -1.1 2,839,384 + -1.9 2,839,416 + -2.0 2,839,417 + -0.4 2,839,474 - DvMF_2260 0.16 +0.9 2,839,576 - DvMF_2260 0.29 -1.0 2,839,605 - DvMF_2260 0.33 +0.4 2,839,615 - DvMF_2260 0.34 -2.2 2,839,619 - DvMF_2260 0.35 -1.4 2,839,619 - DvMF_2260 0.35 -0.6 2,839,851 - DvMF_2260 0.65 -2.7 2,839,860 + DvMF_2260 0.66 -1.4 2,839,901 - DvMF_2260 0.71 -1.0 2,839,927 + DvMF_2260 0.74 -1.4 2,840,029 - DvMF_2260 0.88 -0.7 2,840,233 + DvMF_2261 0.11 -0.4 2,840,509 - DvMF_2261 0.36 -2.1 2,840,811 + DvMF_2261 0.64 -0.7 2,840,843 + DvMF_2261 0.67 -1.4 2,840,993 - DvMF_2261 0.81 -0.3 2,841,168 - -0.4 2,841,205 + +0.5 2,841,269 - -0.2 2,841,320 - +0.5 2,841,446 - DvMF_2262 0.12 -1.0 2,841,512 + DvMF_2262 0.20 +0.1 2,841,613 + DvMF_2262 0.31 -0.4 2,841,621 - DvMF_2262 0.32 +1.0 2,841,699 - DvMF_2262 0.41 -0.0 2,841,754 + DvMF_2262 0.47 -0.3 2,841,754 + DvMF_2262 0.47 -0.6 2,841,754 + DvMF_2262 0.47 -1.8 2,841,754 + DvMF_2262 0.47 -0.4 2,841,762 - DvMF_2262 0.48 -1.3 2,841,762 - DvMF_2262 0.48 -0.4 2,841,813 + DvMF_2262 0.54 -0.5 2,841,939 - DvMF_2262 0.68 -0.5 2,842,002 - DvMF_2262 0.76 -0.4
Or see this region's nucleotide sequence